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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008972
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 246 results. Now displaying 5 of 5 with 50 rows per page. This search has taken 5.450s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi4g1v0273100.1
n.a. Blue copper protein; TAIR: AT2G26720.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q41001|BCP_PEA Blue copper protein; TrEMBL-Plants: tr|I3RZH2|I3RZH2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0273100 LjG1.1_chr4 64207540 64209246 +
3 domain predictions
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LotjaGi4g1v0273200.1
n.a. Blue copper protein; TAIR: AT2G32300.1 uclacyanin 1; Swiss-Prot: sp|Q41001|BCP_PEA Blue copper protein; TrEMBL-Plants: tr|I3RZH2|I3RZH2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0273200 LjG1.1_chr4 64217241 64218601 +
3 domain predictions
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LotjaGi4g1v0273300.1
n.a. Blue copper protein; TAIR: AT5G20230.1 blue-copper-binding protein; Swiss-Prot: sp|Q07488|BCB1_ARATH Blue copper protein; TrEMBL-Plants: tr|A0A0L9TRH6|A0A0L9TRH6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0273300 LjG1.1_chr4 64240412 64243245 +
3 domain predictions
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LotjaGi4g1v0288300.1
n.a. Early nodulin-like protein; TAIR: AT2G25060.1 early nodulin-like protein 14; Swiss-Prot: sp|P93328|NO16_MEDTR Early nodulin-16; TrEMBL-Plants: tr|I3S314|I3S314_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0288300 LjG1.1_chr4 66059579 66062771 -
3 domain predictions
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LotjaGi4g1v0389200.1
n.a. Basic blue protein; TAIR: AT2G02850.1 plantacyanin; Swiss-Prot: sp|Q8LG89|BABL_ARATH Basic blue protein; TrEMBL-Plants: tr|I3S7Z7|I3S7Z7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0389200 LjG1.1_chr4 76751685 76753497 -
3 domain predictions
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LotjaGi4g1v0389300.1
n.a. Basic blue-like protein; TAIR: AT2G02850.1 plantacyanin; Swiss-Prot: sp|Q8LG89|BABL_ARATH Basic blue protein; TrEMBL-Plants: tr|I3SED8|I3SED8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0389300 LjG1.1_chr4 76755861 76757766 -
3 domain predictions
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LotjaGi4g1v0400500.1
n.a. L-ascorbate oxidase; TAIR: AT4G39830.1 Cupredoxin superfamily protein; Swiss-Prot: sp|P24792|ASO_CUCMA L-ascorbate oxidase; TrEMBL-Plants: tr|A0A0B2S1B6|A0A0B2S1B6_GLYSO L-ascorbate oxidase; Found in the gene: LotjaGi4g1v0400500 LjG1.1_chr4 77786613 77790178 +
3 domain predictions
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LotjaGi4g1v0432800.1
n.a. Early nodulin-like protein; TAIR: AT2G25060.1 early nodulin-like protein 14; Swiss-Prot: sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1; TrEMBL-Plants: tr|I1K6B4|I1K6B4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0432800 LjG1.1_chr4 80727336 80728403 -
3 domain predictions
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LotjaGi4g1v0462700.1
n.a. Laccase; TAIR: AT1G18140.1 laccase 1; Swiss-Prot: sp|Q9LMS3|LAC1_ARATH Laccase-1; TrEMBL-Plants: tr|M5WFA5|M5WFA5_PRUPE Laccase; Found in the gene: LotjaGi4g1v0462700 LjG1.1_chr4 83303884 83307986 -
3 domain predictions
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LotjaGi5g1v0001500.1
n.a. L-ascorbate oxidase like; TAIR: AT1G76160.1 SKU5 similar 5; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A072VFN2|A0A072VFN2_MEDTR Multi-copper oxidase-like protein; Found in the gene: LotjaGi5g1v0001500 LjG1.1_chr5 272184 278998 +
3 domain predictions
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LotjaGi5g1v0001500.2
