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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023753
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We have found 223 results. Now displaying 4 of 5 with 50 rows per page. This search has taken 5.597s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v0347610.1
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356577688|ref|XP_003556956.1| chr5 3370517 3374596 +
3 domain predictions
2 GO terms
Lj5g3v0409270.1
n.a. PREDICTED: l-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Cicer arietinum] gi|502091773|ref|XP_004489631.1| chr5 4074362 4076302 -
3 domain predictions
2 GO terms
Lj5g3v0539950.1
n.a. PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Cicer arietinum] gi|502165168|ref|XP_004513450.1| chr5 6441305 6444276 +
3 domain predictions
2 GO terms
Lj5g3v0724730.1
n.a. PREDICTED: monodehydroascorbate reductase [Glycine max] gi|356577825|ref|XP_003557022.1| chr5 10765529 10766078 -
2 domain predictions
2 GO terms
Lj5g3v1015430.1
n.a. PREDICTED: glutathione reductase, chloroplastic/mitochondrial-like isoform X1 [Cicer arietinum] gi|502115176|ref|XP_004495142.1| chr5 16757617 16766224 -
4 domain predictions
2 GO terms
Lj5g3v1495700.1
n.a. FAD/NAD(P)-binding oxidoreductase family protein [Theobroma cacao] gi|508784228|gb|EOY31484.1| chr5 21692903 21696363 +
4 domain predictions
2 GO terms
Lj5g3v1495700.2
n.a. FAD/NAD(P)-binding oxidoreductase family protein [Theobroma cacao] gi|508784228|gb|EOY31484.1| chr5 21692903 21699612 +
3 domain predictions
2 GO terms
Lj5g3v1495700.3
n.a. FAD/NAD(P)-binding oxidoreductase family protein [Theobroma cacao] gi|508784228|gb|EOY31484.1| chr5 21692903 21699612 +
4 domain predictions
2 GO terms
Lj5g3v1795750.1
n.a. n.a. chr5 25614477 25620209 +
3 domain predictions
2 GO terms
Lj5g3v2029490.1
n.a. PREDICTED: protein HOTHEAD-like isoform X2 [Cicer arietinum] gi|502119436|ref|XP_004496619.1| chr5 28692588 28694908 +
3 domain predictions
2 GO terms
Lj5g3v2060670.1
n.a. PREDICTED: thiamine thiazole synthase 2, chloroplastic-like [Cicer arietinum] gi|502119905|ref|XP_004496776.1| chr5 29766508 29768337 -
3 domain predictions
2 GO terms
Lj5g3v2244890.1
n.a. PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Glycine max] gi|356536384|ref|XP_003536718.1| chr5 32541798 32543758 -
3 domain predictions
2 GO terms
Lj6g3v0366930.1
n.a. PREDICTED: probable polyamine oxidase 4-like [Cicer arietinum] gi|502137451|ref|XP_004503087.1| chr6 3449379 3454108 +
2 domain predictions
2 GO terms
Lj6g3v0657940.1
n.a. phytoene desaturase 30-329bp [Lotus japonicus] gi|339790773|dbj|BAK52504.1| chr6 6591260 6592210 +
3 domain predictions
2 GO terms
Lj6g3v0933770.1
n.a. PREDICTED: probable polyamine oxidase 2-like [Glycine max] gi|356567482|ref|XP_003551948.1| chr6 10389103 10393972 +
3 domain predictions
2 GO terms
Lj6g3v1018470.1
n.a. PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like [Glycine max] gi|356512089|ref|XP_003524753.1| chr6 11392187 11393026 +
3 domain predictions
2 GO terms
Lj6g3v1018480.1
n.a. PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like [Glycine max] gi|356512089|ref|XP_003524753.1| chr6 11393332 11393550 +
2 domain predictions
2 GO terms
Lj6g3v1088790.2
n.a. FAD-dependent oxidoreductase family protein [Theobroma cacao] gi|508782371|gb|EOY29627.1| chr6 13085404 13089173 -
2 domain predictions
2 GO terms
Lj6g3v1162950.1
n.a. Flavin-dependent monooxygenase 1 [Theobroma cacao] gi|508782921|gb|EOY30177.1| chr6 14194439 14197472 -
3 domain predictions
2 GO terms
Lj6g3v1211980.1
n.a. PREDICTED: lycopene epsilon cyclase, chloroplastic-like [Glycine max] gi|356530411|ref|XP_003533775.1| chr6 15080662 15085485 -
3 domain predictions
2 GO terms
Lj6g3v1269730.1
n.a. PREDICTED: probable polyamine oxidase 5-like [Glycine max] gi|356556290|ref|XP_003546459.1| chr6 15429994 15433137 +
3 domain predictions
2 GO terms
Lj6g3v1481370.1
n.a. Lysine-specific histone demethylase-like protein [Medicago truncatula] gi|357438195|ref|XP_003589373.1| chr6 17304588 17304869 -
2 domain predictions
2 GO terms
Lj6g3v1966320.1
n.a. Squalene monooxygenase [Theobroma cacao] gi|508705377|gb|EOX97273.1| chr6 22493455 22495888 -
