Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi6g1v0332700
Transcript ID	LotjaGi6g1v0332700.6
Related isoforms 7	LotjaGi6g1v0332700.1 LotjaGi6g1v0332700.2 LotjaGi6g1v0332700.3 LotjaGi6g1v0332700.4 LotjaGi6g1v0332700.5 LotjaGi6g1v0332700.7 LotjaGi6g1v0332700.8
Lotus japonicus genome version	Gifu v1.2
Description	Ribosomal RNA large subunit methyltransferase E; TAIR: AT5G01230.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|Q9UET6\|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; TrEMBL-Plants: tr\|I1MEI2\|I1MEI2_SOYBN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Found in the gene: LotjaGi6g1v0332700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:64769463..64774023) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGCAAAGCTTCAAGGGATAAGAGGGTGGGTGTGGTTGATTTATGCTTTATTGTGTTGTTCTTTCTTATTCTTTCTTC TTGTTTTGTGAGGTTGTCTTCATGGTTTGCTAAATTGGTTGGTTTTCAGGATATTTACTATAGGAAAGCGAAAGAAGAAG GTTGGCGTGCTCGAAGTGCATTTAAACTCCTTCAGATTGATGAGGAATTCAACATTTTTGAAGGTAACACGCGTTGCCCG GGTTTAATTGTTTGAGTTTGTTGATTTTTTCGTAACTAGAGAATGAGTATTATCAAATATGCTAATGAAAGGTTCTTATC AAGCATTTTGTTCTACAGTTTTGAGGCTACACAGAACTTGCAGATATGTGTGCATATATGATATATAGAATGTGCACATA TTCAAATTTTTGGTTTCAGGTTTGAGACTCACTTTTCCCCTTGTTTTTCCATTTGCAGGTGTGAGACGTGTTGTAGATTT ATGTGCTGCCCCAGGTAGCTGGAGTCAGGTACTTGTGATGAAATTATCACTAATCTGGCATATGAATTGTTTACAATGAA ACAGGCTTTTCACAATGTAGTTTATACTTACATTTTACTCAACCATTCTCCCATGTATCTAATAAGTAATATCTAATTCT TACATACAGGTTTTGAGTCGTAAGCTGTATCTCCCAGCCAAGCTTGCACCTGATGCAAAGTAAGTTGACTTTCTTTGAAA GTTATGTGCTTTGTTAAGGATTTCCTTGTTATTGAGGTCTCTTATACGGTAAATGCATGCTGGGACTCAGGATTGAAATT AAGCTCTATCATACCACGTTTCCTTTCTTGCTTGTCATAGACTTACCTACAATACAATTGGTATCTTTTTTTTCTTAATT ATCATGATAAACGAAGCATTTCATCAAGACAAAGGGAAAAAAACTGCAGAGTTTGAAGGATAAGGGATCCTCCTTAACTT ATAAATGAAATACAAAAAGAAAACAATAAAGAAAAAATCAATGAAGCAAAGATGTCCTGATATGCGTGTCATGCTAGGCG CCATCTCAATTAATTCATCATCCCTTCTTACATTGTTTGGCTGCTGATTCTTTGATGAATTTGGAGTTTTTTGTGAATGA TATTTGTACTCCTGGTCTTTGGACCAATTTTTTTATGATAGCTTTGGCAGTTTTAGCAGGCAGTGTGTGATTTATGCTAC ATTGTGGTGCACTTGGTCTATAACTTTCATCCTTAGCTGATTTGGGACAAGATTAGGCATTGACATAAATTACATGACAT GTTATTCATTTCTTCTTTTTCCTTTGTTGTTTGTATTGTCTTTTTTACATTATGGAGCATCCTTCATCCTTTGTTGTTTG TGTTGTCTTTTTCCTTTGTTATTTCCTGTTCTTAATTTCTTTTTATATGTAAAAATATGTATATTAATGATCTCTCAGTC CTCATCAGTATCATCAATTTCTTGCTGCATCATGATATGCAGGGATGAAAATCTTCCTCTTATTGTAGCTATTGATTTGC AGCCAATGGCTCCAATTGAAGGTGTTATCCAGGTGCAGGGTGATATAACTAATGCTCGAACTGCTGAAGTGGTAAGTACA GCAGGTTTCCTAATTTTTTTCTCAGATGTCTTTGTTTTATTTGCAAGCTGAGATGAGTATGCTGCGCATAGCTCAGTAAA ATTAGAAACTGATGTTGACCCTTTTTCTTATCTAAACTTTGTTCGTCTCATCTGTGATTCATGTTTTTGTTGTCTCTATT CATTTTTAAAATTTTCCTTCTAAATTTTGTGTCATGTTAGAAAGATAACGTTTGTTGGCAAAATTTATATTTGGTTCCCT ATTGAAACAAGTGTGAGCATTATGAGTTTCATTTAATATATTTGTTTCTCTCCTGTTATTTAATTTCAATTAGACATACT TGTGCATGTTAAATCCATTCACATGAATTGAGTACGTCTCTTAATTTTCTTGACATGACTCTTTACGGCTGGAGTCTATG TTTTTTTTGGAACTTGGAAGAATCATATAGGATTTGTTCTGAGGAGGCTGCTTTAACCGATCAAATGAATTTTCTTGAAT GACTATTTTATTATATTTTGTGAACTTGTTTTTTTGTCTTGTTCTATTCAGGTTATTAGACATTTTGATGGTTGCAAGGC TGACCTGGTTGTTTGTGATGGTGCTCCTGATGGTAAAGAAAATGAGTAATTTACTTCATAATCTCTTCATACATAATATT TACGTTTACTGAAGTGCTCTTTCACTCAAAAGTTGTTTTTTTTATACCAAAAAGCTACAAATGATGTGGCAGTGTTTGTT TAAGCCTCAACCTCTTTCATACGACCTACAAGAATCAATCTATTTCTCATTAGTTGCTCCATGTCATTTGTAATGCATTT