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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013320
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 826 results. Now displaying 9 of 17 with 50 rows per page. This search has taken 5.486s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0392840.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357515961|ref|XP_003628269.1| chr3 3178342 3181288 +
2 domain predictions
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Lj3g3v0397040.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140-like isoform X3 [Cicer arietinum] gi|502177302|ref|XP_004516051.1| chr3 3262874 3277527 -
2 domain predictions
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Lj3g3v0397040.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140-like isoform X2 [Cicer arietinum] gi|502177298|ref|XP_004516050.1| chr3 3262874 3294883 -
2 domain predictions
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Lj3g3v0397040.3
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140-like isoform X1 [Cicer arietinum] gi|502177294|ref|XP_004516049.1| chr3 3262874 3294883 -
2 domain predictions
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Lj3g3v0420630.1
n.a. PREDICTED: U-box domain-containing protein 35-like isoform X3 [Cicer arietinum] gi|502132632|ref|XP_004501456.1| chr3 3636574 3641400 +
2 domain predictions
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Lj3g3v0422690.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Glycine max] gi|356526419|ref|XP_003531815.1| chr3 3664388 3679597 -
2 domain predictions
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Lj3g3v0422690.3
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like isoform X1 [Cicer arietinum] gi|502177149|ref|XP_004516018.1| chr3 3675997 3679597 -
2 domain predictions
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Lj3g3v0424180.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140-like isoform X2 [Cicer arietinum] gi|502177298|ref|XP_004516050.1| chr3 3808376 3823300 +
2 domain predictions
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Lj3g3v0428460.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840-like [Glycine max] gi|356543219|ref|XP_003540060.1| chr3 3943927 3946019 +
2 domain predictions
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Lj3g3v0449860.2
n.a. Neurobeachin-like protein [Medicago truncatula] gi|357506993|ref|XP_003623785.1| chr3 4698234 4704880 -
2 domain predictions
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Lj3g3v0461230.1
n.a. Uncharacterized protein TCM_011920 [Theobroma cacao] gi|508710336|gb|EOY02233.1| chr3 4827376 4829984 -
2 domain predictions
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Lj3g3v0669180.1
n.a. Kinase family protein [Theobroma cacao] gi|508720931|gb|EOY12828.1| chr3 7306695 7308129 +
2 domain predictions
 –
Lj3g3v0685950.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356514866|ref|XP_003526123.1| chr3 7565909 7570099 +
2 domain predictions
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Lj3g3v0999850.1
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230-like [Glycine max] gi|356528726|ref|XP_003532950.1| chr3 13340877 13345645 +
2 domain predictions
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Lj3g3v0999850.2
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230-like [Glycine max] gi|356555150|ref|XP_003545899.1| chr3 13340877 13345645 +
2 domain predictions
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Lj3g3v1063660.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840-like [Glycine max] gi|356543219|ref|XP_003540060.1| chr3 14323851 14327961 +
2 domain predictions
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Lj3g3v1064880.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430-like [Cicer arietinum] gi|502164784|ref|XP_004513262.1| chr3 14387389 14396170 -
2 domain predictions
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Lj3g3v1064900.1
n.a. Receptor-like serine/threonine kinase [Medicago truncatula] gi|357516275|ref|XP_003628426.1| chr3 14401315 14410667 +
2 domain predictions
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Lj3g3v1064900.2
n.a. Receptor-like serine/threonine kinase [Medicago truncatula] gi|357516275|ref|XP_003628426.1| chr3 14404438 14420824 +
2 domain predictions
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Lj3g3v1064900.3
n.a. PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840-like [Glycine max] gi|356495007|ref|XP_003516372.1| chr3 14411702 14419832 +
2 domain predictions
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Lj3g3v1089410.1
n.a. protein kinase family protein precursor [Glycine max] gi|351725463|ref|NP_001237605.1| chr3 14617129 14620084 -
2 domain predictions
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Lj3g3v1239980.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] gi|356542792|ref|XP_003539849.1| chr3 16187174 16191539 -
2 domain predictions
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Lj3g3v1261130.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] gi|356542042|ref|XP_003539480.1| chr3 16271690 16275645 -
2 domain predictions
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Lj3g3v1377980.1
n.a. PREDICTED: lectin-domain containing receptor kinase VI.3-like [Glycine max] gi|356506567|ref|XP_003522051.1| chr3 17539725 17542142 -
3 domain predictions
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Lj3g3v1855390.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 10-like isoform X3 [Cicer arietinum] gi|502158354|ref|XP_004511117.1| chr3 23637901 23641007 +
