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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004864
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 112 results. Now displaying 3 of 3 with 50 rows per page. This search has taken 5.854s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi5g1v0104500.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT3G11660.1 NDR1/HIN1-like 1; Swiss-Prot: sp|Q9SRN0|NHL1_ARATH NDR1/HIN1-like protein 1; TrEMBL-Plants: tr|A0A151T530|A0A151T530_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0104500 LjG1.1_chr5 19436477 19439538 -
2 domain predictions
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LotjaGi5g1v0198600.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein; TAIR: AT5G36970.1 NDR1/HIN1-like 25; Swiss-Prot: sp|Q9ZVD2|NHL13_ARATH NDR1/HIN1-like protein 13; TrEMBL-Plants: tr|V7CTP7|V7CTP7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0198600 LjG1.1_chr5 49615962 49617981 +
2 domain predictions
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LotjaGi5g1v0318400.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT4G05220.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SRN0|NHL1_ARATH NDR1/HIN1-like protein 1; TrEMBL-Plants: tr|I1NG91|I1NG91_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0318400 LjG1.1_chr5 63591852 63593030 +
2 domain predictions
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LotjaGi6g1v0044800.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G30505.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160; TrEMBL-Plants: tr|G7IV44|G7IV44_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi6g1v0044800 LjG1.1_chr6 8414498 8417487 -
2 domain predictions
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LotjaGi6g1v0047800.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein; TAIR: AT1G65690.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9ZVD2|NHL13_ARATH NDR1/HIN1-like protein 13; TrEMBL-Plants: tr|I3S471|I3S471_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0047800 LjG1.1_chr6 8757553 8759546 +
2 domain predictions
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LotjaGi6g1v0139000.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family member; TAIR: AT4G26490.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SRN1|NHL2_ARATH NDR1/HIN1-like protein 2; TrEMBL-Plants: tr|A0A0L9TDN6|A0A0L9TDN6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0139000 LjG1.1_chr6 40414938 40418096 +
2 domain predictions
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LotjaGi6g1v0186500.1
n.a. Late embryogenesis abundant protein Lea14; TAIR: AT2G44060.1 Late embryogenesis abundant protein, group 2; Swiss-Prot: sp|P46519|LEA14_SOYBN Desiccation protectant protein Lea14 homolog; TrEMBL-Plants: tr|C6T750|C6T750_SOYBN Late-embryogenesis abundant protein 2; Found in the gene: LotjaGi6g1v0186500 LjG1.1_chr6 48043350 48046875 +
2 domain predictions
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LotjaGi6g1v0186500.2
n.a. Late embryogenesis abundant protein Lea14; TAIR: AT2G44060.1 Late embryogenesis abundant protein, group 2; Swiss-Prot: sp|P46519|LEA14_SOYBN Desiccation protectant protein Lea14 homolog; TrEMBL-Plants: tr|C6T750|C6T750_SOYBN Late-embryogenesis abundant protein 2; Found in the gene: LotjaGi6g1v0186500 LjG1.1_chr6 48044089 48045257 +
2 domain predictions
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LotjaGi6g1v0191700.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G27080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9ZVD2|NHL13_ARATH NDR1/HIN1-like protein 13; TrEMBL-Plants: tr|V7B6M9|V7B6M9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0191700 LjG1.1_chr6 48814444 48815836 +
2 domain predictions
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LotjaGi6g1v0271300.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G01080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SRN1|NHL2_ARATH NDR1/HIN1-like protein 2; TrEMBL-Plants: tr|A0A067EH55|A0A067EH55_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0271300 LjG1.1_chr6 58564552 58565719 -
2 domain predictions
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LotjaGi6g1v0271700_LC.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G01080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9ZVD2|NHL13_ARATH NDR1/HIN1-like protein 13; TrEMBL-Plants: tr|A0A067EH55|A0A067EH55_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0271700_LC LjG1.1_chr6 58619097 58620237 -
2 domain predictions
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LotjaGi6g1v0342800.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative; TAIR: AT5G22870.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160; TrEMBL-Plants: tr|A0A0L9VFT4|A0A0L9VFT4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0342800 LjG1.1_chr6 65584402 65585007 +
2 domain predictions
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