n.a. L-ascorbate oxidase like; TAIR: AT1G41830.1 SKU5-similar 6; Swiss-Prot: sp|P29162|ASOL_TOBAC L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A072VFN2|A0A072VFN2_MEDTR Multi-copper oxidase-like protein; Found in the gene: LotjaGi5g1v0001500 LjG1.1_chr5 272682 274268 +
3 domain predictions
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LotjaGi5g1v0001500.3
n.a. L-ascorbate oxidase like; TAIR: AT1G76160.1 SKU5 similar 5; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|I1MBZ7|I1MBZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0001500 LjG1.1_chr5 276129 278482 +
3 domain predictions
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LotjaGi5g1v0001500.4
n.a. L-ascorbate oxidase like; TAIR: AT1G76160.1 SKU5 similar 5; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|I1MBZ7|I1MBZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0001500 LjG1.1_chr5 276504 278482 +
3 domain predictions
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LotjaGi5g1v0052500.1
n.a. Early nodulin-like protein; TAIR: AT2G25060.1 early nodulin-like protein 14; Swiss-Prot: sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1; TrEMBL-Plants: tr|A0A151TZ59|A0A151TZ59_CAJCA Early nodulin-like protein 1; Found in the gene: LotjaGi5g1v0052500 LjG1.1_chr5 8783510 8787294 +
3 domain predictions
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LotjaGi5g1v0083700_LC.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0083700_LC LjG1.1_chr5 14093235 14093761 -
2 domain predictions
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LotjaGi5g1v0122800.1
n.a. Cytochrome c oxidase subunit 2; TAIR: ATMG00160.1 cytochrome oxidase 2 (ChrM); Swiss-Prot: sp|P05491|COX2_SOYBN Cytochrome c oxidase subunit 2; TrEMBL-Plants: tr|R4IUC9|R4IUC9_VICFA Cytochrome c oxidase subunit 2; Found in the gene: LotjaGi5g1v0122800 LjG1.1_chr5 25879622 25888563 -
3 domain predictions
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LotjaGi5g1v0199700.1
n.a. Early nodulin-like protein 1; TAIR: AT1G64640.1 early nodulin-like protein 8; Swiss-Prot: sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3; TrEMBL-Plants: tr|I3SQK2|I3SQK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0199700 LjG1.1_chr5 49757985 49759645 -
3 domain predictions
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LotjaGi5g1v0254500.1
n.a. Monocopper oxidase-like protein SKU5; TAIR: AT1G21850.1 SKU5 similar 8; Swiss-Prot: sp|Q9SU40|SKU5_ARATH Monocopper oxidase-like protein SKU5; TrEMBL-Plants: tr|A0A0B2NUZ0|A0A0B2NUZ0_GLYSO Monocopper oxidase-like protein SKU5; Found in the gene: LotjaGi5g1v0254500 LjG1.1_chr5 56349195 56353118 +
3 domain predictions
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LotjaGi5g1v0254500.2
n.a. Laccase/Diphenol oxidase family protein; TAIR: AT5G48450.1 SKU5 similar 3; Swiss-Prot: sp|Q9SU40|SKU5_ARATH Monocopper oxidase-like protein SKU5; TrEMBL-Plants: tr|A0A0B2NUZ0|A0A0B2NUZ0_GLYSO Monocopper oxidase-like protein SKU5; Found in the gene: LotjaGi5g1v0254500 LjG1.1_chr5 56349195 56353118 +
3 domain predictions
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LotjaGi5g1v0254500.3
n.a. Monocopper oxidase-like protein SKU5; TAIR: AT4G12420.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q9SU40|SKU5_ARATH Monocopper oxidase-like protein SKU5; TrEMBL-Plants: tr|A0A0B2NUZ0|A0A0B2NUZ0_GLYSO Monocopper oxidase-like protein SKU5; Found in the gene: LotjaGi5g1v0254500 LjG1.1_chr5 56350978 56352475 +
3 domain predictions
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LotjaGi5g1v0257500.1
n.a. Blue copper protein; TAIR: AT5G07475.1 Cupredoxin superfamily protein; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|I3SPD4|I3SPD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0257500 LjG1.1_chr5 56632844 56636528 +
3 domain predictions
