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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013320
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 826 results. Now displaying 8 of 17 with 50 rows per page. This search has taken 5.751s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1560730.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cicer arietinum] gi|502162249|ref|XP_004512441.1| chr2 24836475 24839335 +
2 domain predictions
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Lj2g3v1573030.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase S.5-like [Cicer arietinum] gi|502161839|ref|XP_004512301.1| chr2 25004192 25008111 -
3 domain predictions
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Lj2g3v1644310.1
n.a. PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic-like [Cicer arietinum] gi|502161717|ref|XP_004512261.1| chr2 25498300 25502562 +
2 domain predictions
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Lj2g3v1707560.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Cicer arietinum] gi|502161315|ref|XP_004512119.1| chr2 26400868 26405408 -
2 domain predictions
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Lj2g3v1828320.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490598|dbj|BAI79286.1| chr2 27394729 27397178 +
2 domain predictions
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Lj2g3v1828820.1
n.a. PREDICTED: wall-associated receptor kinase-like 14-like [Cicer arietinum] gi|502161020|ref|XP_004511986.1| chr2 27605415 27609971 -
2 domain predictions
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Lj2g3v1902230.1
n.a. PREDICTED: probable receptor-like protein kinase At5g24010-like [Glycine max] gi|356575998|ref|XP_003556122.1| chr2 28215800 28218259 -
2 domain predictions
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Lj2g3v1984060.1
n.a. PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 6-like [Glycine max] gi|356497025|ref|XP_003517365.1| chr2 28926379 28927924 -
3 domain predictions
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Lj2g3v1984370.1
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1-like [Cicer arietinum] gi|502160581|ref|XP_004511796.1| chr2 29015057 29019497 -
2 domain predictions
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Lj2g3v1988810.1
n.a. NAK-type protein kinase [Medicago truncatula] gi|357482241|ref|XP_003611406.1| chr2 29593959 29596872 -
2 domain predictions
 –
Lj2g3v1989170.1
n.a. Kinase-like protein [Medicago truncatula] gi|357482147|ref|XP_003611359.1| chr2 29778224 29780587 -
2 domain predictions
 –
Lj2g3v1989180.1
n.a. n.a. chr2 29783111 29786491 +
2 domain predictions
 –
Lj2g3v2017580.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430-like [Glycine max] gi|356497232|ref|XP_003517466.1| chr2 30907858 30911940 +
2 domain predictions
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Lj2g3v2017580.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430-like [Glycine max] gi|356497232|ref|XP_003517466.1| chr2 30908167 30911940 +
2 domain predictions
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Lj2g3v2173020.1
n.a. PREDICTED: probable inactive receptor kinase At5g58300-like [Glycine max] gi|356498894|ref|XP_003518282.1| chr2 32631709 32634679 -
2 domain predictions
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Lj2g3v2173040.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357490335|ref|XP_003615455.1| chr2 32641006 32644973 +
2 domain predictions
 –
Lj2g3v2173040.2
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357490335|ref|XP_003615455.1| chr2 32641050 32659544 +
2 domain predictions
 –
Lj2g3v2196570.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Glycine max] gi|356551830|ref|XP_003544276.1| chr2 32830957 32833849 -
3 domain predictions
 –
Lj2g3v2196580.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Glycine max] gi|356551830|ref|XP_003544276.1| chr2 32831163 32834338 -
3 domain predictions
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Lj2g3v2222900.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At4g00330-like [Glycine max] gi|356551844|ref|XP_003544283.1| chr2 32972361 32978963 -
2 domain predictions
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Lj2g3v2222900.3
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At4g00330-like [Glycine max] gi|356551844|ref|XP_003544283.1| chr2 32974927 32978963 -
2 domain predictions
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Lj2g3v2448220.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like isoform X1 [Cicer arietinum] gi|502129682|ref|XP_004500393.1| chr2 34598830 34608649 -
2 domain predictions
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Lj2g3v2533290.1
n.a. PREDICTED: L-type lectin-domain containing receptor kinase VIII.1-like [Glycine max] gi|356551991|ref|XP_003544355.1| chr2 34985321 34986306 -
3 domain predictions
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Lj2g3v2613030.1
n.a. PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Glycine max] gi|356569356|ref|XP_003552868.1| chr2 35593746 35596407 -
3 domain predictions
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Lj2g3v2661610.1
