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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017986
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We have found 823 results. Now displaying 17 of 17 with 50 rows per page. This search has taken 5.863s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi6g1v0245900.1
n.a. Katanin p80 WD40 repeat-containing subunit B1 homolog; TAIR: AT5G17370.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8WV16|DCAF4_HUMAN DDB1- and CUL4-associated factor 4; TrEMBL-Plants: tr|A0A072VGT0|A0A072VGT0_MEDTR Transducin/WD-like repeat-protein; Found in the gene: LotjaGi6g1v0245900 LjG1.1_chr6 55816218 55823554 +
2 domain predictions
1 GO term
LotjaGi6g1v0247400.2
n.a. Nucleolar protein 10; TAIR: AT3G56990.1 embryo sac development arrest 7; Swiss-Prot: sp|Q7T0Q5|NOL10_XENLA Nucleolar protein 10; TrEMBL-Plants: tr|I1L412|I1L412_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0247400 LjG1.1_chr6 55960298 55968566 +
2 domain predictions
1 GO term
LotjaGi6g1v0250700.1
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G06880.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1; TrEMBL-Plants: tr|K7MBF1|K7MBF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0250700 LjG1.1_chr6 56284642 56297774 +
2 domain predictions
1 GO term
LotjaGi6g1v0250700.2
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G06880.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1; TrEMBL-Plants: tr|K7MBF1|K7MBF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0250700 LjG1.1_chr6 56285035 56297751 +
2 domain predictions
1 GO term
LotjaGi6g1v0250800.1
n.a. WD40 repeat-like protein; TAIR: AT4G15900.1 pleiotropic regulatory locus 1; Swiss-Prot: sp|Q42384|PRL1_ARATH Protein pleiotropic regulatory locus 1; TrEMBL-Plants: tr|A0A151T5Z5|A0A151T5Z5_CAJCA PP1/PP2A phosphatases pleiotropic regulator PRL1; Found in the gene: LotjaGi6g1v0250800 LjG1.1_chr6 56299707 56305738 +
2 domain predictions
1 GO term
LotjaGi6g1v0253600.1
n.a. WD-repeat protein, putative; TAIR: AT3G16830.1 TOPLESS-related 2; Swiss-Prot: sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2; TrEMBL-Plants: tr|A0A1J7H667|A0A1J7H667_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0253600 LjG1.1_chr6 56575819 56586137 +
2 domain predictions
1 GO term
LotjaGi6g1v0257200.1
n.a. WD-repeat protein, putative; TAIR: AT5G49430.1 WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein; Swiss-Prot: sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1; TrEMBL-Plants: tr|K7MBB5|K7MBB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0257200 LjG1.1_chr6 56998472 57015486 -
2 domain predictions
1 GO term
LotjaGi6g1v0257200.2
n.a. WD40 repeat-like protein; TAIR: AT5G49430.1 WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein; Swiss-Prot: sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1; TrEMBL-Plants: tr|K7MBB4|K7MBB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0257200 LjG1.1_chr6 56998912 57015533 -
2 domain predictions
1 GO term
LotjaGi6g1v0272500.1
n.a. Transducin family protein / WD-40 repeat family protein; TAIR: AT4G05410.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9M0V4|YAO_ARATH U3 snoRNP-associated protein-like YAO; TrEMBL-Plants: tr|A0A0L9VDN2|A0A0L9VDN2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0272500 LjG1.1_chr6 58744379 58758796 -
2 domain predictions
1 GO term
LotjaGi6g1v0279100.1
n.a. Transducin/WD40 repeat protein; TAIR: AT3G13340.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03; TrEMBL-Plants: tr|A0A151T6B1|A0A151T6B1_CAJCA Putative WD repeat-containing protein C2A9.03; Found in the gene: LotjaGi6g1v0279100 LjG1.1_chr6 59594365 59600311 -
2 domain predictions
1 GO term
LotjaGi6g1v0279100.2
n.a. Transducin/WD40 repeat protein; TAIR: AT3G13340.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03; TrEMBL-Plants: tr|A0A151T6B1|A0A151T6B1_CAJCA Putative WD repeat-containing protein C2A9.03; Found in the gene: LotjaGi6g1v0279100 LjG1.1_chr6 59595361 59599626 -
