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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0132300 |
| Transcript ID | LotjaGi6g1v0132300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38138330..38140864) extracted from Lotus japonicus Gifu genome v1.2.
AACAGCAAGGTGGGTGTTGAATTGTTGAGCAAGGCACTTAAATTTGGTACACATGTTAGTTACACTTTCTCCTTCTTGTT GTTGAGTACAGGTGGTGATGAAAAATGCCACAAGATTGTGTTCAACCAAGCCCATTGTCACTGTAAATGGGAAGTTCCCA GGCCCCACCATCTATGCTAGGGAAGATGACACTGTTCTGATTAAGGTGGTTAACCATGTCAAATACAATGTCAGCATCCA CTGGTGTGTGTTAGCTTCAGTCATTCAAATCTCAAATTTTTCTGCCATTTTCTTTTTCTTTTGTAAAACTGATTAAATGA ATTTTGTATGAACAGGCATGGGGTCAGACAACTAAGAACTGGTTGGGCTGATGGGCCTGCATTCATAACCCAATGCCCAA TTCAACCGGGCCAGGTCTATCTGTACAACTTCACCCTAACAGGCCAAAGAGGCACACTTTGGTGGCATGCACATATCTTG TGGCTTAGGGCCACTGTTCATGGGGCCATAGTCATCTTGCCCAAGCTTGGAGTTCCTTACCCTTTTCCCAAACCCCATAT GGAGCAAGTTATCTTATTGAGTAAGTTCTCCTACCCTTTTCTTTACCTGCTAAACATTTATCTTTTATGAATTTTTAAGC TATGTTTGGATTCCTGTTAGCACCGATGCAAATGGACAATAGCACTCGCTTCAAGATTAAAAGTGAACGAGTTTTTCTTA TGGATTGGGTTTAATGTCATAAAATTGCACTCAACTAATATCCAAACACACAAATAACCATGAATTAGGGGAAAGAACAT TAATGTCTCCCTTGATTAGTCCAATAAAATAGAAAGCATAATTCATATAATTATATTTCATAATTCTCACTGTATTTTAC TATGGTTCAGGTGAATGGTGGAAATCAGATACTGAGGCTGTGATAAATGAAGCTTTGAAATCTGGTTTGGCCCCAAATGT CTCTGATGCCCACACAATCAATGGCCATCCAGGGTCTGTCCAAGGCTGTACTTCACAAGGTGAAGTTCAAGAACAAAGCT CTATAGCTTTTTGCATAATTAGACCAAGCTCCATGTGACTCAAAACCTTAAAATTAACAAGTTTATCTTGGCACTTCAAG GCAAAAGTGGGAAAATGATTAGTTTTCAGTTAATTTCTCAAAATACTGAGATTGAGTAGAGTTTTCAATTTTCTCATCTT TCTTTTGTGTGCAGGAGGGTTTACACTTGATGTTCAGCCTGGAAACACCTACTTGCTAAGAATCATCAATGCTGCACTCA ATGAAGAGCTCTTCTTCAAGATTGCCGGCCATCAACTAACTGTTGTAGAGGTTGATGCCGCCTACACAAAACCCTTCAAA ACTGATACCGTTGTTATAGCACCAGGCCAGACCACAAATGTGCTTCTAACTGCCACACATGCAACTGGCAAATACTTGGT TGCAGCATCTCCTTTCATGGATGCTCCTATTACAGTTGACAACAGAACAGCCACTGCCGCATTACACTATTCGGGCACCC TTGGTTCCACCATCACCACCCTCACTACCTTGCCTCCTACAAATGCCACTCCAGTTGCTACTACCTTCACAGACTCTCTC AGAAGCTTAAACTCGAAAAGTTTCCCTGCAAGAGTCCCATTGAAGATTGACCATAACTTGCTCTTCACCGTTGGCCTTGG AATCAAACCGTGTGCTATTTGCGTGAATAATAGCCGCGTGGTCGCGGATATCAACAATGTGACCTTTGTGATGCCTAAGA TTGCTCTTCTTCAAGCACATTTCTTCAAGATTAAGGGTGTTTTCACTGATGATTTTCCTGCAAACCCTCCTGTGGTGTAT