3 domain predictions
2 GO terms
Lj6g3v2083620.1
n.a. PREDICTED: NAD(P)H dehydrogenase B2, mitochondrial-like [Cicer arietinum] gi|502079444|ref|XP_004486261.1| chr6 24587757 24592778 +
4 domain predictions
2 GO terms
Lj6g3v2171780.1
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356521261|ref|XP_003529275.1| chr6 25037897 25061137 -
3 domain predictions
2 GO terms
LotjaGi1g1v0119000.1
n.a. Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial; TAIR: AT2G29990.1 alternative NAD(P)H dehydrogenase 2; Swiss-Prot: sp|O80874|NDA2_ARATH Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial; TrEMBL-Plants: tr|G7JZJ2|G7JZJ2_MEDTR NAD(P)H dehydrogenase B2; Found in the gene: LotjaGi1g1v0119000 LjG1.1_chr1 18817658 18826545 +
2 domain predictions
2 GO terms
LotjaGi1g1v0119000.2
n.a. Internal alternative nad(P)h-ubiquinone oxidoreductase a1, mitochondrial; TAIR: AT1G07180.1 alternative NAD(P)H dehydrogenase 1; Swiss-Prot: sp|Q8GWA1|NDA1_ARATH Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial; TrEMBL-Plants: tr|G7JZJ2|G7JZJ2_MEDTR NAD(P)H dehydrogenase B2; Found in the gene: LotjaGi1g1v0119000 LjG1.1_chr1 18817781 18822253 +
2 domain predictions
2 GO terms
LotjaGi1g1v0119000.3
n.a. Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial; TAIR: AT2G29990.1 alternative NAD(P)H dehydrogenase 2; Swiss-Prot: sp|O80874|NDA2_ARATH Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial; TrEMBL-Plants: tr|G7JZJ2|G7JZJ2_MEDTR NAD(P)H dehydrogenase B2; Found in the gene: LotjaGi1g1v0119000 LjG1.1_chr1 18817781 18822253 +
2 domain predictions
2 GO terms
LotjaGi1g1v0224700.1
n.a. Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr|A0A0B2SWZ8|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700 LjG1.1_chr1 51351414 51364950 -
2 domain predictions
2 GO terms
LotjaGi1g1v0224700.10
n.a. Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr|A0A072VE66|A0A072VE66_MEDTR NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700 LjG1.1_chr1 51351967 51362946 -
2 domain predictions
2 GO terms
LotjaGi1g1v0224700.12
n.a. Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr|A0A0B2SWZ8|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700 LjG1.1_chr1 51351967 51362982 -
2 domain predictions
2 GO terms
LotjaGi1g1v0224700.2
n.a. Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr|A0A072VE66|A0A072VE66_MEDTR NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700 LjG1.1_chr1 51351598 51365085 -
2 domain predictions
2 GO terms
LotjaGi1g1v0224700.3
n.a. Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr|A0A0B2SWZ8|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700 LjG1.1_chr1 51351950 51360344 -
2 domain predictions
2 GO terms
LotjaGi1g1v0224700.4
n.a. Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr|A0A0B2SWZ8|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700 LjG1.1_chr1 51351950 51361264 -
2 domain predictions
2 GO terms
LotjaGi1g1v0224700.5
n.a. Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr|A0A0S3RN10|A0A0S3RN10_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0224700 LjG1.1_chr1 51351950 51362524 -
2 domain predictions
2 GO terms
LotjaGi1g1v0224700.6
n.a. Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr|Q93WZ7|Q93WZ7_PHAVU NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700 LjG1.1_chr1 51351967 51355909 -
2 domain predictions
2 GO terms
LotjaGi1g1v0224700.9
n.a. Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr|A0A072VE66|A0A072VE66_MEDTR NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700 LjG1.1_chr1 51351967 51362946 -
2 domain predictions
2 GO terms
LotjaGi1g1v0608300.1
n.a. Monodehydroascorbate reductase; TAIR: AT3G27820.1 monodehydroascorbate reductase 4; Swiss-Prot: sp|Q9LK94|MDAR4_ARATH Monodehydroascorbate reductase 4, peroxisomal; TrEMBL-Plants: tr|A0A072TXL0|A0A072TXL0_MEDTR Monodehydroascorbate reductase; Found in the gene: LotjaGi1g1v0608300 LjG1.1_chr1 115273073 115278372 -
2 domain predictions
2 GO terms
LotjaGi2g1v0119800.1
n.a. Glutathione reductase; TAIR: AT3G24170.1 glutathione-disulfide reductase; Swiss-Prot: sp|Q43621|GSHRC_PEA Glutathione reductase, cytosolic; TrEMBL-Plants: tr|A0A151S7T2|A0A151S7T2_CAJCA Glutathione reductase, cytosolic; Found in the gene: LotjaGi2g1v0119800 LjG1.1_chr2 44142152 44175188 +