2 domain predictions
1 GO term
LotjaGi6g1v0279100.3
n.a. Transducin/WD40 repeat protein; TAIR: AT3G13340.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03; TrEMBL-Plants: tr|A0A151T6B1|A0A151T6B1_CAJCA Putative WD repeat-containing protein C2A9.03; Found in the gene: LotjaGi6g1v0279100 LjG1.1_chr6 59595417 59599687 -
2 domain predictions
1 GO term
LotjaGi6g1v0279100.4
n.a. Transducin/WD40 repeat protein; TAIR: AT3G13340.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03; TrEMBL-Plants: tr|A0A151T6B1|A0A151T6B1_CAJCA Putative WD repeat-containing protein C2A9.03; Found in the gene: LotjaGi6g1v0279100 LjG1.1_chr6 59595417 59599906 -
2 domain predictions
1 GO term
LotjaGi6g1v0279100.5
n.a. Transducin/WD40 repeat protein; TAIR: AT3G13340.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03; TrEMBL-Plants: tr|A0A151T6B1|A0A151T6B1_CAJCA Putative WD repeat-containing protein C2A9.03; Found in the gene: LotjaGi6g1v0279100 LjG1.1_chr6 59595417 59599907 -
2 domain predictions
1 GO term
LotjaGi6g1v0280300.1
n.a. Enhancer of mRNA-decapping protein 4; TAIR: AT3G13300.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9LTT8|VCS_ARATH Enhancer of mRNA-decapping protein 4; TrEMBL-Plants: tr|V7BSL4|V7BSL4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0280300 LjG1.1_chr6 59676576 59687272 -
2 domain predictions
1 GO term
LotjaGi6g1v0304000.3
n.a. Transducin/WD-like repeat-protein; TAIR: AT4G03020.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O24467|LE14B_PRUAR LEC14B homolog; TrEMBL-Plants: tr|A0A0L9VEN6|A0A0L9VEN6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304000 LjG1.1_chr6 62148305 62155008 -
2 domain predictions
1 GO term
LotjaGi6g1v0304000.4
n.a. Transducin/WD-like repeat-protein; TAIR: AT4G03020.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O24467|LE14B_PRUAR LEC14B homolog; TrEMBL-Plants: tr|A0A0L9VEN6|A0A0L9VEN6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304000 LjG1.1_chr6 62148587 62154240 -
2 domain predictions
1 GO term
LotjaGi6g1v0320200.1
n.a. WD40 repeat-like protein; TAIR: AT3G18140.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q54D08|LST8_DICDI Protein LST8 homolog; TrEMBL-Plants: tr|I3S6V4|I3S6V4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0320200 LjG1.1_chr6 63681594 63687611 +
2 domain predictions
1 GO term
LotjaGi6g1v0320200.2
n.a. WD40 repeat-like protein; TAIR: AT3G18140.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q54D08|LST8_DICDI Protein LST8 homolog; TrEMBL-Plants: tr|I3S6V4|I3S6V4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0320200 LjG1.1_chr6 63681888 63685187 +
2 domain predictions
1 GO term
LotjaGi6g1v0322600.1
n.a. WD40 repeat-like protein; TAIR: AT1G29260.1 peroxin 7; Swiss-Prot: sp|Q9XF57|PEX7_ARATH Peroxisome biogenesis protein 7; TrEMBL-Plants: tr|I1M1T5|I1M1T5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0322600 LjG1.1_chr6 63855128 63860712 -
2 domain predictions
1 GO term
LotjaGi6g1v0336900.1
n.a. Katanin p80 WD40 repeat-containing subunit B1 homolog; TAIR: AT1G61210.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog; TrEMBL-Plants: tr|G7ILH1|G7ILH1_MEDTR Katanin p80 WD40 repeat-containing subunit B1 homolog; Found in the gene: LotjaGi6g1v0336900 LjG1.1_chr6 65126456 65145010 +
2 domain predictions
1 GO term
LotjaGi6g1v0354700.1
n.a. WD40 repeat-like protein; TAIR: AT1G80670.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q38942|RAE1_ARATH Protein RAE1; TrEMBL-Plants: tr|A0A151T0F9|A0A151T0F9_CAJCA Rae1-like protein family; Found in the gene: LotjaGi6g1v0354700 LjG1.1_chr6 66652835 66659284 +
2 domain predictions
1 GO term
LotjaGi6g1v0363400.1
n.a. Ribosome biogenesis protein BOP1 homolog; TAIR: AT2G40360.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|F4IH25|BOP1_ARATH Ribosome biogenesis protein BOP1 homolog; TrEMBL-Plants: tr|K7MED3|K7MED3_SOYBN Ribosome biogenesis protein BOP1 homolog; Found in the gene: LotjaGi6g1v0363400 LjG1.1_chr6 67500420 67506639 +
2 domain predictions
1 GO term