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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032675
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 2134 results. Now displaying 2 of 43 with 50 rows per page. This search has taken 7.532s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0064119.3
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 22003038 22014728 -
3 domain predictions
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Lj0g3v0064859.1
n.a. PREDICTED: FBD-associated F-box protein At4g10400-like [Cicer arietinum] gi|502131855|ref|XP_004501125.1| chr0 22485612 22488620 -
2 domain predictions
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Lj0g3v0065099.1
n.a. coronatine-insensitive 1 [Glycine max] gi|351724347|ref|NP_001238590.1| chr0 22631593 22634726 +
2 domain predictions
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Lj0g3v0065509.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 22791557 22792793 -
2 domain predictions
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Lj0g3v0065639.2
n.a. PREDICTED: somatic embryogenesis receptor kinase 1-like [Glycine max] gi|356576127|ref|XP_003556185.1| chr0 22860880 22867426 -
3 domain predictions
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Lj0g3v0065659.1
n.a. Cyclin-like F-box [Medicago truncatula] gi|124359880|gb|ABD32480.2| chr0 22888622 22889518 +
2 domain predictions
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Lj0g3v0066329.1
n.a. PREDICTED: leucine-rich repeat protein lrrA-like [Glycine max] gi|356563459|ref|XP_003549980.1| chr0 23306016 23308882 +
3 domain predictions
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Lj0g3v0066349.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2-like [Cicer arietinum] gi|502134366|ref|XP_004502093.1| chr0 23322310 23323491 +
3 domain predictions
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Lj0g3v0067549.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1-like [Glycine max] gi|356516754|ref|XP_003527058.1| chr0 23998624 24003883 -
3 domain predictions
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Lj0g3v0067549.2
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1-like [Glycine max] gi|356516754|ref|XP_003527058.1| chr0 23998624 24003883 -
3 domain predictions
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Lj0g3v0070409.1
n.a. FBD-associated F-box protein [Medicago truncatula] gi|357465187|ref|XP_003602875.1| chr0 25663214 25664196 -
2 domain predictions
 –
Lj0g3v0073339.1
n.a. PREDICTED: EIN3-binding F-box protein 1-like isoform 1 [Glycine max] gi|356507724|ref|XP_003522614.1| chr0 27484178 27487669 -
2 domain predictions
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Lj0g3v0073579.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like [Glycine max] gi|356551958|ref|XP_003544339.1| chr0 27615994 27623359 +
3 domain predictions
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Lj0g3v0073579.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like isoform X1 [Cicer arietinum] gi|502096414|ref|XP_004490730.1| chr0 27615994 27623359 +
3 domain predictions
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Lj0g3v0073579.3
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like [Glycine max] gi|356551958|ref|XP_003544339.1| chr0 27615994 27623359 +
3 domain predictions
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Lj0g3v0075369.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Cicer arietinum] gi|502135214|ref|XP_004502257.1| chr0 28565917 28573472 +
3 domain predictions
 –
Lj0g3v0075849.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357490913|ref|XP_003615744.1| chr0 28859672 28863305 +
3 domain predictions
 –
Lj0g3v0076589.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357491185|ref|XP_003615880.1| chr0 29233164 29234464 +
2 domain predictions
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Lj0g3v0077509.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356551688|ref|XP_003544206.1| chr0 29748259 29748644 +
3 domain predictions
 –
Lj0g3v0077519.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356561444|ref|XP_003548991.1| chr0 29748725 29749878 +
3 domain predictions
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Lj0g3v0078799.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357513193|ref|XP_003626885.1| chr0 30375476 30377600 -
3 domain predictions
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Lj0g3v0084449.1
n.a. PREDICTED: probable disease resistance protein At5g66900-like [Glycine max] gi|356565670|ref|XP_003551061.1| chr0 33585007 33588459 -
2 domain predictions
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Lj0g3v0086179.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 34701463 34703243 +
2 domain predictions
 –
Lj0g3v0086719.1
