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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011598
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 386 results. Now displaying 3 of 8 with 50 rows per page. This search has taken 5.880s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v2771140.1
n.a. PREDICTED: transcription factor bHLH51 [Glycine max] gi|356551418|ref|XP_003544072.1| chr2 36617077 36618725 +
6 domain predictions
1 GO term
Lj2g3v2843590.1
n.a. Transcription factor bHLH93 [Medicago truncatula] gi|357492909|ref|XP_003616743.1| chr2 37111389 37113822 +
2 domain predictions
1 GO term
Lj3g3v0028570.1
n.a. PREDICTED: transcription factor bHLH25-like [Glycine max] gi|356522308|ref|XP_003529789.1| chr3 377641 381831 +
6 domain predictions
1 GO term
Lj3g3v0028580.1
n.a. Transcription factor bHLH18 [Medicago truncatula] gi|357455383|ref|XP_003597972.1| chr3 383590 388396 -
6 domain predictions
1 GO term
Lj3g3v0030630.1
n.a. BHLH transcription factor [Medicago truncatula] gi|357455385|ref|XP_003597973.1| chr3 416244 419561 -
6 domain predictions
1 GO term
Lj3g3v0290430.1
n.a. PREDICTED: transcription factor bHLH87-like [Glycine max] gi|356528881|ref|XP_003533026.1| chr3 2008327 2009042 -
6 domain predictions
1 GO term
Lj3g3v0423730.1
n.a. PREDICTED: transcription factor BEE 3-like [Glycine max] gi|356529573|ref|XP_003533364.1| chr3 3694195 3696008 -
6 domain predictions
1 GO term
Lj3g3v0478050.1
n.a. PREDICTED: transcription factor bHLH130-like [Glycine max] gi|356548947|ref|XP_003542860.1| chr3 5469965 5475915 -
6 domain predictions
1 GO term
Lj3g3v0741510.1
n.a. PREDICTED: transcription factor bHLH62-like [Glycine max] gi|356566230|ref|XP_003551337.1| chr3 8483730 8488383 -
4 domain predictions
1 GO term
Lj3g3v0741510.2
n.a. PREDICTED: transcription factor bHLH62-like [Glycine max] gi|356558973|ref|XP_003547776.1| chr3 8483957 8487503 -
6 domain predictions
1 GO term
Lj3g3v0870610.1
n.a. PREDICTED: transcription factor bHLH130-like [Glycine max] gi|356525636|ref|XP_003531430.1| chr3 10699669 10702167 +
6 domain predictions
1 GO term
Lj3g3v1113460.1
n.a. PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like [Cicer arietinum] gi|502083782|ref|XP_004487563.1| chr3 14991300 14993200 +
6 domain predictions
1 GO term
Lj3g3v1262250.1
n.a. PREDICTED: transcription factor LHW-like [Cicer arietinum] gi|502145882|ref|XP_004506222.1| chr3 16327999 16331695 -
2 domain predictions
1 GO term
Lj3g3v1341620.1
n.a. PREDICTED: transcription factor bHLH115-like [Glycine max] gi|356549994|ref|XP_003543375.1| chr3 17399336 17401916 +
6 domain predictions
1 GO term
Lj3g3v1404080.1
n.a. Transcription factor bHLH61 isoform 1 [Theobroma cacao] gi|508710735|gb|EOY02632.1| chr3 18000289 18002321 +
3 domain predictions
1 GO term
Lj3g3v1545570.1
n.a. Transcription factor ILR3 [Medicago truncatula] gi|357452673|ref|XP_003596613.1| chr3 19825989 19828239 -
6 domain predictions
1 GO term
Lj3g3v1663540.1
n.a. PREDICTED: transcription factor bHLH30-like [Glycine max] gi|356543028|ref|XP_003539965.1| chr3 21314862 21316909 -
6 domain predictions
1 GO term
Lj3g3v1717780.1
n.a. PREDICTED: transcription factor bHLH122-like [Glycine max] gi|356557515|ref|XP_003547061.1| chr3 21693706 21696839 +
6 domain predictions
1 GO term
Lj3g3v1820800.3
n.a. PREDICTED: transcription factor SPATULA-like isoform X1 [Cicer arietinum] gi|502125746|ref|XP_004499048.1| chr3 23129130 23131788 -
5 domain predictions
1 GO term
Lj3g3v2517670.1
n.a. PREDICTED: transcription factor bHLH70-like [Glycine max] gi|356520219|ref|XP_003528761.1| chr3 30859937 30862711 +
6 domain predictions
1 GO term
Lj3g3v2720020.1
n.a. PREDICTED: transcription factor bHLH87-like [Glycine max] gi|356522216|ref|XP_003529743.1| chr3 33301068 33303104 +
6 domain predictions
1 GO term
Lj3g3v2848980.1
n.a. PREDICTED: transcription factor bHLH30-like [Glycine max] gi|356543028|ref|XP_003539965.1| chr3 35138805 35140631 -
6 domain predictions
1 GO term
Lj3g3v2948510.1
n.a. PREDICTED: transcription factor LHW-like [Cicer arietinum] gi|502145882|ref|XP_004506222.1| chr3 36678618 36686587 +
2 domain predictions
1 GO term
Lj3g3v3033250.2
n.a. PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like [Cicer arietinum] gi|502145555|ref|XP_004506077.1| chr3 37976582 37984809 -
