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LotjaGi6g1v0332700.8

Overview

Field Value
Gene ID LotjaGi6g1v0332700
Transcript ID LotjaGi6g1v0332700.8
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Ribosomal RNA large subunit methyltransferase E; TAIR: AT5G01230.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; TrEMBL-Plants: tr|I1MEI2|I1MEI2_SOYBN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Found in the gene: LotjaGi6g1v0332700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:64770988..64774023) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTCCAATTGAAGGTGTTATCCAGGTGCAGGGTGATATAACTAATGCTCGAACTGCTGAAGTGGTAAGTACAGCAGG TTTCCTAATTTTTTTCTCAGATGTCTTTGTTTTATTTGCAAGCTGAGATGAGTATGCTGCGCATAGCTCAGTAAAATTAG AAACTGATGTTGACCCTTTTTCTTATCTAAACTTTGTTCGTCTCATCTGTGATTCATGTTTTTGTTGTCTCTATTCATTT TTAAAATTTTCCTTCTAAATTTTGTGTCATGTTAGAAAGATAACGTTTGTTGGCAAAATTTATATTTGGTTCCCTATTGA AACAAGTGTGAGCATTATGAGTTTCATTTAATATATTTGTTTCTCTCCTGTTATTTAATTTCAATTAGACATACTTGTGC ATGTTAAATCCATTCACATGAATTGAGTACGTCTCTTAATTTTCTTGACATGACTCTTTACGGCTGGAGTCTATGTTTTT TTTGGAACTTGGAAGAATCATATAGGATTTGTTCTGAGGAGGCTGCTTTAACCGATCAAATGAATTTTCTTGAATGACTA TTTTATTATATTTTGTGAACTTGTTTTTTTGTCTTGTTCTATTCAGGTTATTAGACATTTTGATGGTTGCAAGGCTGACC TGGTTGTTTGTGATGGTGCTCCTGATGGTAAAGAAAATGAGTAATTTACTTCATAATCTCTTCATACATAATATTTACGT TTACTGAAGTGCTCTTTCACTCAAAAGTTGTTTTTTTTATACCAAAAAGCTACAAATGATGTGGCAGTGTTTGTTTAAGC CTCAACCTCTTTCATACGACCTACAAGAATCAATCTATTTCTCATTAGTTGCTCCATGTCATTTGTAATGCATTTCATCA TGATATTTAGCAATTTCTTTATTTTTACTTGTAGTTTTAAAAAAGAGTTTCATCTTTTGCAGTTACTGGGCTTCATGACA TGGATGAATTTGTTCAATCCCAACTCATACTTGCAGTAAGTACATGACTCCTGTCCTTTTTGGTTTCTGTTATTACATTA TTTACGCTTTTATCTTTTATATTTGCCATCTTGATAGCACCTTATCCTTTACTCAAATTGGGGATGGCAAAAAATATTGA AGGCTGTAAAATCAGTTATGCCTCTTTTTAAATCTATTCCTCTTTACCCTCTTCCCAAACTTATAATCTACTTAAAATTT TAGTACTCCTTGCTTTGCTTAGAGTTTCATCATTTTGTTTGGCTATCTTGGTGGAAATTTGTTGCACATTGATGTTAACT CGACACTCCGTGCAGGGGTTGACCATTGTTACACATGTACTTAAGGAAGGAGGGAAGTTTATTGCAAAGATATTTAGAGG AAAGGATACAAGTCTTCTGTACTGCCAGGTATTTGAAGTTTCCCCTTACCATTAAGATTTTAGAAAATGGAGTTTCACAT AGTTTGAGATCGACACAAGTGTTTTTTTGCTTTTATCTCTCGCTGTCGTCCACTTTATACTTAGCTTTTGCAACATGCAA AATCTGTAGAAAAGTGAGCATAGATGTTCATCTGTGATAAAACAATGAATGGAAGTTGCAAATATTTGAAATCAATTGGA GCAATGCAAATATACCACAAAGACTACTGACTTTAGATCACATGAAACTCCAGAATTTTATTTTCTATAATATAAGCTTG ACCAAAATTCTGAAGGCATACATTAAGCTGATTGGATGCTAACAATGTAGTTGATTTTCAAAGGAAAAGAATAACATGGA GTACTTTCTTGAGAAATAAATGAAGTGCACTTATGTAAGGTAAGGAAATTATTTGTCAACTGATCTTCACGGATAGCATG TTTTTTCTGCTTGGAACTTGGAAGGAACCTACTCATGACTGCATCCAAAATTTTAGTTGTACTTGTGGAATAGTTGTCCA GTTCTTTCTTTTAAATACTAATAATTAGGGGAAAAAAGTGCACATATTATTTGAAAGTGCCCTTTCATTAATCAGATTTT TTAAATTAAAACTTTTTCTATAATCCCAGAAGCCAGAGAATCATAATTACATGATATGTTGTCTTTTTGTTTGCAGCTAA AATTATTTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGGTAAGGATTTTAGTTTCCAC