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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0320200 |
| Transcript ID | LotjaGi6g1v0320200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD40 repeat-like protein; TAIR: AT3G18140.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q54D08|LST8_DICDI Protein LST8 homolog; TrEMBL-Plants: tr|I3S6V4|I3S6V4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0320200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63681888..63685187) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGATTGATAGAACACGAAGAAGAAGAAGAAGCAAAGAGTTATGAGCCAGCCAACGGTGATTCTCGCCACCGCCAGT TATGATCACACCATTCGATTTTGGGAGGCCAAGAGTGGCCGCTGCTACCGCACCATCCAATACCCTGATTCAGTTTGATT CTCATTCCTACCTTTTTCTTGTTATTTCTATTTATTTTGCTTTCAAATTTCAGGTGTTGTGTTTCCAATTTGCTGAATTT CTCTACTATGCCCATATGTTTTAGTCTTAGAGTTATTGCTATTGTTAGATGGATGGTTGTTGCTACTAGTTTTTTTTTTC AAGGAGAATGGATTTGTATTGTTTTCATAGCGCGGTACTAATTTTACCGTATCGAATTTGTGTAGCAAGTAAACCGGTTG GAGATAACCCCGGATAAACGCTACCTGGCTGCAGCTGGTAATCCTCACATACGGTTGTTTGATATTAACTCAAGTAGTCC TCAGCCGGTATGTGTTTTCAACTGATACACTTAAAAATGGTCATTTTTGTTCTGGTTCTGTGTATTTATTTTCATGGTTG TGTGGCAGGTAATGAGCTATGATTCACATACCAGTAATGTGATGGCAGTTGGGTTTCAATGTGATGGTAACTGGATGTAT TCTGGTTCAGAGGATGGCACGGTTAAGATCTGGGATTTGAGGTGAAGCAGACATCATGTCATCTGATAGTTTTATAGAAT GACTTTGTGCTCTTAAATTTGGTCTAATAGGCCTTTCTTACTTGATGACAAAAATGCAGGGCGCCAGGTTGTCAAAGGGA ATATGAAAGTCGCGCAGCAGTTAACACTGTTGTGCTACACCCAAATCAGGTCACGTTTCTTCTCCATTCCTTGGTGCCTT TACAATTTTTCCCTGGCTTATGATCGCATTACTCATTAAAATGGTATTAAAAGTTAGCAAAGATAACAAGTAATAAAATA ATGCATGAATCACCAGTGACTAGCACTGAAGTGGACTTAGAGCATGTTTACTTTTAGCTTTTTAAAATTTTAATTAAATT AACTAGTTGTTTCTATCAATGGCGTAGTGCGATCCATATAGCTGACCGCACTTAGTGGGATAAGGTTGTTGTTGTTGTTT TTTAACTACTTGTTGTTCTTGTGAGGTTCATTTGACTGTTGGTTTATTGGTTAATGTTTAGATCTGGATTCTGACATACC TCAATTTTAAGAGCATGTTTCTGATTTTTGCATTTCAATTGAAGCATGTACCCTTGATACTCTTTCTTCATTCGCTATGG TTCCTTAGCTTCTGCAATATACAAGTACATCAGATTTCTGTTCTTTTAGGTTCTTGCTTTGTGATTCTCACTCATTATGT ATGTGATCCAACAGACTGAACTCATATCGGGTGATCAAAATGGCAATATTCGTGTGTGGGATTTGACAGCAAATTCCTGC AGTTGTGAGTTGGTATGAGTTTGTACTTATTACCCTTGTATATTTTGTATATGGGTATCAATGTAGAGTCAAAATACTAA ATGTTTTCTGTCCAAAGAATAAATAAATCCAAGATAATATTTCAAAAGAATGAAATGTTTAAATTATAAGTTTTAAGTTG TAGCTCTCAAGGCATATTTCTTGCAAACACATGCTGCTTTCTTTTTTACCTCCCACATGTACTCGTAGACTCAATTATCA TACTCCCCCCACATGTTGTTTTCTTTTACCTATGCCCTTTGGAGAAATGGCATCTCCCAAATCCCTTATGCTTAGGTTGA TCAGTTCTTCTCACAATGTCCTTTCTATTCTCTAAGCCTCCTAAAAAAATATGGATGAAACATTTTTTCAATTTGTGGAA GAAATATAGGTGCCAGAGGTGGATACAGCTGTACGCTCTTTAACAGTAATGTGGGATGGGAGCTTGGTAGTTGCAGCAAA TAATAATGGGACATGTTATGTGTGGCGCCTGTTGCGAGGAACTCAGGTTGTGCCTTCACAAAAAATCTAACAATGATGTT