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LotjaGi5g1v0283500.1
n.a. Laccase; TAIR: AT5G09360.1 laccase 14; Swiss-Prot: sp|Q6Z8L2|LAC9_ORYSJ Putative laccase-9; TrEMBL-Plants: tr|A0A1J7FTU7|A0A1J7FTU7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0283500 LjG1.1_chr5 59998333 60001164 -
3 domain predictions
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LotjaGi5g1v0283600.1
n.a. Laccase; TAIR: AT5G09360.1 laccase 14; Swiss-Prot: sp|Q9FY79|LAC14_ARATH Laccase-14; TrEMBL-Plants: tr|A0A1J7FTU7|A0A1J7FTU7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0283600 LjG1.1_chr5 60032525 60035721 -
3 domain predictions
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LotjaGi5g1v0283700.1
n.a. Laccase; TAIR: AT5G09360.1 laccase 14; Swiss-Prot: sp|Q9FY79|LAC14_ARATH Laccase-14; TrEMBL-Plants: tr|A0A1J7FTU7|A0A1J7FTU7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0283700 LjG1.1_chr5 60041611 60043741 -
3 domain predictions
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LotjaGi5g1v0283800.1
n.a. Laccase; TAIR: AT5G48100.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|Q84J37|LAC15_ARATH Laccase-15; TrEMBL-Plants: tr|G7J6C9|G7J6C9_MEDTR Laccase; Found in the gene: LotjaGi5g1v0283800 LjG1.1_chr5 60049945 60053273 +
3 domain predictions
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LotjaGi5g1v0289800.1
n.a. Early nodulin-like protein 1; TAIR: AT1G21090.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1; TrEMBL-Plants: tr|I3T8U8|I3T8U8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0289800 LjG1.1_chr5 60650076 60652664 -
3 domain predictions
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LotjaGi5g1v0289800.2
n.a. Early nodulin-like protein 1; TAIR: AT1G21090.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1; TrEMBL-Plants: tr|I3T8U8|I3T8U8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0289800 LjG1.1_chr5 60650076 60652664 -
3 domain predictions
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LotjaGi5g1v0315800.1
n.a. Blue copper protein; TAIR: AT5G26330.1 Cupredoxin superfamily protein; Swiss-Prot: sp|P80728|MAVI_CUCPE Mavicyanin; TrEMBL-Plants: tr|I3T2Y6|I3T2Y6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0315800 LjG1.1_chr5 63361958 63375087 +
3 domain predictions
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LotjaGi5g1v0329600.1
n.a. Laccase; TAIR: AT1G71040.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q949X9|LPR2_ARATH Multicopper oxidase LPR2; TrEMBL-Plants: tr|I1NFV5|I1NFV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0329600 LjG1.1_chr5 64666802 64670903 -
3 domain predictions
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LotjaGi5g1v0329700.1
n.a. Laccase; TAIR: AT1G71040.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q949X9|LPR2_ARATH Multicopper oxidase LPR2; TrEMBL-Plants: tr|A0A151U7V8|A0A151U7V8_CAJCA Spore coat protein A; Found in the gene: LotjaGi5g1v0329700 LjG1.1_chr5 64679943 64684942 -
3 domain predictions
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LotjaGi5g1v0349100.1
n.a. Blue copper-like protein; TAIR: AT3G17675.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q41001|BCP_PEA Blue copper protein; TrEMBL-Plants: tr|K7LLY0|K7LLY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0349100 LjG1.1_chr5 66467495 66468834 -
3 domain predictions
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LotjaGi6g1v0024600.1
n.a. L-ascorbate oxidase like; TAIR: AT1G55570.1 SKU5 similar 12; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|I1LN08|I1LN08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0024600 LjG1.1_chr6 4463766 4467598 +
3 domain predictions
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LotjaGi6g1v0031600.1