AATCTTACTATTATTTTATGAGTACCTTGTCAGCTCTTTATGCGGTTGTTATTCCTTTTTTAGTATGATTTGCCATTTAT GAGGAATTGGCAGTTATGCCTTTTCATTCTATGACAGAAGCTTATCTATTATCTGACAATGTTACAACTCTTTGAAAATG AATATACCTCTTGTTGAATTGTATTTAGCTGCTGCTCCTGTGCCTCCAAACACCTTGCAACTACACTTATGACAGTTTTA TCTCACTGGTTTTTCCATGGAAGTGGATTAAAATTGTAGGAAGGTTGGTTGGTACTATTTGTACTAATGCTTTGTGCTTC ACCCCTGCAGAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAACCCGAAAGATCTTCATCGCCTTCT TGAGAAGGTTGGAAGTCCCTCTGGGGTAGAAGATACAGGTATATGTGGAACATTGTAGCAAACCTTATAAGCTATCTTAG AACACAAAATAGAAAAATTATCCCTAAATTTGTATGCATACTCATCTTAACCCTTAGAAATGATTTTTTTCTTGCTTAGT TTCTTAGTGTTCATGTACATTTATTTTTCATGGAAGTTGTGTGAAGTAATTAATGCATGCGTATGGTTTTGCAGATTGCT GTAGTGGGTGGTTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGGGACCTGAGTGGGTATGATTCTGAT AGATCATATCCACTACCTAAAGTTGATGGGGGAACATATCAGAGCTTGGACCCTGTACAACCCCCTATTGCCCCTCCTTA CAAGAGGGCTCTCGAGTTAAAAAAAGCCTCCAATCAAGGATTCCGAGAGCTTGAAAACCTCTCATTGGATTCTTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0332700.8) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCCAATTGAAGGTGTTATCCAGGTGCAGGGTGATATAACTAATGCTCGAACTGCTGAAGTGGTTATTAGACATTT TGATGGTTGCAAGGCTGACCTGGTTGTTTGTGATGGTGCTCCTGATGTTACTGGGCTTCATGACATGGATGAATTTGTTC AATCCCAACTCATACTTGCAGGGTTGACCATTGTTACACATGTACTTAAGGAAGGAGGGAAGTTTATTGCAAAGATATTT AGAGGAAAGGATACAAGTCTTCTGTACTGCCAGCTAAAATTATTTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAG CCGTAATTCCAGCATAGAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAACCCGAAAGATCTTCATC GCCTTCTTGAGAAGGTTGGAAGTCCCTCTGGGGTAGAAGATACAGATTGCTGTAGTGGGTGGTTGGAAGGCCCTAATAAG GTGTATATCCCATTTCTAGCTTGTGGGGACCTGAGTGGGTATGATTCTGATAGATCATATCCACTACCTAAAGTTGATGG GGGAACATATCAGAGCTTGGACCCTGTACAACCCCCTATTGCCCCTCCTTACAAGAGGGCTCTCGAGTTAAAAAAAGCCT CCAATCAAGGATTCCGAGAGCTTGAAAACCTCTCATTGGATTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0332700.8) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIF RGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVEDTDCCSGWLEGPNK VYIPFLACGDLSGYDSDRSYPLPKVDGGTYQSLDPVQPPIAPPYKRALELKKASNQGFRELENLSLDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.150
1 127 127 6.2E-37 –
PANTHER
PTHR10920
1 220 220 8.2E-91 –
Pfam
PF01728
1 121 121 4.9E-36
IPR002877
PANTHER
PTHR10920:SF12
1 220 220 8.2E-91
IPR028590
SUPERFAMILY
SSF53335
7 121 115 9.04E-18
IPR029063

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0008175
Molecular function TRNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in a tRNA molecule.
Subterm of
GO:0032259
Biological process Methylation The process in which a methyl group is covalently attached to a molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0332700.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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