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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016140
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 177 results. Now displaying 2 of 4 with 50 rows per page. This search has taken 5.976s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v2657270.1
n.a. Protease inhibitor/seed storage/LTP family protein [Medicago truncatula] gi|357505755|ref|XP_003623166.1| chr2 35761161 35761556 +
3 domain predictions
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Lj2g3v3209760.1
n.a. Seed specific protein Bn15D18B [Medicago truncatula] gi|357494699|ref|XP_003617638.1| chr2 41091350 41091807 -
3 domain predictions
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Lj2g3v3224500.1
n.a. MtN5 protein [Medicago truncatula] gi|357494771|ref|XP_003617674.1| chr2 41295268 41316077 +
4 domain predictions
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Lj2g3v3224500.3
n.a. MtN5 protein [Medicago truncatula] gi|357494771|ref|XP_003617674.1| chr2 41315320 41316077 +
4 domain predictions
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Lj3g3v0300640.1
n.a. Non-specific lipid-transfer protein-like protein [Medicago truncatula] gi|357518817|ref|XP_003629697.1| chr3 2136596 2137757 +
3 domain predictions
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Lj3g3v1406290.1
n.a. lipid transfer protein-like protein [Retama raetam] gi|16930759|gb|AAL32039.1|AF439280_1 chr3 18072964 18074673 -
4 domain predictions
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Lj3g3v1425040.1
n.a. PREDICTED: non-specific lipid-transfer protein 3-like [Cicer arietinum] gi|502146516|ref|XP_004506487.1| chr3 18526957 18528655 +
4 domain predictions
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Lj3g3v2809160.1
n.a. PREDICTED: non-specific lipid-transfer protein 13-like [Glycine max] gi|356542149|ref|XP_003539533.1| chr3 34424125 34425395 -
2 domain predictions
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Lj3g3v2809170.1
n.a. PREDICTED: non-specific lipid-transfer protein 13-like [Glycine max] gi|356542149|ref|XP_003539533.1| chr3 34424857 34425395 -
2 domain predictions
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Lj3g3v2809690.1
n.a. Cortical cell-delineating protein [Medicago truncatula] gi|357476911|ref|XP_003608741.1| chr3 34547018 34547777 -
3 domain predictions
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Lj3g3v2809710.1
n.a. Cortical cell-delineating protein [Medicago truncatula] gi|357476911|ref|XP_003608741.1| chr3 34551742 34552778 -
3 domain predictions
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Lj3g3v3079080.1
n.a. Seed specific protein Bn15D18B [Medicago truncatula] gi|357494699|ref|XP_003617638.1| chr3 38415037 38415490 +
3 domain predictions
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Lj3g3v3338340.1
n.a. non-specific lipid transfer-like protein [Phaseolus vulgaris] gi|1420887|gb|AAC49370.1| chr3 40923488 40924374 +
4 domain predictions
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Lj3g3v3579330.1
n.a. Seed specific protein Bn15D18B [Medicago truncatula] gi|357474035|ref|XP_003607302.1| chr3 43441479 43442458 -
4 domain predictions
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Lj4g3v0148840.1
n.a. Proline-rich protein [Medicago truncatula] gi|357477499|ref|XP_003609035.1| chr4 1521494 1521966 -
3 domain predictions
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Lj4g3v0338250.1
n.a. PREDICTED: non-specific lipid-transfer protein-like protein At5g64080-like [Glycine max] gi|356524854|ref|XP_003531043.1| chr4 4329660 4331727 -
4 domain predictions
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Lj4g3v0340650.1
n.a. Non-specific lipid-transfer protein [Medicago truncatula] gi|357490701|ref|XP_003615638.1| chr4 4376905 4379135 -
4 domain predictions
 –
Lj4g3v0998970.1
n.a. Seed specific protein Bn15D18B [Medicago truncatula] gi|357494699|ref|XP_003617638.1| chr4 14467482 14468035 +
3 domain predictions
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Lj4g3v1274980.1
n.a. Proline-rich protein [Medicago truncatula] gi|357477499|ref|XP_003609035.1| chr4 18809042 18809999 +
3 domain predictions
 –
Lj4g3v1285050.1
n.a. 14 kDa proline-rich protein DC2.15 [Medicago truncatula] gi|357476925|ref|XP_003608748.1| chr4 18831633 18832695 -
3 domain predictions
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Lj4g3v1881900.1
n.a. PREDICTED: repetitive proline-rich cell wall protein 1 [Vitis vinifera] gi|225445607|ref|XP_002285432.1| chr4 26742346 26744923 -
