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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0462700 |
| Transcript ID | LotjaGi4g1v0462700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Laccase; TAIR: AT1G18140.1 laccase 1; Swiss-Prot: sp|Q9LMS3|LAC1_ARATH Laccase-1; TrEMBL-Plants: tr|M5WFA5|M5WFA5_PRUPE Laccase; Found in the gene: LotjaGi4g1v0462700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83303884..83307986) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAATTGTATATAAAGGTGTCTATTCATTTAAGTTTGGTAAGTTGTCACACTAGTTACATATTTGAGTGACTCAACTT GTAAAGCCAGCATTGAGTATGAAGGGTCTAAAGCAGCATTATAGGTTGTTACTGGTAACACTATTGATTGCAGCAAGCTT ACTATCCTGTTTGGCCACAACAACCACTAAAACCTTTCAGTTTAATGTGAGATTCCTTTACATCGAACTTTTATTAATTT TCTACGCCGATCTACCTTCTACATCGGATCACTCATCATGTATATATCTCTCATGATGTCAGGTGGAGTGGAAGAAGGTG ACTCGATTGTGCCACACCAAGCCCTTGTTAACAGTGAATGGGGAGTATCCGGGGCCAACCATTGCTATCCATGAAGGTGA CAATGTTGAAGTTAAGGTGACCAATCACATTGCTCAGAACACTACTCTTCACTGGTAAGTGAAGCTTTCCAATACTGAAA GTATCATCACTAGCATAGTAACATGCTTATATTTAAAAATGAATATGCAAGCAAGGTGTAATCCAATTCCAATGTATCCA CTAATTATGAAATTTGAGTTTACAATTATGGACTATGGTTTTACTTTTACAGGCATGGAGTAAAGCAACTAAGAACAGGA TGGGCAGATGGTCCAGCATACATCACACAATGTCCTATTAAGGGAGGGCATTCCTATACTTACAAGTTCAGGGTGATCAA CCAAAGAGGAACCCTTTTATGGCATGCACATTATTCTTGGCAAAGAGCTTCAGTATATGGTGCCTTTATAATTTACCCCC GCATACCTTACCCCTTCTCTGCTCCAGTTGATGCTGAGATCCCCATTATTTTAGGTAACTTTCTATTTCTTCCATCACGA ATTAATTATCTCAATAGCTTAAGCTGATTCACAGACCCACTTACCTTCTGAAATTAAACTTTATTAGAATAATGAGGGCA ATAATGATCGAACAGTAGAACACCTTGTCATAAAACTGCAATATCATATCATGAACCAACTACCCTGATAGCTTAAGCTA TTGGATGAACACACAAATGCTTCTGTGTTATATTTCTTATACCTTCTAGTGTTTCAAAGTTCAGATAAACATTCCATGTT TAGAGTATGTTCTTAACAGATATCAATTGAAGTTATTGGGTTGGTGATGATGGCAATGTATCTCTTCTTTGTTTCTCCAC CTCATTCAAATCTAAGTATGTTCTTTGACAACAGGTGAATGGTGGAATTCAGATGTGGAAAAAATGCAGAGTGAGATGAT GAAGTATGGAGGTGGACCAAATAGTTCTGATGCTTACACCATAAATGGTTTGCCCGGACCTCTTAATCCTTGTTCAAACA AAGGTTTGGCCATTTTTCAACAAATTTCCCCAGCTTTAAGGGAATCAAAACAATTTAGAGAAAAGAAGATTAATCATTTC AAAATGGTACATGCATAAAATATTTCTAGTATGACTCAATGAACTAGGCAAAGCCAAAGAATTTGTGTCTCTTGTGTTCA GGGAATTCCTGAGCCCACTCACTTAAGGAATCTTGGTCATTCGATCAAGATTGAACAGCTTGAATTTTAAGTTCATCTTT