n.a. L-ascorbate oxidase-like protein; TAIR: AT1G55570.1 SKU5 similar 12; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A0L9TAI7|A0A0L9TAI7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0031600 LjG1.1_chr6 5922148 5924514 +
3 domain predictions
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LotjaGi6g1v0031900.1
n.a. L-ascorbate oxidase-like protein; TAIR: AT1G55570.1 SKU5 similar 12; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|I3S074|I3S074_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0031900 LjG1.1_chr6 5990859 5993082 +
3 domain predictions
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LotjaGi6g1v0080700.1
n.a. Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9SIY8|LAC5_ARATH Laccase-5; TrEMBL-Plants: tr|I1MYY9|I1MYY9_SOYBN Laccase; Found in the gene: LotjaGi6g1v0080700 LjG1.1_chr6 15436690 15441163 -
3 domain predictions
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LotjaGi6g1v0080700.2
n.a. Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9FLB5|LAC12_ARATH Laccase-12; TrEMBL-Plants: tr|A0A0B2PB28|A0A0B2PB28_GLYSO Laccase; Found in the gene: LotjaGi6g1v0080700 LjG1.1_chr6 15436894 15440867 -
3 domain predictions
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LotjaGi6g1v0080700.3
n.a. Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9FLB5|LAC12_ARATH Laccase-12; TrEMBL-Plants: tr|A0A0B2PB28|A0A0B2PB28_GLYSO Laccase; Found in the gene: LotjaGi6g1v0080700 LjG1.1_chr6 15437121 15440767 -
3 domain predictions
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LotjaGi6g1v0080700.4
n.a. Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9FLB5|LAC12_ARATH Laccase-12; TrEMBL-Plants: tr|I1MYY9|I1MYY9_SOYBN Laccase; Found in the gene: LotjaGi6g1v0080700 LjG1.1_chr6 15437121 15440819 -
3 domain predictions
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LotjaGi6g1v0089600.1
n.a. Basic blue protein; TAIR: AT2G02850.1 plantacyanin; Swiss-Prot: sp|P00303|BABL_CUCSA Basic blue protein; TrEMBL-Plants: tr|I3SCS8|I3SCS8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0089600 LjG1.1_chr6 19024073 19026754 -
3 domain predictions
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LotjaGi6g1v0132300.1
n.a. Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 LjG1.1_chr6 38137384 38142281 +
3 domain predictions
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LotjaGi6g1v0132300.2
n.a. Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 LjG1.1_chr6 38137454 38140864 +
3 domain predictions
 –
LotjaGi6g1v0132300.3
n.a. Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 LjG1.1_chr6 38138235 38140864 +
3 domain predictions
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LotjaGi6g1v0132300.4
n.a. Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 LjG1.1_chr6 38138330 38140864 +
3 domain predictions
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LotjaGi6g1v0191100.1
n.a. L-ascorbate oxidase; TAIR: AT5G21105.1 Plant L-ascorbate oxidase; Swiss-Prot: sp|Q40588|ASO_TOBAC L-ascorbate oxidase; TrEMBL-Plants: tr|A0A0B2RL59|A0A0B2RL59_GLYSO L-ascorbate oxidase; Found in the gene: LotjaGi6g1v0191100 LjG1.1_chr6 48750965 48756974 +
3 domain predictions
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LotjaGi6g1v0287400.1
n.a. Blue copper protein; TAIR: AT2G32300.2 uclacyanin 1; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|I3RZY0|I3RZY0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0287400 LjG1.1_chr6 60484738 60486352 -
3 domain predictions
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LotjaGi6g1v0293600_LC.1
n.a. L-ascorbate oxidase; TAIR: AT4G22010.1 SKU5 similar 4; Swiss-Prot: sp|P29162|ASOL_TOBAC L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A068UR68|A0A068UR68_COFCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0293600_LC LjG1.1_chr6 61137413 61138489 -
3 domain predictions
 –