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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0363400 |
| Transcript ID | LotjaGi6g1v0363400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome biogenesis protein BOP1 homolog; TAIR: AT2G40360.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|F4IH25|BOP1_ARATH Ribosome biogenesis protein BOP1 homolog; TrEMBL-Plants: tr|K7MED3|K7MED3_SOYBN Ribosome biogenesis protein BOP1 homolog; Found in the gene: LotjaGi6g1v0363400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67500420..67506639) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAGTGCAAGTGTCAGTAAAACCCTTTCTGTCTACATAACACACTCGGAGCAAAACCCTAACTAACACAGAAGCCAAC TCATGACGGAGAAGAAGAAGAACAAGACGATGAGGGAGAATGATGAGGGAGCTCCTTTTCCTTCTGATATTGTTACTTCC CCAGCTGTATCCGATTCTGACTCCGATTACGAGGTATATGGATTCGATTCTCTCTCATTCATCGCATTTAGCTTCATTCA CTATACTACTCATGCTTACCTACCTACACACACGCTTGCAGTCCGATGACGCCGACTCTTCTTCAGATGACTCCTTGGAT TCCCAATCTCAATCTGATTTTCAATTCGACTCACCAGAGCATGCTAGCTCCGATGATTCAGAACCTGCATCTTCTCAAGA TGAGGTGCATCACTATCTTCCTTAGTATCCTACCTATGTTGTTCTTCAGCACCGATAATTAACCTGCTTAAAACCAATCA TTGCAGGATCATGATGATGATGATGATGATGATGAAGATAGTCAAAGTGAGAACTCCGAAAGCCACCAGGGAGGGGATGA GAGTGACTCCTCGGAGGATGAGGTGCCCATCTTATCTCCTGTTATACTTGATTCTGCTTTTTCATTCTATGCATTGAGTT TGCTAACTTTGTTTTTCTTTTTCTCTTTTCATAGGTGGCTCCGCGAAATACTGTTGGAGACGTCCCGTTGCAGTGGTATG AGGATGAACCCCATATTGGATACGACAACACGGGAAAGAAGATTAAGAAAAGAGAAAAGCAAGACAAATTGGATTCCTTT CTTGCCAACATTGATGATTCTAAGCATTGGTTAGCTTCATATTTCTACACCAACTTATTATCCATTTTCATTATTGCTGT AACTTCTACACTCACTATACCTCTGAAGCCTTAGATATGAATTGCAATGCTTTTGTTTTTTATTCCCCCTCTCTCAAATG GAAATTATGACTAGTAATAGATAAACTGGGTACATTTCAATTTAATGAAAATGTAAATCAAAGGATGATAATGGAAAAAT TGCAAGAGTTGCACCTAAGATAGATTGAACACATGAGAGGGATACCTATAGAGGCTCCGTTCAAAAAAAGTGTTGATTAC ATAGAGGATAGTCAAACTATTAAAGGTAGAGATTGTCCAAGAAAGACTCAATTTAAAGCTATTAAAAAGTATCTTTAGTT AAGTAGTCACTGAATAATTGGTTTTCGATATAATCACAATGGCTTACATTTGGTTCATGTAAGCTGATCCTAGCTGGAAA ACATCTTTAATTTGTCGTCTTTCTTAAACATTCAAGGCAGAAGATCGTTGATGAGTACAATGATGAAGTAGTTGAGCTGA CGAAAGAGGAGATCAAAATTGTCCGTAGACTGCTCAAGAGCCGGGCACCACATTCTGACTTTGACCCAAATCCGGTCTGT ATAAACTTCCCTTCTCATTTTAACCTTTTCTTTAGATTTTCTGTCTCAAATAAGGTTTAAAGGAAAATTAGTATGCATAA TGTTGCTCGTTTTCATCTCTCCTTTCAATGTACAGGATTATGTTGACTGGTTTAAATGGGATGATGCCAACCATCCAATT