GTCGTCAAGTCTCAATGAAATATGAGTCAACCGATCTTGATCGAACAATTCAAATTTTTGGAATGTAGAATTGCCCTGAC TGCATGTAACCGGAATCCATAGCGAACCCATGGCTACAGTCTTACAGTTTTTTCATTTTCTTTTTCAACTGTGTGCAGAT ACTTTCATCTACACTGTGGAAAGTGGTAAAACCTACTTGCTTAGAATCATCAATGCAGCTCTCAGTGACGAGCTCTACTT TGGCGTTGCTAACCATACCTTAACTGTTGTTGAGGTTGATGCATCATACACAAAACCATTTAACACAAGAGCAATCATGG TCACTCCTGGCCAGACCACCAATGTGCTGCTCAGAGCAAATCAAATTCCTGATTCTTCAGGCTTGTTTGTTATGGCAGCT AGGCCTTACCGCACATCGGTTTTTCCATTTGACAATTCCACCACAATTGGATATTTGAGGTATAACAGCACAAGAGGTGA GAAAGTCAAACCTCCTCATGTTCCTACTGATCTTTCTATTCACAACCTTCCTGAGATGGAAGATACAAAGTTTGAAACAG AATTCTCTGCTAAACTCAGAAGCATAGCAACTTCTCAATTTCCATGTAAGGTACCTAAGAAGATTGACAAGCGAGTTATA ACAACTATAAGCCTTAACCTTCAGGATTGTCCCGCAAACAGGACCTGCAAAGGATATAATGGGAAGAGATATTTTGCTTC AATGAATAACCAGTCCTTTGTTAGGCCTTCCATTTCAGTATTAGACTCTTACTATAGGAACCTCAAACCCCATGGATACT CTCTTGATTTCCCAGAGAGGCCTCCAAAATCTTTTGACTACAGTGGTGTGGACCCAGTAACAGAAAACATGAACACAGAA TTTGGCACAAGACTTTTAGCATTGCCTCATGGCACAAACTTGGAGATAGTGTTTCAGGACACTGGTTTCCTTAATGTGGA GAACCATCCAATTCACGTTCATGGTCACAACTTCTTCATTGTAGGCATGGGGTTGGGTAACTACAATGTTAGCAATGACC CAGCAAATTATAATCTTGTTGATCCTCCAGAGAGAAATACAGTGGGAGTTCCAAAGGGTGGATGGGCTGCAATTAGGCTT AAGGCAGATAATCCAGGAGTGTGGTTTATACACTGCCATCTTGAGGAGCACACATCTTGGGGTCTTGCCATGGCTTTCAT TGTGAAAGATGGTTCTGCAGCATCTGAATGCTTGCTTCCTCCCCCTGAAGATTTTCCTTCCTGTTGAGTCTCCTTCTGCC AAATTTTGGGAAGTGCTAAATTTTAAATTGAACGAGATATGTATTTGAATAATGACTATTATTGATTATGAAGGAAACTT GTGTTGGTCATAATGGAGTATAAAATACTTTACTGTCATAAATCATGACCATAGATATGTATCAGAGTATGTATATGTGT TCCCAAATCTTTGCAACCTATATATGTTTGGATATCTGTTGACACCAAGGCAAACGAACATTAGCACTTATTCTGAGACA AAATGTAAACATAAATTTTCCCATTGCACTCACAACTGGTATCTAAACACACTAAATCAACTTAGACACCCCTTCCCCCA CTCCAAAAAAGAAAAGAAACTTTAACATAAAAGAAAAAGAAGCATGTCCATAGACTAGTACTAGCTATTACAATACCTTG ATCCAATATACAAAAATGTTTCTCTTTTGTGTTGAATATGCAGTAAAGGGGTTCACATGACAAAACCACTTACTGGTTAT TGAAATGAAAAAAATCATAATGAGAAAGAGCCAGGCCTTTTCTTTTGCTTTGCTACCATTAGTTTCCTGAGCAGCTTTAG ACTGCAAAGCGTGCAATTCCTCCAACAGCTCGGAGCTCAAAACCTACTATAGAGAGAATAAAATTATAATAATATTTTTT TTTAACTCAAATCATTGATTAATGGGGTTGGCATGGAGAATTGGAGATCCTTACAAAATGAGGGTTTTGCAGCACATGCC ATGGTGTACACATTCTAGCCCACAAAGCTTACATCATTAGGATTTAGGAAGCTGAATCCAGTAACAGGCACCCCTTTATA GTTTATACGGCTGAAAGATTCTTCTCCTTCTCTCTTTTGCTTTTTACCAAATTAACTGAGTCTAATTTGACAAGCAACAA