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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009072
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 323 results. Now displaying 2 of 7 with 50 rows per page. This search has taken 5.799s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v2613490.2
n.a. Transcription initiation factor TFIID subunit [Medicago truncatula] gi|357513949|ref|XP_003627263.1| chr3 32188022 32197073 -
3 domain predictions
1 GO term
Lj3g3v2994480.1
n.a. PREDICTED: DNA polymerase epsilon subunit 3-like [Cicer arietinum] gi|502145798|ref|XP_004506183.1| chr3 37095866 37097725 -
3 domain predictions
1 GO term
Lj3g3v3028970.1
n.a. PREDICTED: histone H2B.2-like [Cicer arietinum] gi|502084676|ref|XP_004487735.1| chr3 37864893 37866208 +
3 domain predictions
1 GO term
Lj3g3v3086110.1
n.a. DNA polymerase epsilon subunit [Medicago truncatula] gi|357472241|ref|XP_003606405.1| chr3 38812716 38816529 +
3 domain predictions
1 GO term
Lj3g3v3086110.2
n.a. DNA polymerase epsilon subunit [Medicago truncatula] gi|357472241|ref|XP_003606405.1| chr3 38812716 38815196 +
3 domain predictions
1 GO term
Lj3g3v3086110.3
n.a. DNA polymerase epsilon subunit [Medicago truncatula] gi|357472241|ref|XP_003606405.1| chr3 38812716 38816529 +
3 domain predictions
1 GO term
Lj3g3v3120830.1
n.a. Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1| chr3 39017586 39018478 +
3 domain predictions
1 GO term
Lj3g3v3260400.1
n.a. PREDICTED: histone H3.3C-like [Mustela putorius furo] gi|511915213|ref|XP_004776917.1| chr3 40138745 40139284 +
3 domain predictions
1 GO term
Lj3g3v3260410.1
n.a. Protein HIS-42 [Caenorhabditis elegans] gi|17532993|ref|NP_496899.1| chr3 40146107 40146597 +
3 domain predictions
1 GO term
Lj4g3v0109410.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-3-like [Cicer arietinum] gi|502079716|ref|XP_004486346.1| chr4 931856 932530 -
3 domain predictions
1 GO term
Lj4g3v0486190.1
n.a. histone H3, expressed [Triticum aestivum] gi|300681467|emb|CBH32561.1| chr4 8215755 8216575 -
3 domain predictions
1 GO term
Lj4g3v0755930.1
n.a. histone H3, partial [Mentha sp]. MC-2012] gi|380293138|gb|AFD50219.1| chr4 11802622 11803014 -
3 domain predictions
1 GO term
Lj4g3v1411020.1
n.a. PREDICTED: centromere protein X-like [Cicer arietinum] gi|502176342|ref|XP_004515852.1| chr4 22095733 22098374 +
2 domain predictions
1 GO term
Lj4g3v1774670.1
n.a. PREDICTED: protein Dr1 homolog isoform X1 [Cicer arietinum] gi|502151745|ref|XP_004508592.1| chr4 25178224 25182346 +
3 domain predictions
1 GO term
Lj4g3v1774670.2
n.a. PREDICTED: protein Dr1 homolog isoform 1 [Glycine max] gi|356511589|ref|XP_003524506.1| chr4 25178224 25182346 +
3 domain predictions
1 GO term
Lj4g3v1812480.1
n.a. histone 2 [Populus trichocarpa] gi|224143081|ref|XP_002324843.1| chr4 25535163 25536742 -
3 domain predictions
1 GO term
Lj4g3v2096060.1
n.a. n.a. chr4 28838444 28842352 +
3 domain predictions
1 GO term
Lj4g3v2096070.1
n.a. TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1| chr4 28841802 28842352 -
3 domain predictions
1 GO term
Lj4g3v2253530.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 9-like isoform X2 [Cicer arietinum] gi|502150764|ref|XP_004508112.1| chr4 31251214 31253677 -
3 domain predictions
1 GO term
Lj4g3v2365210.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max] gi|356532577|ref|XP_003534848.1| chr4 32510084 32511093 +
3 domain predictions
1 GO term
Lj4g3v2799410.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max] gi|356511129|ref|XP_003524282.1| chr4 37445225 37446323 -
3 domain predictions
1 GO term
Lj4g3v2825520.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max] gi|356511186|ref|XP_003524310.1| chr4 37802801 37803454 +
3 domain predictions
1 GO term
Lj5g3v0308460.1
n.a. PREDICTED: serine-rich adhesin for platelets-like [Cicer arietinum] gi|502162858|ref|XP_004512638.1| chr5 2877258 2890195 -
2 domain predictions
1 GO term
Lj5g3v0539920.1
n.a. histone 2 [Populus trichocarpa] gi|224092416|ref|XP_002309600.1| chr5 6402199 6405597 +
3 domain predictions
1 GO term
Lj5g3v0616270.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-8-like isoform 1 [Glycine max] gi|356572407|ref|XP_003554360.1| chr5 8190063 8194184 +
3 domain predictions
1 GO term
Lj5g3v1014930.1
n.a. Histone H2A [Medicago truncatula] gi|357440545|ref|XP_003590550.1| chr5 16463391 16464618 -
3 domain predictions
1 GO term
Lj5g3v1473470.1
n.a. nuclear transcription factor Y subunit C2 [Medicago truncatula] gi|388523237|gb|AFK49671.1| chr5 21594950 21598907 +
3 domain predictions
1 GO term
