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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011989
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 891 results. Now displaying 2 of 18 with 50 rows per page. This search has taken 5.980s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0253809.1
n.a. expressed protein [Arabidopsis lyrata subsp]. lyrata] gi|297823899|ref|XP_002879832.1| chr0 131688230 131696644 -
2 domain predictions
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Lj0g3v0254439.1
n.a. Pumilio-like protein [Medicago truncatula] gi|357454231|ref|XP_003597396.1| chr0 132104364 132107457 +
2 domain predictions
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Lj0g3v0257529.3
n.a. MMS19 nucleotide excision repair protein-like protein [Medicago truncatula] gi|357454787|ref|XP_003597674.1| chr0 133688127 133692681 -
2 domain predictions
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Lj0g3v0257549.2
n.a. MMS19 nucleotide excision repair protein-like protein [Medicago truncatula] gi|357454787|ref|XP_003597674.1| chr0 133693946 133699098 -
2 domain predictions
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Lj0g3v0258489.1
n.a. PREDICTED: proline-, glutamic acid- and leucine-rich protein 1-like [Cicer arietinum] gi|502157030|ref|XP_004510734.1| chr0 134197513 134201382 -
2 domain predictions
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Lj0g3v0261839.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357456825|ref|XP_003598693.1| chr0 135686544 135690720 -
2 domain predictions
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Lj0g3v0267019.1
n.a. PREDICTED: U-box domain-containing protein 20-like [Glycine max] gi|356553261|ref|XP_003544976.1| chr0 138369527 138371748 +
2 domain predictions
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Lj0g3v0274039.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357438777|ref|XP_003589665.1| chr0 142049615 142057959 -
2 domain predictions
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Lj0g3v0274039.2
n.a. U-box domain-containing protein [Medicago truncatula] gi|357438777|ref|XP_003589665.1| chr0 142049615 142055794 -
2 domain predictions
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Lj0g3v0274989.1
n.a. Importin subunit alpha-2 [Medicago truncatula] gi|357475937|ref|XP_003608254.1| chr0 142631409 142633639 -
2 domain predictions
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Lj0g3v0277039.1
n.a. PREDICTED: E3 ubiquitin-protein ligase listerin-like [Glycine max] gi|356499002|ref|XP_003518333.1| chr0 143758618 143769363 +
2 domain predictions
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Lj0g3v0279009.1
n.a. CLIP-associating protein [Medicago truncatula] gi|357510363|ref|XP_003625470.1| chr0 144785644 144800235 +
2 domain predictions
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Lj0g3v0279399.1
n.a. PREDICTED: serine/threonine-protein kinase TIO-like [Cicer arietinum] gi|502164656|ref|XP_004513201.1| chr0 144996003 145008991 -
2 domain predictions
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Lj0g3v0279399.2
n.a. PREDICTED: serine/threonine-protein kinase TIO-like [Cicer arietinum] gi|502164656|ref|XP_004513201.1| chr0 144996003 145009188 -
2 domain predictions
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Lj0g3v0279399.4
n.a. PREDICTED: serine/threonine-protein kinase TIO-like [Cicer arietinum] gi|502164656|ref|XP_004513201.1| chr0 144997974 145009188 -
2 domain predictions
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Lj0g3v0286609.1
n.a. PREDICTED: vacuolar protein 8-like [Glycine max] gi|356522654|ref|XP_003529961.1| chr0 148895010 148897537 -
2 domain predictions
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Lj0g3v0291179.1
n.a. PREDICTED: pumilio homolog 11-like [Cicer arietinum] gi|502117968|ref|XP_004496035.1| chr0 151160954 151162629 -
2 domain predictions
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Lj0g3v0300339.1
n.a. PREDICTED: U-box domain-containing protein 5-like [Cicer arietinum] gi|502153254|ref|XP_004509274.1| chr0 156045330 156052030 +
2 domain predictions
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Lj0g3v0301919.1
n.a. PREDICTED: protein FAM203A-like [Cicer arietinum] gi|502158595|ref|XP_004511210.1| chr0 156962541 156975445 -
2 domain predictions
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Lj0g3v0301919.2
n.a. PREDICTED: protein FAM203A-like [Cicer arietinum] gi|502158595|ref|XP_004511210.1| chr0 156969545 156975128 -
2 domain predictions
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Lj0g3v0303059.1
n.a. PREDICTED: probable importin-7 homolog isoform X3 [Cicer arietinum] gi|502102333|ref|XP_004492041.1| chr0 157743904 157749205 +
2 domain predictions
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Lj0g3v0304349.1
n.a. DDB1-CUL4 associated factor 1 [Theobroma cacao] gi|508781842|gb|EOY29098.1| chr0 158518702 158520161 +
2 domain predictions
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Lj0g3v0308049.1
n.a. Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform [Medicago truncatula] gi|357463117|ref|XP_003601840.1| chr0 160818314 160823377 +
2 domain predictions
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Lj0g3v0313709.1
n.a. PREDICTED: probable importin-7 homolog [Glycine max] gi|356526625|ref|XP_003531917.1| chr0 163771913 163774421 -