TCTAATGCACCTGAACCAAAAAGAAGGTTTATTCCCTCAAAGTGGGAAGCTAAAAAGGTAACTACTCCTGCATTTTCTTT TTGCACATAATAATTTGAAATGGGTCAATCAACTAGTATGGAGATTGTTCAGGTTAGATAAAAAACGCAAATTGGTTCCT CTCATCACTCATACACTTCCACGATTCTACAGGTTGTGCAGTATGTTAGAGCAATTCGCAAGGGATTAATAACTTTTGAC AAGCCAAAGGAGGAAGATGGTCCATATCTCTTGTGGGAAGATGATTCTGGTTTGACTGAAAAAGCAAATCATTTGGCTTA CATTCCTGCACCAAAGCAGAAATTTCCTGGTATCAAATGTTGCATAAATTTTGCAGTTCAAGATGATAGTAATTTTGTCT TTTAGGCTATGATGAGTCATATAATCCTCCCTTAGCTATTAGTAAATAATTTAGTTTTGCTTCTCAGGCCATGATGAGTC ATATAATCCTCCTCTAGAGTACATTCCAACCCAAGAAGAGTTGAATTCATATCAATTGATGCCTGAAGATGACCGCCCTA AGTTTATCCCGAAAAGGTACTATGTTTTCAAGGTTAACATTTTTTATTCCTTCCTCTTTTCTACTATTGAACTAATATAT ATCAATTTCATCAGGTTTACATCTATTAGAAGCATCCCTGCATATGAGAATGCTATGACGGAATGTTTTGAACGCTGTAT GGATTTGTACTTGTGTCCTCGAGTTCGAAAAAAACGTGTGAGTGGTTTCCCATATCAAAGAACTAATTTATTGTTTTTGT TGAGAATGTTTTAAATTAATTTGTTGCCGCTTGTTAGTTACATTCTATTTATATCATAATATAATTGGTATTATTCATTT TTCCCCCTTCATGTGTTCTAGATTCAAATTGATCCTGAAGCCTTAAAGCCAAAGCTTCCAAATAGAAAGGAGCTTAAGCC TTATCCCATAACATGCTATATCGAGTATAAAGGCCATGAAGATGCAGTCACTTCAATTTCGGTTGAATCATCAGGGCAGT GGATGGCTTCAGGTATGGGTGTTGGTGATATATGTTTCTGTTTCAATTAAGCTGGGATGGAATTGAGTCTCCTAATTTTT TTTTTGTCTGCTAAGGTTCAAGTGATGGAACTGTCCGTGTCTGGGAGGTTGAAACTGGCAGATGTCTCAGGCGATGGGAG GTTGGTGAAGCTGTTAACTGTGTTGCGTGGAACCCTCTGCCTGATATTCATATTCTGGCTGTCTCAGTGTAAGTATGGTT TCAGTGAAAATAAGCTTTCCTCTTTAATCTACATATGTCTTTCTTGTGAAAATTAATCAATGGTAAATCTTCCATTTAGG GGACAAGATGTACTTCTACTGAACACTTGTGTGGGCGACGAAGAAGAACAGAAAAGGATTAATGAGCTTCTCTGGGTTGA CTCATCAATTGCATCACATGACTCTGGTTAGCGTTTCCACTTCTTTCTTTGGATTTATTCTAACCATTGATTCAAAAGAA GGCTCGAAGGGTCCCCGACTCCTAAGTTGACCTATGACCCTCAACTTAACTTTTAATTATAGGAAAAAAAAGTTAAGCTC AGAATTTAAAGCTTACTGGTCATTATGGGAGGATATTGACTTTATATTCGCATCAATGCGTATGATGTCTGATTCCCTTG CTTGTATGCTTATTGTTATTTTCTGACAATGCTTGTGTTTGCAGGCAAACAATCTCCTAGTGTAAGCTGGCTTAGAGATG ATAAACATGCGGGTATACGGTTAAAACATATTAAGGTATTTCCATATTTGTCTCCATTTCCAATTTGGTTTTTGCTTTTT TGTTGAATGTTGAATTTTTTTATACTGAACTTTAGAGGATGTCTTCACGCAGACTGTTACTTCTGTGGAATGGCACCGGA GAGGTGACTACTTTTCAACAGTGATGCCAGCAGATATCCTTTTTATTTGCGGCCTTAGAGTAAACTGATACATATTTCAT TATCATTGGTTAATTACTTGAAAATGACAACAATGAGTCTACATCTCAATGTGGTGATAACTGTTCAATTTTCTTTTTAT TTTAGTTATGCTGTTGAAATTTTATATGCTTGACTTTTCTTTATAACTTGTAAGGACATAATGAACATAAAGGTGCACAT ACTTTTTATTGCACACGCATGTCACTGCATATATACCTTATTGGCAGTTTTATCTTCCTCAAACATGGCATGGGGCTTGG