TAGAAAGTCACAGACTCACAGTATCATACTAACACTTTTTTTTTGACAGACTAATGCATGAAAAATTGATAATTCAAACA AAAAACCAAAAAAGATAAAGCTAGATTACTAATTTATATTTCTACAAGGACTTAAGGAATTATAAAGTGGATTAAAGGAA GAAAGTAACAGAACAAAAAACGAACAAAAAGTTCAAGGCAAAGGCCATCATGAATTATTAGATAGATAAAGATCTAAGGG CAACAGCTGGCTGGGGTTAGGGATAGATATTATAGTCTATTTGGAACAATGATGACACAGAATTCCAGGTAGGCAGAAGC TATGAGAGGAAATTCAAGCTAGA
CDS sequence (LotjaGi4g1v0462700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGTCTAAAGCAGCATTATAGGTTGTTACTGGTAACACTATTGATTGCAGCAAGCTTACTATCCTGTTTGGCCAC AACAACCACTAAAACCTTTCAGTTTAATGTGGAGTGGAAGAAGGTGACTCGATTGTGCCACACCAAGCCCTTGTTAACAG TGAATGGGGAGTATCCGGGGCCAACCATTGCTATCCATGAAGGTGACAATGTTGAAGTTAAGGTGACCAATCACATTGCT CAGAACACTACTCTTCACTGGCATGGAGTAAAGCAACTAAGAACAGGATGGGCAGATGGTCCAGCATACATCACACAATG TCCTATTAAGGGAGGGCATTCCTATACTTACAAGTTCAGGGTGATCAACCAAAGAGGAACCCTTTTATGGCATGCACATT ATTCTTGGCAAAGAGCTTCAGTATATGGTGCCTTTATAATTTACCCCCGCATACCTTACCCCTTCTCTGCTCCAGTTGAT GCTGAGATCCCCATTATTTTAGGTGAATGGTGGAATTCAGATGTGGAAAAAATGCAGAGTGAGATGATGAAGTATGGAGG TGGACCAAATAGTTCTGATGCTTACACCATAAATGGTTTGCCCGGACCTCTTAATCCTTGTTCAAACAAAGATACTTTCA TCTACACTGTGGAAAGTGGTAAAACCTACTTGCTTAGAATCATCAATGCAGCTCTCAGTGACGAGCTCTACTTTGGCGTT GCTAACCATACCTTAACTGTTGTTGAGGTTGATGCATCATACACAAAACCATTTAACACAAGAGCAATCATGGTCACTCC TGGCCAGACCACCAATGTGCTGCTCAGAGCAAATCAAATTCCTGATTCTTCAGGCTTGTTTGTTATGGCAGCTAGGCCTT ACCGCACATCGGTTTTTCCATTTGACAATTCCACCACAATTGGATATTTGAGGTATAACAGCACAAGAGGTGAGAAAGTC AAACCTCCTCATGTTCCTACTGATCTTTCTATTCACAACCTTCCTGAGATGGAAGATACAAAGTTTGAAACAGAATTCTC TGCTAAACTCAGAAGCATAGCAACTTCTCAATTTCCATGTAAGGTACCTAAGAAGATTGACAAGCGAGTTATAACAACTA TAAGCCTTAACCTTCAGGATTGTCCCGCAAACAGGACCTGCAAAGGATATAATGGGAAGAGATATTTTGCTTCAATGAAT AACCAGTCCTTTGTTAGGCCTTCCATTTCAGTATTAGACTCTTACTATAGGAACCTCAAACCCCATGGATACTCTCTTGA TTTCCCAGAGAGGCCTCCAAAATCTTTTGACTACAGTGGTGTGGACCCAGTAACAGAAAACATGAACACAGAATTTGGCA CAAGACTTTTAGCATTGCCTCATGGCACAAACTTGGAGATAGTGTTTCAGGACACTGGTTTCCTTAATGTGGAGAACCAT CCAATTCACGTTCATGGTCACAACTTCTTCATTGTAGGCATGGGGTTGGGTAACTACAATGTTAGCAATGACCCAGCAAA TTATAATCTTGTTGATCCTCCAGAGAGAAATACAGTGGGAGTTCCAAAGGGTGGATGGGCTGCAATTAGGCTTAAGGCAG ATAATCCAGGAGTGTGGTTTATACACTGCCATCTTGAGGAGCACACATCTTGGGGTCTTGCCATGGCTTTCATTGTGAAA GATGGTTCTGCAGCATCTGAATGCTTGCTTCCTCCCCCTGAAGATTTTCCTTCCTGTTGA