2 domain predictions
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Lj0g3v0313719.2
n.a. PREDICTED: probable importin-7 homolog isoform X1 [Cicer arietinum] gi|502102327|ref|XP_004492039.1| chr0 163772308 163775152 -
2 domain predictions
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Lj0g3v0313719.3
n.a. PREDICTED: probable importin-7 homolog [Glycine max] gi|356526625|ref|XP_003531917.1| chr0 163772308 163775182 -
2 domain predictions
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Lj0g3v0319829.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr0 166940659 166941852 -
2 domain predictions
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Lj0g3v0323439.1
n.a. PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max] gi|356532415|ref|XP_003534768.1| chr0 168896575 168900845 -
2 domain predictions
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Lj0g3v0323739.1
n.a. PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Glycine max] gi|356568286|ref|XP_003552344.1| chr0 169055808 169058625 -
2 domain predictions
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Lj0g3v0325339.2
n.a. armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|334186061|ref|NP_191316.5| chr0 170006652 170016463 +
2 domain predictions
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Lj0g3v0326939.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 170898222 170899504 +
2 domain predictions
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Lj0g3v0327189.1
n.a. PREDICTED: U3 small nucleolar RNA-associated protein 20-like [Glycine max] gi|356569238|ref|XP_003552811.1| chr0 171041987 171053687 -
2 domain predictions
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Lj0g3v0327189.2
n.a. PREDICTED: small subunit processome component 20 homolog [Cicer arietinum] gi|502105173|ref|XP_004492742.1| chr0 171041987 171063155 -
2 domain predictions
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Lj0g3v0327189.3
n.a. PREDICTED: small subunit processome component 20 homolog [Cicer arietinum] gi|502105173|ref|XP_004492742.1| chr0 171041987 171063155 -
2 domain predictions
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Lj0g3v0328059.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr0 171480275 171480709 +
2 domain predictions
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Lj0g3v0331289.1
n.a. PREDICTED: U-box domain-containing protein 8-like [Cicer arietinum] gi|502142430|ref|XP_004504954.1| chr0 173140640 173142964 +
2 domain predictions
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Lj0g3v0332899.1
n.a. PREDICTED: cell differentiation protein RCD1 homolog [Cicer arietinum] gi|502174062|ref|XP_004515427.1| chr0 174198416 174204021 -
2 domain predictions
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Lj0g3v0343689.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180194569 180204934 -
2 domain predictions
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Lj0g3v0343689.2
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180197934 180204934 -
2 domain predictions
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Lj0g3v0343689.3
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180200209 180204251 -
2 domain predictions
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Lj0g3v0344299.1
n.a. PREDICTED: calcium-binding protein 39-like [Cicer arietinum] gi|502078924|ref|XP_004486097.1| chr0 180562394 180565696 -
2 domain predictions
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Lj0g3v0345269.1
n.a. PREDICTED: condensin complex subunit 1-like [Cicer arietinum] gi|502169956|ref|XP_004514724.1| chr0 181140876 181150618 +
2 domain predictions
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Lj0g3v0349869.1
n.a. PREDICTED: armadillo repeat-containing protein 6-like [Cicer arietinum] gi|502123564|ref|XP_004498168.1| chr0 183787626 183792645 -
2 domain predictions
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Lj0g3v0354239.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Glycine max] gi|356569539|ref|XP_003552957.1| chr0 186547902 186551887 -
2 domain predictions
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Lj0g3v0358599.1
n.a. PREDICTED: transportin-3-like isoform 2 [Glycine max] gi|356562789|ref|XP_003549651.1| chr0 188783180 188791285 -
2 domain predictions
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Lj0g3v0358929.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A-like [Cicer arietinum] gi|502143997|ref|XP_004505542.1| chr0 188956016 188963005 -
2 domain predictions
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Lj0g3v0359049.1
n.a. PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cicer arietinum] gi|502093420|ref|XP_004489938.1| chr0 189016041 189019883 -
2 domain predictions
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Lj0g3v0359289.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Glycine max] gi|356543678|ref|XP_003540287.1| chr0 189153109 189154877 +
2 domain predictions
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Lj0g3v0363829.1
n.a. ARM repeat superfamily protein [Theobroma cacao] gi|508725730|gb|EOY17627.1| chr0 191979751 191983250 +
2 domain predictions
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Lj0g3v0363829.3
n.a. ARM repeat superfamily protein [Theobroma cacao] gi|508725730|gb|EOY17627.1| chr0 191979785 191983250 +
2 domain predictions
 –