CATCATGATATTTAGCAATTTCTTTATTTTTACTTGTAGTTTTAAAAAAGAGTTTCATCTTTTGCAGTTACTGGGCTTCA TGACATGGATGAATTTGTTCAATCCCAACTCATACTTGCAGTAAGTACATGACTCCTGTCCTTTTTGGTTTCTGTTATTA CATTATTTACGCTTTTATCTTTTATATTTGCCATCTTGATAGCACCTTATCCTTTACTCAAATTGGGGATGGCAAAAAAT ATTGAAGGCTGTAAAATCAGTTATGCCTCTTTTTAAATCTATTCCTCTTTACCCTCTTCCCAAACTTATAATCTACTTAA AATTTTAGTACTCCTTGCTTTGCTTAGAGTTTCATCATTTTGTTTGGCTATCTTGGTGGAAATTTGTTGCACATTGATGT TAACTCGACACTCCGTGCAGGGGTTGACCATTGTTACACATGTACTTAAGGAAGGAGGGAAGTTTATTGCAAAGATATTT AGAGGAAAGGATACAAGTCTTCTGTACTGCCAGGTATTTGAAGTTTCCCCTTACCATTAAGATTTTAGAAAATGGAGTTT CACATAGTTTGAGATCGACACAAGTGTTTTTTTGCTTTTATCTCTCGCTGTCGTCCACTTTATACTTAGCTTTTGCAACA TGCAAAATCTGTAGAAAAGTGAGCATAGATGTTCATCTGTGATAAAACAATGAATGGAAGTTGCAAATATTTGAAATCAA TTGGAGCAATGCAAATATACCACAAAGACTACTGACTTTAGATCACATGAAACTCCAGAATTTTATTTTCTATAATATAA GCTTGACCAAAATTCTGAAGGCATACATTAAGCTGATTGGATGCTAACAATGTAGTTGATTTTCAAAGGAAAAGAATAAC ATGGAGTACTTTCTTGAGAAATAAATGAAGTGCACTTATGTAAGGTAAGGAAATTATTTGTCAACTGATCTTCACGGATA GCATGTTTTTTCTGCTTGGAACTTGGAAGGAACCTACTCATGACTGCATCCAAAATTTTAGTTGTACTTGTGGAATAGTT GTCCAGTTCTTTCTTTTAAATACTAATAATTAGGGGAAAAAAGTGCACATATTATTTGAAAGTGCCCTTTCATTAATCAG ATTTTTTAAATTAAAACTTTTTCTATAATCCCAGAAGCCAGAGAATCATAATTACATGATATGTTGTCTTTTTGTTTGCA GCTAAAATTATTTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGGTAAGGATTTTAGTT TCCACAATCTTACTATTATTTTATGAGTACCTTGTCAGCTCTTTATGCGGTTGTTATTCCTTTTTTAGTATGATTTGCCA TTTATGAGGAATTGGCAGTTATGCCTTTTCATTCTATGACAGAAGCTTATCTATTATCTGACAATGTTACAACTCTTTGA AAATGAATATACCTCTTGTTGAATTGTATTTAGCTGCTGCTCCTGTGCCTCCAAACACCTTGCAACTACACTTATGACAG TTTTATCTCACTGGTTTTTCCATGGAAGTGGATTAAAATTGTAGGAAGGTTGGTTGGTACTATTTGTACTAATGCTTTGT GCTTCACCCCTGCAGAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAACCCGAAAGATCTTCATCGC CTTCTTGAGAAGGTTGGAAGTCCCTCTGGGGTAGAAGATACAGGTATATGTGGAACATTGTAGCAAACCTTATAAGCTAT CTTAGAACACAAAATAGAAAAATTATCCCTAAATTTGTATGCATACTCATCTTAACCCTTAGAAATGATTTTTTTCTTGC TTAGTTTCTTAGTGTTCATGTACATTTATTTTTCATGGAAGTTGTGTGAAGTAATTAATGCATGCGTATGGTTTTGCAGA TTGCTGTAGTGGGTGGTTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGGGACCTGAGTGGGTATGATT CTGATAGATCATATCCACTACCTAAAGTTGATGGGGGAACATATCAGAGCTTGGACCCTGTACAACCCCCTATTGCCCCT CCTTACAAGAGGGCTCTCGAGTTAAAAAAAGCCTCCAATCAAGGATTCCGAGAGCTTGAAAACCTCTCATTGGATTCTTG A

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0332700.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCAAAGCTTCAAGGGATAAGAGGGATATTTACTATAGGAAAGCGAAAGAAGAAGGTTGGCGTGCTCGAAGTGCATT TAAACTCCTTCAGATTGATGAGGAATTCAACATTTTTGAAGGTGTGAGACGTGTTGTAGATTTATGTGCTGCCCCAGGTA GCTGGAGTCAGGTTTTGAGTCGTAAGCTGTATCTCCCAGCCAAGCTTGCACCTGATGCAAAGGATGAAAATCTTCCTCTT ATTGTAGCTATTGATTTGCAGCCAATGGCTCCAATTGAAGGTGTTATCCAGGTGCAGGGTGATATAACTAATGCTCGAAC TGCTGAAGTGGTTATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTTTGTGATGGTGCTCCTGATGTTACTGGGC TTCATGACATGGATGAATTTGTTCAATCCCAACTCATACTTGCAGGGTTGACCATTGTTACACATGTACTTAAGGAAGGA GGGAAGTTTATTGCAAAGATATTTAGAGGAAAGGATACAAGTCTTCTGTACTGCCAGCTAAAATTATTTTTCCCTGTAGT GACTTTTGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAG GATTCAACCCGAAAGATCTTCATCGCCTTCTTGAGAAGGTTGGAAGTCCCTCTGGGGTAGAAGATACAGATTGCTGTAGT GGGTGGTTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGGGACCTGAGTGGGTATGATTCTGATAGATC ATATCCACTACCTAAAGTTGATGGGGGAACATATCAGAGCTTGGACCCTGTACAACCCCCTATTGCCCCTCCTTACAAGA GGGCTCTCGAGTTAAAAAAAGCCTCCAATCAAGGATTCCGAGAGCTTGAAAACCTCTCATTGGATTCTTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0332700.