3 domain predictions
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Lj4g3v2603840.1
n.a. Non-specific lipid-transfer protein-like protein [Medicago truncatula] gi|357518817|ref|XP_003629697.1| chr4 34948210 34949750 +
4 domain predictions
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Lj5g3v0528770.1
n.a. PREDICTED: lipid transfer-like protein VAS-like [Glycine max] gi|356559508|ref|XP_003548041.1| chr5 5746583 5747724 -
3 domain predictions
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Lj5g3v0529330.1
n.a. PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cicer arietinum] gi|502124986|ref|XP_004498751.1| chr5 6060530 6061769 +
3 domain predictions
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Lj5g3v0616370.1
n.a. PREDICTED: non-specific lipid-transfer protein AP10-like [Vitis vinifera] gi|359488913|ref|XP_002283359.2| chr5 8249630 8249962 +
3 domain predictions
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Lj5g3v0999920.1
n.a. PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like isoform X2 [Cicer arietinum] gi|502115364|ref|XP_004495186.1| chr5 15551998 15553728 -
4 domain predictions
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Lj5g3v0999930.1
n.a. Non-specific lipid-transfer protein [Medicago truncatula] gi|357440667|ref|XP_003590611.1| chr5 15554317 15555939 +
4 domain predictions
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Lj5g3v1903720.1
n.a. PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Cucumis sativus] gi|449513419|ref|XP_004164321.1| chr5 27056959 27057239 -
3 domain predictions
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Lj5g3v2027170.1
n.a. PREDICTED: stamen-specific protein FIL1-like [Cicer arietinum] gi|502119376|ref|XP_004496598.1| chr5 28547455 28547863 -
3 domain predictions
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Lj5g3v2045750.1
n.a. PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Glycine max] gi|356534201|ref|XP_003535646.1| chr5 29320604 29322041 -
4 domain predictions
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Lj5g3v2045760.1
n.a. PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Glycine max] gi|356574410|ref|XP_003555341.1| chr5 29322845 29324546 +
4 domain predictions
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Lj6g3v0815550.1
n.a. MtN5 protein [Medicago truncatula] gi|357494771|ref|XP_003617674.1| chr6 8015478 8016230 -
4 domain predictions
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Lj6g3v1720560.1
n.a. 14 kDa proline-rich protein DC2.15 [Medicago truncatula] gi|357448007|ref|XP_003594279.1| chr6 19467539 19468519 -
3 domain predictions
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Lj6g3v2044700.1
n.a. Seed specific protein Bn15D18B [Medicago truncatula] gi|357494699|ref|XP_003617638.1| chr6 24288066 24288620 +
3 domain predictions
 –
Lj6g3v2218650.1
n.a. PREDICTED: non-specific lipid-transfer protein-like protein At5g64080-like [Glycine max] gi|356524854|ref|XP_003531043.1| chr6 25821752 25823819 +
4 domain predictions
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LotjaGi1g1v0021900.1
n.a. Lipid transfer protein; TAIR: AT5G55410.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q8W453|DIRL1_ARATH Putative lipid-transfer protein DIR1; TrEMBL-Plants: tr|I3SBL7|I3SBL7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0021900 LjG1.1_chr1 2691197 2703655 -
3 domain predictions
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LotjaGi1g1v0021900.2
n.a. Lipid transfer protein; TAIR: AT5G55410.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q8W453|DIRL1_ARATH Putative lipid-transfer protein DIR1; TrEMBL-Plants: tr|I3SXR0|I3SXR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0021900 LjG1.1_chr1 2691197 2703655 -
3 domain predictions
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LotjaGi1g1v0022100.1
n.a. Lipid transfer protein; TAIR: AT5G55410.2 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q8W453|DIRL1_ARATH Putative lipid-transfer protein DIR1; TrEMBL-Plants: tr|I3SS85|I3SS85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0022100 LjG1.1_chr1 2715419 2719661 -
3 domain predictions
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LotjaGi1g1v0024500_LC.1
n.a. Protease inhibitor/seed storage/lipid transfer protein family protein; TAIR: AT4G33550.2 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q9S2C0|PKSC_STRCO Serine/threonine-protein kinase PksC; TrEMBL-Plants: tr|V4UB33|V4UB33_9ROSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0024500_LC LjG1.1_chr1 2948444 2949461 +