AACTTCACAGGGACACAACCAACAAATTTCAACACTATGAATGGGACAAGGCTTTATAGACTTGCTTACAACTCTACAGT TCAGTTGGTCTTGCAAGATACAGGAATGTTAACACCTGAGAACCATCCTATTCATCTCCATGGCTTCAATTTCTTTGTAG TTGGCAGGGGACAAGGGAATTTCAACCGCAAAAAGGATACCAAAAAATTCAATCTTGTAGATCCTGTGGAAAGAAACACA GTTGGTGTACCAGCTGGGGGGTGGACCGCTATCAGATTCAGAGCAGATAATCCAGGTAGAGTTATCAATTCATAGTCTGT TCGAATCAACTTTTCTTTCATGAGAAATCATTTATGAATCCCAGAAGCTACTCAGAAAAGCTTTTTGTGTACAATTTATT CTGGCTTCAGAATTGCAGAAGAGTTTTCAATTTCCAAACACGCACTAAATTGTATCTGCATTTTGAAAGTTTGATGCTAA CATATATGTAGGAAGATAAAATGATTTTAAAGTCACACTTTTTTAGTATATATGTAATTAATTTATGGTGTTCTGTTTTG TTAGGGGTGTGGTTTATGCACTGCCATTTGGAGATTCATACAACATGGGGACTGAAGATGGCATTTGTGGTGGACAATGG TAAAGGACCAAATGAATCTATATTACCACCTCCAAGGGACCTTCCCAAGTGCTGA
CDS sequence (LotjaGi6g1v0132300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAATGCCACAAGATTGTGTTCAACCAAGCCCATTGTCACTGTAAATGGGAAGTTCCCAGGCCCCACCATCTATGC TAGGGAAGATGACACTGTTCTGATTAAGGTGGTTAACCATGTCAAATACAATGTCAGCATCCACTGGCATGGGGTCAGAC AACTAAGAACTGGTTGGGCTGATGGGCCTGCATTCATAACCCAATGCCCAATTCAACCGGGCCAGGTCTATCTGTACAAC TTCACCCTAACAGGCCAAAGAGGCACACTTTGGTGGCATGCACATATCTTGTGGCTTAGGGCCACTGTTCATGGGGCCAT AGTCATCTTGCCCAAGCTTGGAGTTCCTTACCCTTTTCCCAAACCCCATATGGAGCAAGTTATCTTATTGAGTGAATGGT GGAAATCAGATACTGAGGCTGTGATAAATGAAGCTTTGAAATCTGGTTTGGCCCCAAATGTCTCTGATGCCCACACAATC AATGGCCATCCAGGGTCTGTCCAAGGCTGTACTTCACAAGGAGGGTTTACACTTGATGTTCAGCCTGGAAACACCTACTT GCTAAGAATCATCAATGCTGCACTCAATGAAGAGCTCTTCTTCAAGATTGCCGGCCATCAACTAACTGTTGTAGAGGTTG ATGCCGCCTACACAAAACCCTTCAAAACTGATACCGTTGTTATAGCACCAGGCCAGACCACAAATGTGCTTCTAACTGCC ACACATGCAACTGGCAAATACTTGGTTGCAGCATCTCCTTTCATGGATGCTCCTATTACAGTTGACAACAGAACAGCCAC TGCCGCATTACACTATTCGGGCACCCTTGGTTCCACCATCACCACCCTCACTACCTTGCCTCCTACAAATGCCACTCCAG TTGCTACTACCTTCACAGACTCTCTCAGAAGCTTAAACTCGAAAAGTTTCCCTGCAAGAGTCCCATTGAAGATTGACCAT AACTTGCTCTTCACCGTTGGCCTTGGAATCAAACCGTGTGCTATTTGCGTGAATAATAGCCGCGTGGTCGCGGATATCAA CAATGTGACCTTTGTGATGCCTAAGATTGCTCTTCTTCAAGCACATTTCTTCAAGATTAAGGGTGTTTTCACTGATGATT TTCCTGCAAACCCTCCTGTGGTGTATAACTTCACAGGGACACAACCAACAAATTTCAACACTATGAATGGGACAAGGCTT TATAGACTTGCTTACAACTCTACAGTTCAGTTGGTCTTGCAAGATACAGGAATGTTAACACCTGAGAACCATCCTATTCA TCTCCATGGCTTCAATTTCTTTGTAGTTGGCAGGGGACAAGGGAATTTCAACCGCAAAAAGGATACCAAAAAATTCAATC TTGTAGATCCTGTGGAAAGAAACACAGTTGGTGTACCAGCTGGGGGGTGGACCGCTATCAGATTCAGAGCAGATAATCCA GGGGTGTGGTTTATGCACTGCCATTTGGAGATTCATACAACATGGGGACTGAAGATGGCATTTGTGGTGGACAATGGTAA AGGACCAAATGAATCTATATTACCACCTCCAAGGGACCTTCCCAAGTGCTGA