2 domain predictions
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Lj3g3v1855390.2
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 10-like isoform X2 [Cicer arietinum] gi|502158352|ref|XP_004511116.1| chr3 23637901 23641007 +
2 domain predictions
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Lj3g3v2318170.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490570|dbj|BAI79272.1| chr3 28753854 28761808 -
2 domain predictions
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Lj3g3v2320700.1
n.a. PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Cucumis sativus] gi|449439978|ref|XP_004137762.1| chr3 29052089 29053753 -
3 domain predictions
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Lj3g3v2532290.1
n.a. tyrosine-sulfated glycopeptide receptor 1-like precursor [Glycine max] gi|358248614|ref|NP_001239911.1| chr3 31100718 31103526 +
2 domain predictions
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Lj3g3v2577160.1
n.a. Kinase-like protein [Medicago truncatula] gi|357514029|ref|XP_003627303.1| chr3 32023507 32025825 -
2 domain predictions
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Lj3g3v2691860.1
n.a. PREDICTED: beta-fructofuranosidase, cell wall isozyme-like isoform 1 [Glycine max] gi|356556769|ref|XP_003546695.1| chr3 32689869 32696244 -
2 domain predictions
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Lj3g3v2692990.1
n.a. PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Glycine max] gi|356522430|ref|XP_003529849.1| chr3 32791606 32797830 +
2 domain predictions
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Lj3g3v2692990.2
n.a. PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Glycine max] gi|356522430|ref|XP_003529849.1| chr3 32791606 32797830 +
2 domain predictions
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Lj3g3v2720260.1
n.a. PREDICTED: receptor-like serine/threonine-protein kinase At2g45590-like [Cicer arietinum] gi|502157826|ref|XP_004510924.1| chr3 33363406 33366872 -
2 domain predictions
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Lj3g3v2722590.1
n.a. PREDICTED: BEACH domain-containing protein lvsC-like isoform X1 [Cicer arietinum] gi|502157839|ref|XP_004510928.1| chr3 33452956 33456920 +
2 domain predictions
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Lj3g3v2723930.1
n.a. PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Glycine max] gi|356521179|ref|XP_003529235.1| chr3 33568023 33570933 +
3 domain predictions
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Lj3g3v2809410.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase VII.2-like [Glycine max] gi|356547003|ref|XP_003541908.1| chr3 34518533 34520736 -
3 domain predictions
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Lj3g3v2809600.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase VII.2-like [Glycine max] gi|356547001|ref|XP_003541907.1| chr3 34531898 34537946 -
3 domain predictions
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Lj3g3v2809610.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase VII.2-like [Glycine max] gi|356547001|ref|XP_003541907.1| chr3 34535328 34537946 -
3 domain predictions
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Lj3g3v2887100.2
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356514870|ref|XP_003526125.1| chr3 35627219 35630129 +
2 domain predictions
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Lj3g3v2887190.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Cicer arietinum] gi|502165385|ref|XP_004513556.1| chr3 35653399 35656512 -
2 domain predictions
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Lj3g3v2888270.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230-like [Cicer arietinum] gi|502165379|ref|XP_004513553.1| chr3 35692151 35699684 +
2 domain predictions
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Lj3g3v2888270.2
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230-like [Cicer arietinum] gi|502165379|ref|XP_004513553.1| chr3 35692151 35699684 +
2 domain predictions
 –
Lj3g3v2888290.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230-like [Glycine max] gi|356544860|ref|XP_003540865.1| chr3 35706091 35711245 +
2 domain predictions
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Lj3g3v2888600.1
n.a. PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9-like [Glycine max] gi|356542852|ref|XP_003539879.1| chr3 35831869 35834571 +
3 domain predictions
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Lj3g3v2948570.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] gi|356542792|ref|XP_003539849.1| chr3 36724223 36728588 +
2 domain predictions
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Lj3g3v3053400.1
n.a. PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32-like [Glycine max] gi|356542666|ref|XP_003539787.1| chr3 38090971 38093058 -
3 domain predictions
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Lj3g3v3053400.2
n.a. PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32-like [Glycine max] gi|356542666|ref|XP_003539787.1| chr3 38090971 38093900 -
3 domain predictions
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Lj3g3v3080210.1
n.a. n.a. chr3 38427883 38431559 -
2 domain predictions
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Lj3g3v3117630.1
n.a. PREDICTED: probable serine/threonine-protein kinase RLCKVII-like [Glycine max] gi|356542581|ref|XP_003539745.1| chr3 38936136 38940073 +
2 domain predictions
 –