2 domain predictions
2 GO terms
LotjaGi2g1v0119800.2
n.a. Glutathione reductase; TAIR: AT3G24170.1 glutathione-disulfide reductase; Swiss-Prot: sp|Q43621|GSHRC_PEA Glutathione reductase, cytosolic; TrEMBL-Plants: tr|A0A151S7T2|A0A151S7T2_CAJCA Glutathione reductase, cytosolic; Found in the gene: LotjaGi2g1v0119800 LjG1.1_chr2 44142554 44174547 +
2 domain predictions
2 GO terms
LotjaGi2g1v0119800.3
n.a. Glutathione reductase; TAIR: AT3G24170.1 glutathione-disulfide reductase; Swiss-Prot: sp|Q43621|GSHRC_PEA Glutathione reductase, cytosolic; TrEMBL-Plants: tr|I1MNX4|I1MNX4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0119800 LjG1.1_chr2 44142587 44173905 +
2 domain predictions
2 GO terms
LotjaGi2g1v0352600.1
n.a. Thioredoxin reductase; TAIR: AT2G17420.1 NADPH-dependent thioredoxin reductase A; Swiss-Prot: sp|Q39242|TRXB2_ARATH Thioredoxin reductase 2; TrEMBL-Plants: tr|K7LNQ6|K7LNQ6_SOYBN Thioredoxin reductase; Found in the gene: LotjaGi2g1v0352600 LjG1.1_chr2 82865206 82871793 +
2 domain predictions
2 GO terms
LotjaGi3g1v0459400.1
n.a. External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G28220.1 NAD(P)H dehydrogenase B1; Swiss-Prot: sp|M1BYJ7|ENDB1_SOLTU External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial; TrEMBL-Plants: tr|A0A072UUQ5|A0A072UUQ5_MEDTR NAD(P)H dehydrogenase B2; Found in the gene: LotjaGi3g1v0459400 LjG1.1_chr3 87400957 87407254 +
2 domain predictions
2 GO terms
LotjaGi3g1v0459400.2
n.a. External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G21490.1 NAD(P)H dehydrogenase B3; Swiss-Prot: sp|F4JJJ3|NDB3_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial; TrEMBL-Plants: tr|A0A0B2S7G8|A0A0B2S7G8_GLYSO External NADH-ubiquinone oxidoreductase 1, mitochondrial; Found in the gene: LotjaGi3g1v0459400 LjG1.1_chr3 87401480 87413225 +
2 domain predictions
2 GO terms
LotjaGi3g1v0459400.3
n.a. External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G21490.1 NAD(P)H dehydrogenase B3; Swiss-Prot: sp|F4JJJ3|NDB3_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial; TrEMBL-Plants: tr|A0A072UKI3|A0A072UKI3_MEDTR NAD(P)H dehydrogenase B2; Found in the gene: LotjaGi3g1v0459400 LjG1.1_chr3 87407722 87414458 +
2 domain predictions
2 GO terms
LotjaGi3g1v0459400.4
n.a. External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G21490.1 NAD(P)H dehydrogenase B3; Swiss-Prot: sp|F4JJJ3|NDB3_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial; TrEMBL-Plants: tr|A0A072UKI3|A0A072UKI3_MEDTR NAD(P)H dehydrogenase B2; Found in the gene: LotjaGi3g1v0459400 LjG1.1_chr3 87408671 87413225 +
2 domain predictions
2 GO terms
LotjaGi3g1v0472200.1
n.a. Soluble pyridine nucleotide transhydrogenase; TAIR: AT5G22140.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q54NS9|AIFA_DICDI Apoptosis-inducing factor homolog A; TrEMBL-Plants: tr|A0A072UJ51|A0A072UJ51_MEDTR Pyridine nucleotide-disulfide oxidoreductase family protein; Found in the gene: LotjaGi3g1v0472200 LjG1.1_chr3 88925877 88929209 -
2 domain predictions
2 GO terms
LotjaGi3g1v0472300.1
n.a. Apoptosis-inducing factor like A; TAIR: AT3G44190.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q54NS9|AIFA_DICDI Apoptosis-inducing factor homolog A; TrEMBL-Plants: tr|A0A0B2QN98|A0A0B2QN98_GLYSO Apoptosis-inducing factor like A; Found in the gene: LotjaGi3g1v0472300 LjG1.1_chr3 88929753 88933784 -
2 domain predictions
2 GO terms
LotjaGi4g1v0048700.1
n.a. External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G05020.1 NAD(P)H dehydrogenase B2; Swiss-Prot: sp|Q94BV7|NDB2_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial; TrEMBL-Plants: tr|I3SKM1|I3SKM1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0048700 LjG1.1_chr4 5928674 5934551 -
2 domain predictions
2 GO terms
LotjaGi4g1v0050800.1
n.a. Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial; TAIR: AT1G07180.1 alternative NAD(P)H dehydrogenase 1; Swiss-Prot: sp|Q8GWA1|NDA1_ARATH Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial; TrEMBL-Plants: tr|I1KLE3|I1KLE3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0050800 LjG1.1_chr4 6137326 6143230 +
2 domain predictions
2 GO terms