Lj5g3v1601790.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 13-like [Glycine max] gi|356534862|ref|XP_003535970.1| chr5 23232564 23234640 +
3 domain predictions
1 GO term
Lj5g3v1654150.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max] gi|356500286|ref|XP_003518964.1| chr5 23721428 23723882 -
3 domain predictions
1 GO term
Lj6g3v0753150.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-3-like [Glycine max] gi|356569629|ref|XP_003553001.1| chr6 7066744 7066956 -
3 domain predictions
1 GO term
Lj6g3v0818980.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 6-like isoform 1 [Glycine max] gi|356527101|ref|XP_003532152.1| chr6 8258281 8264538 -
3 domain predictions
1 GO term
Lj6g3v1126420.1
n.a. histone H3 [Zea mays] gi|195606516|gb|ACG25088.1| chr6 13918370 13919082 +
3 domain predictions
1 GO term
Lj6g3v1584620.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-8-like [Glycine max] gi|356537473|ref|XP_003537251.1| chr6 17906294 17907275 -
3 domain predictions
1 GO term
Lj6g3v1720580.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-3-like [Glycine max] gi|356555763|ref|XP_003546199.1| chr6 19473192 19475372 -
3 domain predictions
1 GO term
Lj6g3v1720580.2
n.a. PREDICTED: nuclear transcription factor Y subunit B-3-like [Glycine max] gi|356555763|ref|XP_003546199.1| chr6 19473192 19475372 -
3 domain predictions
1 GO term
Lj6g3v1880140.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-9-like [Glycine max] gi|356528546|ref|XP_003532862.1| chr6 20693694 20695117 -
3 domain predictions
1 GO term
Lj6g3v1880170.1
n.a. Nuclear transcription factor Y subunit C-9 isoform 1 [Theobroma cacao] gi|508713665|gb|EOY05562.1| chr6 20701813 20702543 -
3 domain predictions
1 GO term
LotjaGi1g1v0016000.1
n.a. Nuclear transcription factor Y protein; TAIR: AT4G14540.1 nuclear factor Y, subunit B3; Swiss-Prot: sp|Q75IZ7|NFYB8_ORYSJ Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0L9VBC0|A0A0L9VBC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0016000 LjG1.1_chr1 2046304 2050334 -
3 domain predictions
1 GO term
LotjaGi1g1v0053200.1
n.a. Nuclear transcription factor Y subunit C5; TAIR: AT3G12480.1 nuclear factor Y, subunit C11; Swiss-Prot: sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor; TrEMBL-Plants: tr|K7KB58|K7KB58_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053200 LjG1.1_chr1 7514286 7519248 -
3 domain predictions
1 GO term
LotjaGi1g1v0053200.2
n.a. Nuclear transcription factor Y protein; TAIR: AT5G19490.1 Histone superfamily protein; Swiss-Prot: sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor; TrEMBL-Plants: tr|I1JIU1|I1JIU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053200 LjG1.1_chr1 7514447 7517554 -
3 domain predictions
1 GO term
LotjaGi1g1v0091100.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|D7M7R3|D7M7R3_ARALL Histone H3; Found in the gene: LotjaGi1g1v0091100 LjG1.1_chr1 13238007 13238735 +
3 domain predictions
1 GO term
LotjaGi1g1v0091300.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|D7M7R3|D7M7R3_ARALL Histone H3; Found in the gene: LotjaGi1g1v0091300 LjG1.1_chr1 13244427 13245201 +
3 domain predictions
1 GO term
LotjaGi1g1v0124700.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0124700 LjG1.1_chr1 19735491 19735925 +
3 domain predictions
1 GO term
LotjaGi1g1v0124700.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0124700 LjG1.1_chr1 19735614 19735925 +
3 domain predictions
1 GO term
LotjaGi1g1v0204100.1
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|A0A067J8V0|A0A067J8V0_JATCU Uncharacterized protein; Found in the gene: LotjaGi1g1v0204100 LjG1.1_chr1 43941679 43942700 -
3 domain predictions
1 GO term
LotjaGi1g1v0204100.2
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi1g1v0204100 LjG1.1_chr1 43941991 43942541 -
3 domain predictions
1 GO term
LotjaGi1g1v0206300.1
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3SKR2|I3SKR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0206300 LjG1.1_chr1 44887445 44893732 -
3 domain predictions
1 GO term
LotjaGi1g1v0206300.2
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.4 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3SKR2|I3SKR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0206300 LjG1.1_chr1 44889343 44893654 -
3 domain predictions
1 GO term
LotjaGi1g1v0206300.3
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|C6T5K3|C6T5K3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0206300 LjG1.1_chr1 44889993 44893366 -
3 domain predictions
1 GO term
LotjaGi1g1v0206300.4
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3SKR2|I3SKR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0206300 LjG1.1_chr1 44889993 44893366 -
3 domain predictions
1 GO term