TTGGCTTTTGACACATCTAATTATCATAAAGAACCATTTAGACGTGAGTTTTATTTGTCTTGTCATTTCCCCCATTCCAT GTCATATCTTCTGCCATTCACGACTTGTTTTGTGTGTGGATATTTGATTGACGGATCTCATTGAAAACAAACTGTATTAA ACTTGTTCTTGATTACTAACTTTTTAGTTGACTTTTATATTAAGTGGATGAAAGGAAACTTACAGGCATGAGATATTAAA TTAGGGACTTGTTCGTGTTTTTCCTTGACGTATTAATTACGTGAATCTAGATCAGTTCTGATCCACCAATTGTCGAAGAA GGTTACACAAAAACTTCCATTTAAGTTAAGCGAACTTGTTGTTGGATCAACCTTCCATCCATCCCTTTCCATCTTCTTTG TTTGTACAAAAAGGATTGTTCGTGTGTATGATTTAGTGAAGTCTAAGCGCTTAAAAAAGCTTTATACTGGGCTTAGTGAA GCCTCGTCCATTGCAGTTCATCCTGGAGGTATGATTATTATTTTGTGAATAAATTATATTGTAATCAGTTTTCCTCTAGT TGTAACCACTGAATTTTTTTTTTCATAATTGTTTATCTGTGCACATTCATGCAGGAGATAATTTAATTGTGGGGAGCAAA GAAGGGAAAATGTGCTGGTTTGACATGGACCTTTCATCTAAACCTTATAAAACTCTTAAGTAAGTCTTTAGTAGTTAATT TAAATTTGAAATCAATAGCAAACTGCACATTCTTTTGTGCCACAGGTTCTCTGCTTCCTAATGCAGATCATATTTTACAG TATGCTATAAAGTCGCTAGAATGACTGGTAGAAATAATTTGCTTTAAGGAATTTACCGGAAAAATTAAGACTGAACTAAC ATTCTTATTATGCTATTAATTCTTTGATATGCTACAATTTGGAGATAAAACCTCACTTTTCTGTATTTATGTCATGACAG CATTTTTAATAATGTGATGATATTGTAGGTGTCACCCGAAAGATATCAACAATGTGGTCTTCCACCGTTCATATCCCTTG TTTGCTTCATGTTCAGATGATTGCACTGCATATGTTTTTCACGGAATGGTTTATTCTGATCTCAATCAAAATCCTCTTAT TGTTCCTTTGGAAATTCTACGAGGCCATACAAATTCAAATGGTAGAGGTGAGTGCTGTTTATTTTTGGCTTATTAGCAGA GCCAGCATATTGCTTGATGTTTTTTTTTCGCTTATCTCCTAAAAGGGTGACGGTTTATTAGTTTGGAGATGTGTGTTGAC GAAAGTTATATCCATTGAATTGTGTTAGTTTTATCTAAGTTAGCTGAAGAAAAAAAGAAGACAAATCAAGCGATTTAACT CCAATATCAGTTTATGATTGTTGGATCAGAAGAACCAAAATTTAGGTTTTGTTCTGTACTGGCATATCCTTGTTTGTGAC AGATTTAAGTCTACTTGCTGCTTTGGTGAACATTTATTGTGGTCCTTATAGGTTAGTTGGTATATATATTTTTTTATTAG CATAGGCAGATAATAGTAAGAAATAAAAATCCTGCCGGGTTGTGATGGTTGAGCAATATGCATAAAAATACAAAGAAAGT AGGAAAGACACAATGCAGACCCATACTTGCTGATTAAATTTTAATAGCTTTGGACTTCAGCTGACGCAATAATAAGCCCA ATTTTTTTTGGTGTTTTTGTTGACATGATCAACAATCCTTTATGTTTGATGTACTTTCCACTTGACGATGTATTTAGAGA TTACGTATATTACCATGTTCAAAAAAGACATTTCTTATCTTACATGGATGTTGGCTGTATTGCAGGGATATTGGATTGCA AATTTCATCCCAGACAGCCCTGGTTATTTACGGCCGGTGCTGATAAACTTATTAAAGTTTACTGCCATCAATAAAAATAT GGATATTTTGCTAAACACATGCTTGTGATAGGTGGATCTCATCTATAAAAGGGAAGGGCACCTGGTTAAATAGAGAGCAT TGCTTGCCCCAAATGGAAGGGCACCTGGTGTGCGAGTTTCAGGCCCTCTGTTTTCTAGTTTATTGGTGGAGAATCAATCA ATATAATGCAGTGGGTAAATTTTATTCCACACTCCACATCTATCTTATTCAATCTTCCGAAGAAATATTATTCCAGGAAT TTATATTCGTAAAACTTTGTTTACGGTTGAAACAATTAAAATTTTGATGTAATATATATATACACCAAGAGAAGCCAATT ATTCCTAGAAATTTTTGAGATTTTTTGTGTGAACATTTATTACATTGCGAAATTTGAGATTGAATGGGACACCTATATGT TTTTACTATGCCTCATCTATGGCTCTTTGTAGTTTCTACTGTTATGGAGCTTTCCCAAAC