ATCCTCATGTCAAACTTTACTTATTTGTCCTTGTGGAGGATCTTTTTGTGCAGACAATGACAAACTTTGAGCCGCTTCAC AAACTGCAAGCACACAACAGCTACATCCTCAAATGTCTTTTATCACCTGAATTCTGTGAACCCCACAGGTAATAAATATT AGGCTCATGTTTTGTTAGCAAAACAGAAATCTCAACCAAAAGTGAAAATTTAACTACTGAATTTGTATTGTTTGAAAAGA AAAATATCACCAAAGTGTTGAAATTTCATTAAAACAAAATTGATGAATACATAGTGATTCTAATGTGCTGAATGTTTCTA GAACAATTCACTTAGCTTCATTTTCACCATGCATTAAGCAAGCTTGATAATATCAATCTCTCTAGCTACTGATTGACCTC GTAGCTTCAGTAAGATGTTAATAGTTCTTTTTTGTGATATTCTTAAAGGTATTTGGCAACTGCATCTGCTGATCATACTG TCAAGATATGGAATGTTGATGGTTTTACATTAGACAAGACTTTGATAGGTAATTCATGAAGTCATGTGATAATCTAGTGC TTTCTCACGCCCCAACACTTTCCCGAAAACTGGTACTTCATTTCCCTTTAACGAGGTTTGCTGTGTTTCCCAGGTCACCA ACGCTGGGTATGGGACTGTGTCTTCTCAGTGGACGGTGCCTACCTTATTACAGGTACGAGCTTGATAATTTTTTAATATC TGTTTTGCTTATTTGCATTCAGCAACCAGATATATAAATAAGTGTTTAGATTTTAACACTGATGAATTTAATATGCTTTC ATTCTGTGATATTAGTGGGAAATCATTAGAATATTTAAGCTTTCTAGGTAATAGTTATGGTTGTCAAATTGAAGTACAAA AACAAAACATCTAATGGACATTGTAAAAGTTGAAACATTGGTGGTGACTGTACATTTGATTGACCTCCCTAAACTGTTGC TGGGTTAACCATTTTTGTCATTGTTGTTATTTAATGAGTTGTGATTGAAAATGTGTAGCTTTTTGCCTTATGTGTTCCTA TGTTTCCCCCATCTCCCGTAAAATACTCCTTGCATTATCAATTGTGTATTCGTGCAGACTAGATTAACTGTTCTTGGAAA TCAATTATTGCTTCATGTATTCTTTTAAAGCCAATGCATCTTGCCATTGCAGCTTCCTCTGATACAACTGCTAGGCTTTG GTCTATGTCAACTGGTGAAGATATTAAGGTTTACCAAGGGCATCATAAAGCTACAACTTGTTGTGCCCTACACGATGGGG CTGAACCAGCTAGTTCCTGA
CDS sequence (LotjaGi6g1v0320200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCAGCCAACGGTGATTCTCGCCACCGCCAGTTATGATCACACCATTCGATTTTGGGAGGCCAAGAGTGGCCGCTG CTACCGCACCATCCAATACCCTGATTCACAAGTAAACCGGTTGGAGATAACCCCGGATAAACGCTACCTGGCTGCAGCTG GTAATCCTCACATACGGTTGTTTGATATTAACTCAAGTAGTCCTCAGCCGGTAATGAGCTATGATTCACATACCAGTAAT GTGATGGCAGTTGGGTTTCAATGTGATGGTAACTGGATGTATTCTGGTTCAGAGGATGGCACGGTTAAGATCTGGGATTT GAGGGCGCCAGGTTGTCAAAGGGAATATGAAAGTCGCGCAGCAGTTAACACTGTTGTGCTACACCCAAATCAGACTGAAC TCATATCGGGTGATCAAAATGGCAATATTCGTGTGTGGGATTTGACAGCAAATTCCTGCAGTTGTGAGTTGGTGCCAGAG GTGGATACAGCTGTACGCTCTTTAACAGTAATGTGGGATGGGAGCTTGGTAGTTGCAGCAAATAATAATGGGACATGTTA TGTGTGGCGCCTGTTGCGAGGAACTCAGACAATGACAAACTTTGAGCCGCTTCACAAACTGCAAGCACACAACAGCTACA TCCTCAAATGTCTTTTATCACCTGAATTCTGTGAACCCCACAGGTATTTGGCAACTGCATCTGCTGATCATACTGTCAAG ATATGGAATGTTGATGGTTTTACATTAGACAAGACTTTGATAGGTCACCAACGCTGGGTATGGGACTGTGTCTTCTCAGT GGACGGTGCCTACCTTATTACAGCTTCCTCTGATACAACTGCTAGGCTTTGGTCTATGTCAACTGGTGAAGATATTAAGG TTTACCAAGGGCATCATAAAGCTACAACTTGTTGTGCCCTACACGATGGGGCTGAACCAGCTAGTTCCTGA
Protein sequence (LotjaGi6g1v0320200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQPTVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRYLAAAGNPHIRLFDINSSSPQPVMSYDSHTSN VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPE VDTAVRSLTVMWDGSLVVAANNNGTCYVWRLLRGTQTMTNFEPLHKLQAHNSYILKCLLSPEFCEPHRYLATASADHTVK IWNVDGFTLDKTLIGHQRWVWDCVFSVDGAYLITASSDTTARLWSMSTGEDIKVYQGHHKATTCCALHDGAEPASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 316 | 316 | 45.058 | ||