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVRRVVDLCAAPGSWSQVLSRKLYLPAKLAPDAKDENLPL IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEG GKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVEDTDCCS GWLEGPNKVYIPFLACGDLSGYDSDRSYPLPKVDGGTYQSLDPVQPPIAPPYKRALELKKASNQGFRELENLSLDS

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10920 View details on PTHR10920 Search for proteins/transripts with this domain View external data on PTHR10920	1	308	308	2.7E-137	–
PANTHER	PTHR10920:SF12 View details on PTHR10920:SF12 Search for proteins/transripts with this domain View external data on PTHR10920:SF12	1	308	308	2.7E-137	IPR028590 Show description in modal box View details on IPR028590 Search for proteins/transripts with this domain View on EBI InterPro Service
Hamap	MF_03162 View details on MF_03162 Search for proteins/transripts with this domain View external data on MF_03162	1	268	268	34.025	IPR028590 Show description in modal box View details on IPR028590 Search for proteins/transripts with this domain View on EBI InterPro Service
Hamap	MF_01547 View details on MF_01547 Search for proteins/transripts with this domain View external data on MF_01547	5	210	206	32.043	IPR015507 Show description in modal box View details on IPR015507 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	20	215	196	3.7E-65	–
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	20	209	190	1.65E-33	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01728 View details on PF01728 Search for proteins/transripts with this domain View external data on PF01728	21	209	189	1.8E-64	IPR002877 Show description in modal box View details on IPR002877 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0001510 View details of GO:0001510 AmiGO InterPro QuickGO	Biological process	RNA methylation	Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor.	Subterm of View details of GO:0009451 View details of GO:0043414
GO:0008033 View details of GO:0008033 AmiGO InterPro QuickGO	Biological process	TRNA processing	The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.	Subterm of View details of GO:0006399 View details of GO:0034470
GO:0008168 View details of GO:0008168 AmiGO InterPro QuickGO	Molecular function	Methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.	Subterm of View details of GO:0016741
GO:0008175 View details of GO:0008175 AmiGO InterPro QuickGO	Molecular function	TRNA methyltransferase activity	Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in a tRNA molecule.	Subterm of View details of GO:0008173 View details of GO:0140101
GO:0032259 View details of GO:0032259 AmiGO InterPro QuickGO	Biological process	Methylation	The process in which a methyl group is covalently attached to a molecule.	Subterm of View details of GO:0008152

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0332700.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi6g1v0332700.6