CDS sequence (LotjaGi6g1v0363400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGAGAAGAAGAAGAACAAGACGATGAGGGAGAATGATGAGGGAGCTCCTTTTCCTTCTGATATTGTTACTTCCCC AGCTGTATCCGATTCTGACTCCGATTACGAGTCCGATGACGCCGACTCTTCTTCAGATGACTCCTTGGATTCCCAATCTC AATCTGATTTTCAATTCGACTCACCAGAGCATGCTAGCTCCGATGATTCAGAACCTGCATCTTCTCAAGATGAGGATCAT GATGATGATGATGATGATGATGAAGATAGTCAAAGTGAGAACTCCGAAAGCCACCAGGGAGGGGATGAGAGTGACTCCTC GGAGGATGAGGTGGCTCCGCGAAATACTGTTGGAGACGTCCCGTTGCAGTGGTATGAGGATGAACCCCATATTGGATACG ACAACACGGGAAAGAAGATTAAGAAAAGAGAAAAGCAAGACAAATTGGATTCCTTTCTTGCCAACATTGATGATTCTAAG CATTGGCAGAAGATCGTTGATGAGTACAATGATGAAGTAGTTGAGCTGACGAAAGAGGAGATCAAAATTGTCCGTAGACT GCTCAAGAGCCGGGCACCACATTCTGACTTTGACCCAAATCCGGATTATGTTGACTGGTTTAAATGGGATGATGCCAACC ATCCAATTTCTAATGCACCTGAACCAAAAAGAAGGTTTATTCCCTCAAAGTGGGAAGCTAAAAAGGTTGTGCAGTATGTT AGAGCAATTCGCAAGGGATTAATAACTTTTGACAAGCCAAAGGAGGAAGATGGTCCATATCTCTTGTGGGAAGATGATTC TGGTTTGACTGAAAAAGCAAATCATTTGGCTTACATTCCTGCACCAAAGCAGAAATTTCCTGGCCATGATGAGTCATATA ATCCTCCTCTAGAGTACATTCCAACCCAAGAAGAGTTGAATTCATATCAATTGATGCCTGAAGATGACCGCCCTAAGTTT ATCCCGAAAAGGTTTACATCTATTAGAAGCATCCCTGCATATGAGAATGCTATGACGGAATGTTTTGAACGCTGTATGGA TTTGTACTTGTGTCCTCGAGTTCGAAAAAAACGTATTCAAATTGATCCTGAAGCCTTAAAGCCAAAGCTTCCAAATAGAA AGGAGCTTAAGCCTTATCCCATAACATGCTATATCGAGTATAAAGGCCATGAAGATGCAGTCACTTCAATTTCGGTTGAA TCATCAGGGCAGTGGATGGCTTCAGGTTCAAGTGATGGAACTGTCCGTGTCTGGGAGGTTGAAACTGGCAGATGTCTCAG GCGATGGGAGGTTGGTGAAGCTGTTAACTGTGTTGCGTGGAACCCTCTGCCTGATATTCATATTCTGGCTGTCTCAGTGG GACAAGATGTACTTCTACTGAACACTTGTGTGGGCGACGAAGAAGAACAGAAAAGGATTAATGAGCTTCTCTGGGTTGAC TCATCAATTGCATCACATGACTCTGGCAAACAATCTCCTAGTGTAAGCTGGCTTAGAGATGATAAACATGCGGGTATACG GTTAAAACATATTAAGACTGTTACTTCTGTGGAATGGCACCGGAGAGGTGACTACTTTTCAACAGTGATGCCAGCAGGTG AATCTAGATCAGTTCTGATCCACCAATTGTCGAAGAAGGTTACACAAAAACTTCCATTTAAGTTAAGCGAACTTGTTGTT GGATCAACCTTCCATCCATCCCTTTCCATCTTCTTTGTTTGTACAAAAAGGATTGTTCGTGTGTATGATTTAGTGAAGTC TAAGCGCTTAAAAAAGCTTTATACTGGGCTTAGTGAAGCCTCGTCCATTGCAGTTCATCCTGGAGGAGATAATTTAATTG TGGGGAGCAAAGAAGGGAAAATGTGCTGGTTTGACATGGACCTTTCATCTAAACCTTATAAAACTCTTAAGTGTCACCCG AAAGATATCAACAATGTGGTCTTCCACCGTTCATATCCCTTGTTTGCTTCATGTTCAGATGATTGCACTGCATATGTTTT TCACGGAATGGTTTATTCTGATCTCAATCAAAATCCTCTTATTGTTCCTTTGGAAATTCTACGAGGCCATACAAATTCAA ATGGTAGAGGGATATTGGATTGCAAATTTCATCCCAGACAGCCCTGGTTATTTACGGCCGGTGCTGATAAACTTATTAAA GTTTACTGCCATCAATAA
