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Lj5g3v0539920.1

Overview

Field Value
Gene ID Lj5g3v0539920
Transcript ID Lj5g3v0539920.1
Lotus japonicus genome version MG20 v3.0
Description histone 2 [Populus trichocarpa] gi|224092416|ref|XP_002309600.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 38 38 – –
PANTHER
PTHR23430
1 133 133 1.80E-98 –
Pfam
PF00125
14 106 93 9.40E-19
IPR007125
SUPERFAMILY
SSF47113
15 114 100 4.54E-41
IPR009072
SMART
SM00414
17 137 121 4.00E-70
IPR002119
Gene3D
G3DSA:1.10.20.10
20 136 117 2.70E-52
IPR009072
PRINTS
PR00620
28 50 23 2.70E-43
IPR002119
CDD
cd00074
29 133 105 3.76E-55 –
ProSitePatterns
PS00046
36 42 7 –
IPR032458
PRINTS
PR00620
58 73 16 2.70E-43
IPR002119
PRINTS
PR00620
73 86 14 2.70E-43
IPR002119
PRINTS
PR00620
87 101 15 2.70E-43
IPR002119
Pfam
PF16211
107 136 30 9.40E-11
IPR032454
PRINTS
PR00620
114 132 19 2.70E-43
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

LORE1 insertions 26

Expression data

Expression pattern

Expression pattern of Lj5g3v0539920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0539920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.