Protein sequence (LotjaGi6g1v0132300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNATRLCSTKPIVTVNGKFPGPTIYAREDDTVLIKVVNHVKYNVSIHWHGVRQLRTGWADGPAFITQCPIQPGQVYLYN FTLTGQRGTLWWHAHILWLRATVHGAIVILPKLGVPYPFPKPHMEQVILLSEWWKSDTEAVINEALKSGLAPNVSDAHTI NGHPGSVQGCTSQGGFTLDVQPGNTYLLRIINAALNEELFFKIAGHQLTVVEVDAAYTKPFKTDTVVIAPGQTTNVLLTA THATGKYLVAASPFMDAPITVDNRTATAALHYSGTLGSTITTLTTLPPTNATPVATTFTDSLRSLNSKSFPARVPLKIDH NLLFTVGLGIKPCAICVNNSRVVADINNVTFVMPKIALLQAHFFKIKGVFTDDFPANPPVVYNFTGTQPTNFNTMNGTRL YRLAYNSTVQLVLQDTGMLTPENHPIHLHGFNFFVVGRGQGNFNRKKDTKKFNLVDPVERNTVGVPAGGWTAIRFRADNP GVWFMHCHLEIHTTWGLKMAFVVDNGKGPNESILPPPRDLPKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 523 | 523 | 0.0 | – | |
| PANTHER | 1 | 523 | 523 | 0.0 | – | |
| CDD | 1 | 111 | 111 | 4.59261E-71 | ||
| TIGRFAM | 1 | 523 | 523 | 3.3E-272 | ||
| Pfam | 2 | 112 | 111 | 2.7E-41 | ||
| Gene3D | 2 | 111 | 110 | 2.2E-33 | ||
| SUPERFAMILY | 4 | 140 | 137 | 3.26E-38 | ||
| SUPERFAMILY | 119 | 289 | 171 | 1.11E-42 | ||
| Gene3D | 123 | 307 | 185 | 3.5E-41 | ||
| Pfam | 126 | 274 | 149 | 1.5E-43 | ||
| CDD | 126 | 272 | 147 | 3.68312E-80 | ||
| SUPERFAMILY | 315 | 523 | 209 | 1.08E-47 | ||
| Gene3D | 334 | 523 | 190 | 1.2E-59 | ||
| CDD | 369 | 506 | 138 | 1.6354E-83 | ||
| Pfam | 374 | 506 | 133 | 2.5E-42 | ||
| ProSitePatterns | 481 | 501 | 21 | - | ||
| ProSitePatterns | 486 | 497 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Lignin catabolic process | The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. | ||
| Cellular component | Apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. | ||
| Molecular function | Hydroquinone:oxygen oxidoreductase activity | Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0132300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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