Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0332700.7

Overview

Field Value
Gene ID LotjaGi6g1v0332700
Transcript ID LotjaGi6g1v0332700.7
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Ribosomal RNA large subunit methyltransferase E; TAIR: AT5G01230.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; TrEMBL-Plants: tr|A0A0R0GT40|A0A0R0GT40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0332700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:64770940..64774023) extracted from Lotus japonicus Gifu genome v1.2.

TGCAGGGATGAAAATCTTCCTCTTATTGTAGCTATTGATTTGCAGCCAATGGCTCCAATTGAAGGTGTTATCCAGGTGCA GGGTGATATAACTAATGCTCGAACTGCTGAAGTGGTAAGTACAGCAGGTTTCCTAATTTTTTTCTCAGATGTCTTTGTTT TATTTGCAAGCTGAGATGAGTATGCTGCGCATAGCTCAGTAAAATTAGAAACTGATGTTGACCCTTTTTCTTATCTAAAC TTTGTTCGTCTCATCTGTGATTCATGTTTTTGTTGTCTCTATTCATTTTTAAAATTTTCCTTCTAAATTTTGTGTCATGT TAGAAAGATAACGTTTGTTGGCAAAATTTATATTTGGTTCCCTATTGAAACAAGTGTGAGCATTATGAGTTTCATTTAAT ATATTTGTTTCTCTCCTGTTATTTAATTTCAATTAGACATACTTGTGCATGTTAAATCCATTCACATGAATTGAGTACGT CTCTTAATTTTCTTGACATGACTCTTTACGGCTGGAGTCTATGTTTTTTTTGGAACTTGGAAGAATCATATAGGATTTGT TCTGAGGAGGCTGCTTTAACCGATCAAATGAATTTTCTTGAATGACTATTTTATTATATTTTGTGAACTTGTTTTTTTGT CTTGTTCTATTCAGGTTATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTTTGTGATGGTGCTCCTGATGGTAAA GAAAATGAGTAATTTACTTCATAATCTCTTCATACATAATATTTACGTTTACTGAAGTGCTCTTTCACTCAAAAGTTGTT TTTTTTATACCAAAAAGCTACAAATGATGTGGCAGTGTTTGTTTAAGCCTCAACCTCTTTCATACGACCTACAAGAATCA ATCTATTTCTCATTAGTTGCTCCATGTCATTTGTAATGCATTTCATCATGATATTTAGCAATTTCTTTATTTTTACTTGT AGTTTTAAAAAAGAGTTTCATCTTTTGCAGTTACTGGGCTTCATGACATGGATGAATTTGTTCAATCCCAACTCATACTT GCAGTAAGTACATGACTCCTGTCCTTTTTGGTTTCTGTTATTACATTATTTACGCTTTTATCTTTTATATTTGCCATCTT GATAGCACCTTATCCTTTACTCAAATTGGGGATGGCAAAAAATATTGAAGGCTGTAAAATCAGTTATGCCTCTTTTTAAA TCTATTCCTCTTTACCCTCTTCCCAAACTTATAATCTACTTAAAATTTTAGTACTCCTTGCTTTGCTTAGAGTTTCATCA TTTTGTTTGGCTATCTTGGTGGAAATTTGTTGCACATTGATGTTAACTCGACACTCCGTGCAGGGGTTGACCATTGTTAC ACATGTACTTAAGGAAGGAGGGAAGTTTATTGCAAAGATATTTAGAGGAAAGGATACAAGTCTTCTGTACTGCCAGGTAT TTGAAGTTTCCCCTTACCATTAAGATTTTAGAAAATGGAGTTTCACATAGTTTGAGATCGACACAAGTGTTTTTTTGCTT TTATCTCTCGCTGTCGTCCACTTTATACTTAGCTTTTGCAACATGCAAAATCTGTAGAAAAGTGAGCATAGATGTTCATC TGTGATAAAACAATGAATGGAAGTTGCAAATATTTGAAATCAATTGGAGCAATGCAAATATACCACAAAGACTACTGACT TTAGATCACATGAAACTCCAGAATTTTATTTTCTATAATATAAGCTTGACCAAAATTCTGAAGGCATACATTAAGCTGAT TGGATGCTAACAATGTAGTTGATTTTCAAAGGAAAAGAATAACATGGAGTACTTTCTTGAGAAATAAATGAAGTGCACTT ATGTAAGGTAAGGAAATTATTTGTCAACTGATCTTCACGGATAGCATGTTTTTTCTGCTTGGAACTTGGAAGGAACCTAC TCATGACTGCATCCAAAATTTTAGTTGTACTTGTGGAATAGTTGTCCAGTTCTTTCTTTTAAATACTAATAATTAGGGGA AAAAAGTGCACATATTATTTGAAAGTGCCCTTTCATTAATCAGATTTTTTAAATTAAAACTTTTTCTATAATCCCAGAAG CCAGAGAATCATAATTACATGATATGTTGTCTTTTTGTTTGCAGCTAAAATTATTTTTCCCTGTAGTGACTTTTGCAAAA