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Lj6g3v1126420.1

Overview

Field Value
Gene ID Lj6g3v1126420
Transcript ID Lj6g3v1126420.1
Lotus japonicus genome version MG20 v3.0
Description histone H3 [Zea mays] gi|195606516|gb|ACG25088.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 42 42 – –
Pfam
PF00125
1 132 132 3.00E-53
IPR007125
PANTHER
PTHR11426
1 134 134 7.30E-127
IPR000164
Gene3D
G3DSA:1.10.20.10
2 134 133 3.00E-80
IPR009072
SUPERFAMILY
SSF47113
2 134 133 2.90E-55
IPR009072
PRINTS
PR00622
3 17 15 6.70E-82
IPR000164
ProSitePatterns
PS00322
15 21 7 –
IPR000164
PRINTS
PR00622
17 31 15 6.70E-82
IPR000164
PRINTS
PR00622
34 55 22 6.70E-82
IPR000164
SMART
SM00428
34 136 103 4.70E-71
IPR000164
PRINTS
PR00622
58 75 18 6.70E-82
IPR000164
ProSitePatterns
PS00959
67 75 9 –
IPR000164
PRINTS
PR00622
80 98 19 6.70E-82
IPR000164
PRINTS
PR00622
98 114 17 6.70E-82
IPR000164
PRINTS
PR00622
114 135 22 6.70E-82
IPR000164

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v1126420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1126420.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.