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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0065490 |
| Transcript ID | Lj3g3v0065490.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | S-locus-specific glycoprotein S6 [Medicago truncatula] gi|357455241|ref|XP_003597901.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 8 | 8 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| PIRSF | 7 | 807 | 801 | 7.80E-202 | ||
| TMHMM | 7 | 26 | 20 | – | – | |
| Phobius | 9 | 21 | 13 | – | – | |
| PANTHER | 12 | 809 | 798 | 0 | – | |
| PANTHER | 12 | 809 | 798 | 0 | – | |
| Phobius | 22 | 26 | 5 | – | – | |
| Phobius | 27 | 49 | 23 | – | – | |
| ProSiteProfiles | 39 | 155 | 117 | 11.507 | ||
| SMART | 45 | 157 | 113 | 7.40E-17 | ||
| Phobius | 50 | 79 | 30 | – | – | |
| CDD | 50 | 157 | 108 | 1.26E-19 | – | |
| Gene3D | 54 | 163 | 110 | 1.80E-20 | ||
| TMHMM | 60 | 82 | 23 | – | – | |
| Phobius | 80 | 426 | 347 | – | – | |
| Pfam | 85 | 169 | 85 | 2.00E-21 | ||
| SUPERFAMILY | 85 | 174 | 90 | 7.20E-23 | ||
| ProSiteProfiles | 326 | 409 | 84 | 7.822 | ||
| SMART | 329 | 408 | 80 | 0.0033 | ||
| CDD | 353 | 409 | 57 | 3.61E-10 | – | |
| Gene3D | 408 | 501 | 94 | 1.70E-14 | ||
| Phobius | 427 | 450 | 24 | – | – | |
| TMHMM | 427 | 449 | 23 | – | – | |
| Phobius | 451 | 810 | 360 | – | – | |
| SUPERFAMILY | 471 | 759 | 289 | 1.50E-78 | ||
| SMART | 488 | 758 | 271 | 2.00E-31 | ||
| ProSiteProfiles | 488 | 761 | 274 | 36.598 | ||
| Pfam | 491 | 756 | 266 | 4.20E-51 | ||
| CDD | 494 | 761 | 268 | 5.72E-87 | – | |
| ProSitePatterns | 494 | 517 | 24 | – | ||
| Gene3D | 502 | 562 | 61 | 1.40E-22 | – | |
| Gene3D | 563 | 764 | 202 | 1.10E-43 | – | |
| ProSitePatterns | 609 | 621 | 13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | Protein serine/threonine kinase activity | Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of Lj3g3v0065490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0065490.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.