| ProSiteProfiles | 1 | 30 | 30 | 10.041 | ||
| PANTHER | 4 | 311 | 308 | 3.9E-144 | – | |
| PANTHER | 4 | 311 | 308 | 3.9E-144 | ||
| Gene3D | 5 | 310 | 306 | 3.4E-102 | ||
| SUPERFAMILY | 7 | 305 | 299 | 2.16E-64 | ||
| CDD | 7 | 285 | 279 | 3.91751E-53 | – | |
| ProSitePatterns | 8 | 22 | 15 | - | ||
| SMART | 24 | 62 | 39 | 0.76 | ||
| Pfam | 36 | 62 | 27 | 0.19 | ||
| SMART | 67 | 106 | 40 | 1.6E-9 | ||
| Pfam | 69 | 106 | 38 | 2.7E-8 | ||
| ProSiteProfiles | 74 | 108 | 35 | 14.986 | ||
| ProSitePatterns | 93 | 107 | 15 | - | ||
| PRINTS | 93 | 107 | 15 | 1.2E-8 | ||
| SMART | 109 | 147 | 39 | 3.3E-4 | ||
| Pfam | 112 | 147 | 36 | 0.011 | ||
| ProSiteProfiles | 115 | 156 | 42 | 10.609 | ||
| ProSitePatterns | 134 | 148 | 15 | - | ||
| SMART | 150 | 190 | 41 | 3.3 | ||
| SMART | 200 | 243 | 44 | 1.7E-5 | ||
| Pfam | 202 | 243 | 42 | 3.4E-5 | ||
| ProSiteProfiles | 207 | 245 | 39 | 10.375 | ||
| ProSitePatterns | 230 | 244 | 15 | - | ||
| PRINTS | 230 | 244 | 15 | 1.2E-8 | ||
| SMART | 246 | 285 | 40 | 4.1E-7 | ||
| Pfam | 251 | 285 | 35 | 1.4E-5 | ||
| ProSiteProfiles | 253 | 294 | 42 | 13.416 | ||
| PRINTS | 272 | 286 | 15 | 1.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | TOR signaling | A series of molecular signals mediated by TOR (Target of rapamycin) proteins, members of the phosphoinositide (PI) 3-kinase related kinase (PIKK) family that act as serine/threonine kinases in response to nutrient availability or growth factors. | ||
| Cellular component | TORC1 complex | A protein complex that contains at least TOR (target of rapamycin) and Raptor (regulatory-associated protein of TOR), or orthologs of, in complex with other signaling components. Mediates the phosphorylation and activation of S6K. In Saccharomyces, the complex contains Kog1p, Lst8p, Tco89p, and either Tor1p or Tor2p. | ||
| Cellular component | TORC2 complex | A protein complex that contains at least TOR (target of rapamycin) and Rictor (rapamycin-insensitive companion of TOR), or orthologs of, in complex with other signaling components. Mediates the phosphorylation and activation of PKB (also called AKT). In Saccharomyces, the complex contains Avo1p, Avo2p, Tsc11p, Lst8p, Bit61p, Slm1p, Slm2p, and Tor2p. |
Expression pattern of LotjaGi6g1v0320200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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