n.a. lectin-like receptor kinase 7;1 [Medicago truncatula] gi|38112425|gb|AAR11298.1| chr2 35921330 35922289 +
2 domain predictions
 –
Lj2g3v2661820.1
n.a. receptor-like protein kinase [Glycine max] gi|6650223|gb|AAF21775.1|AF068135_1 chr2 35952186 35953244 +
3 domain predictions
 –
Lj2g3v2736550.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357492663|ref|XP_003616620.1| chr2 36320849 36322678 +
2 domain predictions
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Lj2g3v2748710.1
n.a. Receptor kinase-like protein [Medicago truncatula] gi|357492697|ref|XP_003616637.1| chr2 36386488 36389156 -
2 domain predictions
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Lj2g3v2794510.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max] gi|356551399|ref|XP_003544063.1| chr2 36774910 36779183 -
2 domain predictions
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Lj2g3v2794510.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max] gi|356551399|ref|XP_003544063.1| chr2 36774910 36779278 -
2 domain predictions
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Lj2g3v2879660.1
n.a. DNA-directed RNA polymerase subunit beta [Medicago truncatula] gi|357493253|ref|XP_003616915.1| chr2 37548182 37548798 +
2 domain predictions
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Lj2g3v2899900.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490582|dbj|BAI79278.1| chr2 37615399 37618756 +
2 domain predictions
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Lj2g3v2899910.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490580|dbj|BAI79277.1| chr2 37622102 37624990 -
2 domain predictions
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Lj2g3v2899920.1
n.a. n.a. chr2 37623260 37625282 +
2 domain predictions
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Lj2g3v2925190.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase S.5-like [Cicer arietinum] gi|502161839|ref|XP_004512301.1| chr2 38164573 38167630 +
3 domain predictions
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Lj2g3v3121060.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650-like [Glycine max] gi|356501491|ref|XP_003519558.1| chr2 40299793 40311354 +
2 domain predictions
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Lj2g3v3302440.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Cicer arietinum] gi|502100211|ref|XP_004491661.1| chr2 41777545 41778321 +
2 domain predictions
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Lj2g3v3322880.1
n.a. PREDICTED: probable receptor-like protein kinase At1g67000-like isoform X1 [Cicer arietinum] gi|502124182|ref|XP_004498420.1| chr2 42143126 42144914 -
2 domain predictions
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Lj2g3v3361930.1
n.a. PREDICTED: probable serine/threonine-protein kinase At4g35230-like isoform X2 [Cicer arietinum] gi|502100099|ref|XP_004491635.1| chr2 42954222 42961953 +
2 domain predictions
 –
Lj3g3v0016510.1
n.a. PREDICTED: probable receptor-like protein kinase At1g80640-like [Glycine max] gi|356557227|ref|XP_003546919.1| chr3 353202 356605 -
2 domain predictions
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Lj3g3v0065490.1
n.a. S-locus-specific glycoprotein S6 [Medicago truncatula] gi|357455241|ref|XP_003597901.1| chr3 638626 644174 +
2 domain predictions
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Lj3g3v0211990.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101-like [Glycine max] gi|356556159|ref|XP_003546394.1| chr3 1332254 1338090 +
2 domain predictions
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Lj3g3v0303780.1
n.a. PREDICTED: LOW QUALITY PROTEIN: inactive protein kinase SELMODRAFT_444075-like [Glycine max] gi|356550454|ref|XP_003543602.1| chr3 2207888 2214202 +
2 domain predictions
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Lj3g3v0310070.1
n.a. PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Glycine max] gi|356547351|ref|XP_003542077.1| chr3 2319016 2326925 -
2 domain predictions
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Lj3g3v0323220.1
n.a. PREDICTED: beta-fructofuranosidase, cell wall isozyme-like isoform 2 [Glycine max] gi|356556771|ref|XP_003546696.1| chr3 2399510 2403316 +
2 domain predictions
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Lj3g3v0337890.1
n.a. PREDICTED: U-box domain-containing protein 35-like [Glycine max] gi|356557343|ref|XP_003546976.1| chr3 2682069 2685292 -
2 domain predictions
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Lj3g3v0339020.1
n.a. lectin protein, partial [Sophora japonica] gi|431837890|gb|AGA94529.1| chr3 2732301 2733704 -
3 domain predictions
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Lj3g3v0381650.1
n.a. Serine/threonine protein kinase-like protein ACR4 [Medicago truncatula] gi|357454477|ref|XP_003597519.1| chr3 3047882 3051899 -
2 domain predictions
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Lj3g3v0392830.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357515961|ref|XP_003628269.1| chr3 3171239 3176050 +
2 domain predictions
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Lj3g3v0392830.2
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357515961|ref|XP_003628269.1| chr3 3172546 3176050 +
2 domain predictions
 –