Protein sequence (LotjaGi4g1v0462700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGLKQHYRLLLVTLLIAASLLSCLATTTTKTFQFNVEWKKVTRLCHTKPLLTVNGEYPGPTIAIHEGDNVEVKVTNHIA QNTTLHWHGVKQLRTGWADGPAYITQCPIKGGHSYTYKFRVINQRGTLLWHAHYSWQRASVYGAFIIYPRIPYPFSAPVD AEIPIILGEWWNSDVEKMQSEMMKYGGGPNSSDAYTINGLPGPLNPCSNKDTFIYTVESGKTYLLRIINAALSDELYFGV ANHTLTVVEVDASYTKPFNTRAIMVTPGQTTNVLLRANQIPDSSGLFVMAARPYRTSVFPFDNSTTIGYLRYNSTRGEKV KPPHVPTDLSIHNLPEMEDTKFETEFSAKLRSIATSQFPCKVPKKIDKRVITTISLNLQDCPANRTCKGYNGKRYFASMN NQSFVRPSISVLDSYYRNLKPHGYSLDFPERPPKSFDYSGVDPVTENMNTEFGTRLLALPHGTNLEIVFQDTGFLNVENH PIHVHGHNFFIVGMGLGNYNVSNDPANYNLVDPPERNTVGVPKGGWAAIRLKADNPGVWFIHCHLEEHTSWGLAMAFIVK DGSAASECLLPPPEDFPSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| ProSiteProfiles | 1 | 24 | 24 | 6.0 | – | |
| PANTHER | 6 | 579 | 574 | 0.0 | – | |
| PANTHER | 6 | 579 | 574 | 0.0 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Gene3D | 9 | 149 | 141 | 2.8E-38 | ||
| Phobius | 10 | 22 | 13 | - | – | |
| Phobius | 23 | 26 | 4 | - | – | |
| SUPERFAMILY | 26 | 172 | 147 | 8.96E-36 | ||
| Phobius | 27 | 579 | 553 | - | – | |
| TIGRFAM | 29 | 579 | 551 | 3.2E-236 | ||
| CDD | 33 | 149 | 117 | 5.06877E-67 | ||
| Pfam | 37 | 150 | 114 | 6.0E-42 | ||
| SUPERFAMILY | 158 | 330 | 173 | 1.03E-37 | ||
| Gene3D | 159 | 356 | 198 | 8.5E-39 | ||
| Pfam | 163 | 314 | 152 | 6.0E-37 | ||
| CDD | 163 | 312 | 150 | 6.55849E-83 | ||
| SUPERFAMILY | 363 | 579 | 217 | 6.81E-42 | ||
| Gene3D | 383 | 579 | 197 | 7.4E-55 | ||
| CDD | 424 | 562 | 139 | 2.78101E-82 | ||
| Pfam | 428 | 562 | 135 | 3.7E-40 | ||
| ProSitePatterns | 537 | 557 | 21 | - | ||
| ProSitePatterns | 542 | 553 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Lignin catabolic process | The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. | ||
| Cellular component | Apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. | ||
| Molecular function | Hydroquinone:oxygen oxidoreductase activity | Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0462700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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