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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1239980 |
| Transcript ID | Lj3g3v1239980.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] gi|356542792|ref|XP_003539849.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 1 | 23 | 23 | – | – | |
| SignalP | 1 | 23 | 23 | – | – | |
| TMHMM | 4 | 23 | 20 | – | – | |
| Phobius | 4 | 15 | 12 | – | – | |
| PANTHER | 8 | 127 | 120 | 0 | – | |
| PANTHER | 8 | 127 | 120 | 0 | – | |
| Phobius | 16 | 23 | 8 | – | – | |
| Phobius | 24 | 525 | 502 | – | – | |
| SUPERFAMILY | 26 | 305 | 280 | 8.50E-40 | ||
| Pfam | 27 | 67 | 41 | 3.50E-05 | ||
| Gene3D | 27 | 304 | 278 | 2.80E-45 | ||
| SMART | 92 | 114 | 23 | 53 | ||
| SMART | 115 | 138 | 24 | 38 | ||
| PANTHER | 230 | 320 | 91 | 0 | – | |
| PANTHER | 230 | 320 | 91 | 0 | – | |
| SMART | 264 | 287 | 24 | 1.3 | ||
| SUPERFAMILY | 330 | 437 | 108 | 1.22E-13 | ||
| Pfam | 330 | 368 | 39 | 0.0029 | ||
| Gene3D | 331 | 437 | 107 | 1.00E-14 | ||
| PANTHER | 430 | 453 | 24 | 0 | – | |
| PANTHER | 430 | 453 | 24 | 0 | – | |
| MobiDBLite | 456 | 507 | 52 | – | – | |
| PANTHER | 474 | 503 | 30 | 0 | – | |
| PANTHER | 474 | 503 | 30 | 0 | – | |
| Gene3D | 492 | 572 | 81 | 8.50E-09 | ||
| PANTHER | 520 | 557 | 38 | 0 | – | |
| PANTHER | 520 | 557 | 38 | 0 | – | |
| TMHMM | 525 | 547 | 23 | – | – | |
| Phobius | 526 | 550 | 25 | – | – | |
| Phobius | 551 | 976 | 426 | – | – | |
| PANTHER | 595 | 939 | 345 | 0 | – | |
| PANTHER | 595 | 939 | 345 | 0 | – | |
| Gene3D | 604 | 636 | 33 | 8.50E-09 | ||
| SUPERFAMILY | 610 | 906 | 297 | 1.75E-74 | ||
| SMART | 630 | 907 | 278 | 4.00E-34 | ||
| ProSiteProfiles | 630 | 910 | 281 | 37.658 | ||
| Pfam | 633 | 904 | 272 | 8.80E-46 | ||
| CDD | 636 | 906 | 271 | 1.63E-89 | – | |
| ProSitePatterns | 636 | 658 | 23 | – | ||
| Gene3D | 637 | 693 | 57 | 5.60E-24 | – | |
| Gene3D | 694 | 905 | 212 | 2.40E-40 | – | |
| ProSitePatterns | 755 | 767 | 13 | – | ||
| MobiDBLite | 947 | 976 | 30 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of Lj3g3v1239980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1239980.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.