n.a. PREDICTED: somatic embryogenesis receptor kinase 4-like [Glycine max] gi|356559929|ref|XP_003548248.1| chr0 35046088 35050220 -
3 domain predictions
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Lj0g3v0086869.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357469105|ref|XP_003604837.1| chr0 35135538 35138045 +
2 domain predictions
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Lj0g3v0086869.2
n.a. PREDICTED: F-box protein At-B-like [Glycine max] gi|356522300|ref|XP_003529785.1| chr0 35135538 35138045 +
2 domain predictions
 –
Lj0g3v0086889.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357469105|ref|XP_003604837.1| chr0 35142447 35145064 +
2 domain predictions
 –
Lj0g3v0087049.1
n.a. receptor-like protein kinase 2 precursor [Glycine max] gi|351721253|ref|NP_001237715.1| chr0 35240324 35244693 -
3 domain predictions
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Lj0g3v0087299.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 35446029 35447514 +
2 domain predictions
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Lj0g3v0087809.1
n.a. NB-LRR type disease resistance protein Rps1-k-2 [Medicago truncatula] gi|357457003|ref|XP_003598782.1| chr0 35782638 35786831 +
3 domain predictions
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Lj0g3v0088499.1
n.a. PREDICTED: leucine-rich repeat extensin-like protein 5-like, partial [Cucumis sativus] gi|449533433|ref|XP_004173680.1| chr0 36157709 36161359 -
3 domain predictions
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Lj0g3v0089099.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 36504377 36505985 +
2 domain predictions
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Lj0g3v0089419.1
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr0 36683462 36684429 +
2 domain predictions
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Lj0g3v0090429.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Cicer arietinum] gi|502148812|ref|XP_004507279.1| chr0 37251752 37254617 -
3 domain predictions
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Lj0g3v0090439.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Cicer arietinum] gi|502148812|ref|XP_004507279.1| chr0 37254703 37257214 -
3 domain predictions
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Lj0g3v0092059.1
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr0 38246350 38246946 +
2 domain predictions
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Lj0g3v0092599.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At1g78750-like [Glycine max] gi|356515744|ref|XP_003526558.1| chr0 38616544 38617870 -
2 domain predictions
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Lj0g3v0093209.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357458673|ref|XP_003599617.1| chr0 38948628 38950690 -
2 domain predictions
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Lj0g3v0093219.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357458673|ref|XP_003599617.1| chr0 38948733 38951143 -
2 domain predictions
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Lj0g3v0094389.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At1g50610-like [Cicer arietinum] gi|502089636|ref|XP_004488972.1| chr0 39688550 39691233 +
3 domain predictions
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Lj0g3v0095239.1
n.a. n.a. chr0 40108382 40114953 +
3 domain predictions
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Lj0g3v0095249.1
n.a. PREDICTED: TMV resistance protein N-like [Cicer arietinum] gi|502156468|ref|XP_004510489.1| chr0 40108382 40114953 -
3 domain predictions
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Lj0g3v0095829.1
n.a. PREDICTED: receptor-like protein 12-like [Cicer arietinum] gi|502177353|ref|XP_004516064.1| chr0 40361351 40362249 -
3 domain predictions
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Lj0g3v0095839.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495069|ref|XP_003516403.1| chr0 40362218 40363688 -
3 domain predictions
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Lj0g3v0099979.1
n.a. coronatine-insensitive 1 [Glycine max] gi|351724347|ref|NP_001238590.1| chr0 42424490 42426877 +
2 domain predictions
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Lj0g3v0100439.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357471389|ref|XP_003605979.1| chr0 42471557 42472092 -
3 domain predictions
 –
Lj0g3v0100639.1
n.a. n.a. chr0 42535737 42541606 -
3 domain predictions
 –
Lj0g3v0100639.2
n.a. n.a. chr0 42535737 42541606 -
3 domain predictions
 –
Lj0g3v0101439.1
n.a. TMV resistance protein N [Medicago truncatula] gi|357509247|ref|XP_003624912.1| chr0 43038093 43048258 -
3 domain predictions
 –
Lj0g3v0101439.2
n.a. TMV resistance protein N [Medicago truncatula] gi|357469545|ref|XP_003605057.1| chr0 43038093 43052614 -
3 domain predictions
 –