Protein sequence (LotjaGi6g1v0363400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEKKKNKTMRENDEGAPFPSDIVTSPAVSDSDSDYESDDADSSSDDSLDSQSQSDFQFDSPEHASSDDSEPASSQDEDH DDDDDDDEDSQSENSESHQGGDESDSSEDEVAPRNTVGDVPLQWYEDEPHIGYDNTGKKIKKREKQDKLDSFLANIDDSK HWQKIVDEYNDEVVELTKEEIKIVRRLLKSRAPHSDFDPNPDYVDWFKWDDANHPISNAPEPKRRFIPSKWEAKKVVQYV RAIRKGLITFDKPKEEDGPYLLWEDDSGLTEKANHLAYIPAPKQKFPGHDESYNPPLEYIPTQEELNSYQLMPEDDRPKF IPKRFTSIRSIPAYENAMTECFERCMDLYLCPRVRKKRIQIDPEALKPKLPNRKELKPYPITCYIEYKGHEDAVTSISVE SSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNPLPDIHILAVSVGQDVLLLNTCVGDEEEQKRINELLWVD SSIASHDSGKQSPSVSWLRDDKHAGIRLKHIKTVTSVEWHRRGDYFSTVMPAGESRSVLIHQLSKKVTQKLPFKLSELVV GSTFHPSLSIFFVCTKRIVRVYDLVKSKRLKKLYTGLSEASSIAVHPGGDNLIVGSKEGKMCWFDMDLSSKPYKTLKCHP KDINNVVFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTNSNGRGILDCKFHPRQPWLFTAGADKLIK VYCHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 15 | 15 | - | – | |
| Hamap | 1 | 723 | 723 | 44.469 | ||
| MobiDBLite | 1 | 144 | 144 | - | – | |
| PANTHER | 11 | 722 | 712 | 0.0 | ||
| MobiDBLite | 47 | 61 | 15 | - | – | |
| MobiDBLite | 74 | 92 | 19 | - | – | |
| MobiDBLite | 93 | 112 | 20 | - | – | |
| SMART | 125 | 380 | 256 | 1.3E-129 | ||
| Pfam | 125 | 380 | 256 | 7.9E-97 | ||
| Coils | 159 | 179 | 21 | - | – | |
| SUPERFAMILY | 344 | 722 | 379 | 3.3E-50 | ||
| Gene3D | 370 | 724 | 355 | 2.2E-138 | ||
| SMART | 380 | 419 | 40 | 1.6E-9 | ||
| Pfam | 383 | 418 | 36 | 7.1E-9 | ||
| ProSiteProfiles | 387 | 428 | 42 | 17.593 | ||
| ProSiteProfiles | 387 | 428 | 42 | 15.742 | ||
| ProSitePatterns | 406 | 420 | 15 | - | ||
| SMART | 422 | 461 | 40 | 18.0 | ||
| SMART | 548 | 583 | 36 | 420.0 | ||
| SMART | 586 | 625 | 40 | 2.3 | ||
| SMART | 629 | 668 | 40 | 1.9E-5 | ||
| Pfam | 631 | 667 | 37 | 0.0012 | ||
| SMART | 680 | 723 | 44 | 9.6E-4 | ||
| Pfam | 683 | 722 | 40 | 3.5E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi6g1v0363400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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