6 domain predictions
1 GO term
Lj3g3v3248370.1
n.a. PREDICTED: transcription factor bHLH122-like [Glycine max] gi|356544541|ref|XP_003540708.1| chr3 40114990 40116751 +
6 domain predictions
1 GO term
Lj3g3v3248370.2
n.a. n.a. chr3 40114994 40116751 +
6 domain predictions
1 GO term
Lj3g3v3360870.1
n.a. PREDICTED: transcription factor bHLH49-like [Glycine max] gi|356538777|ref|XP_003537877.1| chr3 41229418 41233026 +
6 domain predictions
1 GO term
Lj3g3v3530640.1
n.a. PREDICTED: transcription factor bHLH121-like [Glycine max] gi|356525604|ref|XP_003531414.1| chr3 43195854 43199161 +
6 domain predictions
1 GO term
Lj3g3v3754390.1
n.a. PREDICTED: transcription factor bHLH80-like [Cucumis sativus] gi|449447621|ref|XP_004141566.1| chr3 45498178 45499498 +
4 domain predictions
1 GO term
Lj3g3v3754390.2
n.a. PREDICTED: transcription factor bHLH80-like [Cucumis sativus] gi|449447621|ref|XP_004141566.1| chr3 45498178 45501346 +
6 domain predictions
1 GO term
Lj4g3v0147800.1
n.a. PREDICTED: transcription factor bHLH137-like [Glycine max] gi|356507384|ref|XP_003522447.1| chr4 1511079 1513719 -
6 domain predictions
1 GO term
Lj4g3v0189910.1
n.a. PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH91-like [Glycine max] gi|356510818|ref|XP_003524131.1| chr4 2406028 2409483 +
4 domain predictions
1 GO term
Lj4g3v0423240.1
n.a. PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Glycine max] gi|356557627|ref|XP_003547117.1| chr4 5692284 5693573 +
4 domain predictions
1 GO term
Lj4g3v0451060.1
n.a. PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH91-like [Glycine max] gi|356510818|ref|XP_003524131.1| chr4 6574528 6577148 -
6 domain predictions
1 GO term
Lj4g3v0506920.1
n.a. PREDICTED: transcription factor bHLH30-like [Cicer arietinum] gi|502142878|ref|XP_004505138.1| chr4 8491722 8495638 -
6 domain predictions
1 GO term
Lj4g3v0513460.2
n.a. PREDICTED: transcription factor bHLH113-like [Glycine max] gi|356521467|ref|XP_003529377.1| chr4 8792770 8797930 -
4 domain predictions
1 GO term
Lj4g3v0620080.1
n.a. Transcription factor bHLH95 [Medicago truncatula] gi|357475297|ref|XP_003607934.1| chr4 9456286 9458897 -
6 domain predictions
1 GO term
Lj4g3v0620100.1
n.a. Transcription factor bHLH95 [Medicago truncatula] gi|357475297|ref|XP_003607934.1| chr4 9471324 9473594 -
6 domain predictions
1 GO term
Lj4g3v0620150.1
n.a. Transcription factor bHLH95 [Medicago truncatula] gi|357475297|ref|XP_003607934.1| chr4 9499662 9501201 +
3 domain predictions
1 GO term
Lj4g3v0654660.1
n.a. PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH91-like [Glycine max] gi|356510818|ref|XP_003524131.1| chr4 10687535 10688840 -
6 domain predictions
1 GO term
Lj4g3v1598230.1
n.a. PREDICTED: transcription factor bHLH79-like [Glycine max] gi|356562791|ref|XP_003549652.1| chr4 23495843 23499820 -
6 domain predictions
1 GO term
Lj4g3v2882120.1
n.a. BHLH transcription factor [Medicago truncatula] gi|357520555|ref|XP_003630566.1| chr4 38542091 38545524 +
6 domain predictions
1 GO term
Lj4g3v2963430.1
n.a. bHLH transcription factor [Lotus japonicus] gi|300117045|dbj|BAJ10680.1| chr4 39196840 39201168 +
6 domain predictions
1 GO term
Lj5g3v0308790.1
n.a. PREDICTED: transcription factor bHLH85-like [Cicer arietinum] gi|502125638|ref|XP_004499006.1| chr5 2953233 2955219 +
6 domain predictions
1 GO term
Lj5g3v0335560.1
n.a. PREDICTED: transcription factor bHLH74-like [Glycine max] gi|356552284|ref|XP_003544498.1| chr5 3337028 3341131 +
6 domain predictions
1 GO term
Lj5g3v0962700.1
n.a. n.a. chr5 14716479 14725360 -
5 domain predictions
1 GO term
Lj5g3v0975580.1
n.a. bHLH transcription factor LjTT8 [Lotus japonicus] gi|224994136|dbj|BAH28881.1| chr5 15026586 15027819 +
3 domain predictions
1 GO term
Lj5g3v1237810.1
n.a. PREDICTED: transcription factor LHW-like [Cicer arietinum] gi|502116579|ref|XP_004495499.1| chr5 20026369 20029334 +
3 domain predictions
1 GO term
Lj5g3v1351980.1
n.a. PREDICTED: transcription factor bHLH36-like [Glycine max] gi|356544962|ref|XP_003540915.1| chr5 20599702 20600558 +
3 domain predictions
1 GO term
Lj5g3v1412970.2
n.a. PREDICTED: transcription factor UNE12-like [Cicer arietinum] gi|502117932|ref|XP_004496017.1| chr5 20965883 20970578 -
6 domain predictions
1 GO term