2 domain predictions
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LotjaGi1g1v0024600.1
n.a. Protease inhibitor/seed storage/lipid transfer protein family protein; TAIR: AT4G33550.2 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q8W453|DIRL1_ARATH Putative lipid-transfer protein DIR1; TrEMBL-Plants: tr|I3SWN7|I3SWN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0024600 LjG1.1_chr1 2951765 2952531 +
2 domain predictions
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LotjaGi1g1v0025200.1
n.a. Protease inhibitor/seed storage/lipid transfer protein family protein; TAIR: AT4G30880.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q2QMX9|ACA1_ORYSJ Calcium-transporting ATPase 1, plasma membrane-type; TrEMBL-Plants: tr|I3SWN7|I3SWN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0025200 LjG1.1_chr1 2991095 2991888 -
2 domain predictions
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LotjaGi1g1v0105400.1
n.a. Protease inhibitor/seed storage/lipid transfer protein family protein; TAIR: AT4G33550.2 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|A1U4B8|CMOA_MARHV Carboxy-S-adenosyl-L-methionine synthase; TrEMBL-Plants: tr|I3SWN7|I3SWN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0105400 LjG1.1_chr1 16280727 16281356 +
2 domain predictions
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LotjaGi1g1v0331700.1
n.a. Protease inhibitor/seed storage/lipid transfer family protein; TAIR: AT4G33550.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q6ASY2|NLTL1_ORYSJ Non-specific lipid transfer protein-like 1; TrEMBL-Plants: tr|I3SWN7|I3SWN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0331700 LjG1.1_chr1 78828810 78829935 -
2 domain predictions
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LotjaGi1g1v0382200.1
n.a. 14 kDa proline-rich protein DC2.15; TAIR: AT2G45180.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|P14009|14KD_DAUCA 14 kDa proline-rich protein DC2.15; TrEMBL-Plants: tr|B7FMX8|B7FMX8_MEDTR Lipid transfer protein; Found in the gene: LotjaGi1g1v0382200 LjG1.1_chr1 86558691 86562125 +
2 domain predictions
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LotjaGi1g1v0452700.1
n.a. Non-specific lipid-transfer protein; TAIR: AT3G51590.1 lipid transfer protein 12; Swiss-Prot: sp|A0AT29|NLTP2_LENCU Non-specific lipid-transfer protein 2; TrEMBL-Plants: tr|A0A0S3RTP9|A0A0S3RTP9_PHAAN Non-specific lipid-transfer protein; Found in the gene: LotjaGi1g1v0452700 LjG1.1_chr1 95294281 95295485 -
3 domain predictions
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LotjaGi1g1v0455500.1
n.a. Non-specific lipid-transfer protein; TAIR: AT5G59320.1 lipid transfer protein 3; Swiss-Prot: sp|Q9LLR7|NLTP3_ARATH Non-specific lipid-transfer protein 3; TrEMBL-Plants: tr|I3SHY1|I3SHY1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0455500 LjG1.1_chr1 95837265 95845195 +
2 domain predictions
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LotjaGi1g1v0455600.1
n.a. Non-specific lipid-transfer protein; TAIR: AT5G01870.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q43129|NLTP2_GOSHI Non-specific lipid-transfer protein; TrEMBL-Plants: tr|I3SCH8|I3SCH8_MEDTR Non-specific lipid-transfer protein; Found in the gene: LotjaGi1g1v0455600 LjG1.1_chr1 95864774 95867628 +
3 domain predictions
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LotjaGi1g1v0455700.1
n.a. Non-specific lipid-transfer protein; TAIR: AT5G01870.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q9M5X8|NLTP_PRUAV Non-specific lipid-transfer protein; TrEMBL-Plants: tr|I3SCH8|I3SCH8_MEDTR Non-specific lipid-transfer protein; Found in the gene: LotjaGi1g1v0455700 LjG1.1_chr1 95884115 95887145 +
3 domain predictions
 –
LotjaGi1g1v0455900.1
n.a. Non-specific lipid-transfer protein; TAIR: AT2G38530.1 lipid transfer protein 2; Swiss-Prot: sp|Q43129|NLTP2_GOSHI Non-specific lipid-transfer protein; TrEMBL-Plants: tr|G7KY43|G7KY43_MEDTR Non-specific lipid-transfer protein; Found in the gene: LotjaGi1g1v0455900 LjG1.1_chr1 95899595 95905274 +
3 domain predictions
 –
LotjaGi1g1v0577300.1
n.a. Protease inhibitor/seed storage/lipid transfer family protein; TAIR: AT3G53980.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q8W453|DIRL1_ARATH Putative lipid-transfer protein DIR1; TrEMBL-Plants: tr|I3SLU7|I3SLU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0577300 LjG1.1_chr1 111659175 111660252 +
3 domain predictions
 –