CCAAAAAGCAGCCGTAATTCCAGCATAGGTAAGGATTTTAGTTTCCACAATCTTACTATTATTTTATGAGTACCTTGTCA GCTCTTTATGCGGTTGTTATTCCTTTTTTAGTATGATTTGCCATTTATGAGGAATTGGCAGTTATGCCTTTTCATTCTAT GACAGAAGCTTATCTATTATCTGACAATGTTACAACTCTTTGAAAATGAATATACCTCTTGTTGAATTGTATTTAGCTGC TGCTCCTGTGCCTCCAAACACCTTGCAACTACACTTATGACAGTTTTATCTCACTGGTTTTTCCATGGAAGTGGATTAAA ATTGTAGGAAGGTTGGTTGGTACTATTTGTACTAATGCTTTGTGCTTCACCCCTGCAGAGGCATTTGCAGTTTGTGAAAA CTATTCCCCTCCTGAAGGATTCAACCCGAAAGATCTTCATCGCCTTCTTGAGAAGGTTGGAAGTCCCTCTGGGGTAGAAG ATACAGGTATATGTGGAACATTGTAGCAAACCTTATAAGCTATCTTAGAACACAAAATAGAAAAATTATCCCTAAATTTG TATGCATACTCATCTTAACCCTTAGAAATGATTTTTTTCTTGCTTAGTTTCTTAGTGTTCATGTACATTTATTTTTCATG GAAGTTGTGTGAAGTAATTAATGCATGCGTATGGTTTTGCAGATTGCTGTAGTGGGTGGTTGGAAGGCCCTAATAAGGTG TATATCCCATTTCTAGCTTGTGGGGACCTGAGTGGGTATGATTCTGATAGATCATATCCACTACCTAAAGTTGATGGGGG AACATATCAGAGCTTGGACCCTGTACAACCCCCTATTGCCCCTCCTTACAAGAGGGCTCTCGAGTTAAAAAAAGCCTCCA ATCAAGGATTCCGAGAGCTTGAAAACCTCTCATTGGATTCTTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0332700.7) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCCAATTGAAGGTGTTATCCAGGTGCAGGGTGATATAACTAATGCTCGAACTGCTGAAGTGGTTATTAGACATTT TGATGGTTGCAAGGCTGACCTGGTTGTTTGTGATGGTGCTCCTGATGTTACTGGGCTTCATGACATGGATGAATTTGTTC AATCCCAACTCATACTTGCAGGGTTGACCATTGTTACACATGTACTTAAGGAAGGAGGGAAGTTTATTGCAAAGATATTT AGAGGAAAGGATACAAGTCTTCTGTACTGCCAGGTATTTGAACTAAAATTATTTTTCCCTGTAGTGACTTTTGCAAAACC AAAAAGCAGCCGTAATTCCAGCATAGAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAACCCGAAAG ATCTTCATCGCCTTCTTGAGAAGGTTGGAAGTCCCTCTGGGGTAGAAGATACAGATTGCTGTAGTGGGTGGTTGGAAGGC CCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGGGACCTGAGTGGGTATGATTCTGATAGATCATATCCACTACCTAA AGTTGATGGGGGAACATATCAGAGCTTGGACCCTGTACAACCCCCTATTGCCCCTCCTTACAAGAGGGCTCTCGAGTTAA AAAAAGCCTCCAATCAAGGATTCCGAGAGCTTGAAAACCTCTCATTGGATTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0332700.7) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIF RGKDTSLLYCQVFELKLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVEDTDCCSGWLEG PNKVYIPFLACGDLSGYDSDRSYPLPKVDGGTYQSLDPVQPPIAPPYKRALELKKASNQGFRELENLSLDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.150
1 130 130 4.1E-35 –
PANTHER
PTHR10920
1 223 223 2.6E-89 –
Pfam
PF01728
1 124 124 8.4E-34
IPR002877
PANTHER
PTHR10920:SF12
1 223 223 2.6E-89
IPR028590
SUPERFAMILY
SSF53335
7 124 118 8.56E-16
IPR029063

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0008175
Molecular function TRNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in a tRNA molecule.
Subterm of
GO:0032259
Biological process Methylation The process in which a methyl group is covalently attached to a molecule.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0332700.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…