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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0048700 |
| Transcript ID | LotjaGi4g1v0048700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G05020.1 NAD(P)H dehydrogenase B2; Swiss-Prot: sp|Q94BV7|NDB2_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial; TrEMBL-Plants: tr|I3SKM1|I3SKM1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0048700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5928674..5934551) extracted from Lotus japonicus Gifu genome v1.2.
TGGGACCGCCAGCACCTCACAAGTCACAGCCTAGAACACACGCAGCTGTTGTTCATAAGTATTTTGCTTCGTACCTTCCT CCCACATTCTCTCTCTCCCATCTCTCTGGATTCTTATTTTGACCCCACTGACTCCCTCTCTCTTCTTTCTCTCTCTATAA CTACCTCTTCTCCCTCGTTTTCGCACCCGCAGATCTTGCTGTACAAATCTCAAGCAACAATGCGGAATTTCACTTTCTTC GAACAAGCTTTCCGTGACCATCGCTCACAGTTGAAGCTCGTTCTCTTCTGCACCACCGTCAGGTACAACAATCAACACTT GTTGATTTTCGATCCTGTTGCTTGATGATCTTAGTATTGTGAATTTCACACTTCCTTCTATTCAGATCTGTAAATTGCAT TAGAAATTATATTGTGATTCATGTAATTTCCTGTAATTGAAGTTCTGGTGAAATTTTGTGTGTATTCTGAGAGAATAGAG ATCTACGATTCTAGACTTAACAGTTACAATCATGTATTATTTGTGCGATTTGTGTGTGTGTGTGTGTGTCAATGAAGAGG TTGAAGAGTTTTTTGGTTGTGATGCAGTGGTGGTGGACTTTTGGCATACGGTGAGGCTGTTGCTGCATCTGAACCGGAGC AGAAGAAGAAGAAGGTCGTGGTGCTGGGAACTGGCTGGGCAGGGACGACTTTCTTGAGGAATTTGAACAATCCAAGATAT GAGGTTCATGTGGTGTCGCCTCGCAACTATTTTGCCTTCACTCCTTTGCTGCCAAGCGTTACCTGTGGAACTGTGGAAGC GAGAAGCATTGTTGAACCCGTCCGCAACATCTTTAGGAAGGTGAATATGGATATACAGCCTCTTTGGGCTTTGATATTTA TCATTTAGGAAAATATTTATAATTTATATATGATTAACATTCAGGTCTATATGGAGAATTATAATATTAGCATGAGAATA TACCTATCATAAATAAAAAAAAAGGATTACTTTTTAGAAGAGAATATTAGTTATTGTAAATATGATTAATAAAGTGCTAT AGCTTGTATGATAGCATTTTCATTTGCATTGATATAAAAAATTTAAAATAAAATATTAAACTTATTAAATGCAGCAAAGA ATATTCAAAATGTGTGAGATTAGTACGACATGAATGAAGTACAACTAATTATTTTGGGGTGTTTCTCCTTCCTTGATATA ACCTTTTTGAAAAACACAAGAAACTCTTAATTTTGTGGTCCTTCCTTGATATAACCTCTATGAATAACTGAGCACTGTTA ACCGTTAATCTTGAGCTGTTGGGTTGTCCACCAAATTAGTATTTATCTTATGTGTTCAAGGAGAACTATAAGGGGGGCAT GTGCTCACCTATATTTCCTATGGATTAAGAGCTGTGGCATCTCAGTTTTGTATTTTCTGTGGATGAAACTGAGATATGTT CTTATTTCATATGTCATGTTTGGATACAGTGTGACTGAATTTTGCCTGCACTGATGTTTCTGGATAAGTATATGTCCTGA TAAGAATTCCTTTGTGTGAATCATGCTTATGAGATTGTTCCTCGTCCTTGATGACTAGCACATGCTGTTGGATATACATT TTTGTGGGGATCAAATAGCCAGTATAGAAACTTTCTTGCTGTCTTCATTACTAGTGGGTATAATAACTGGACTTTTTCCT TCTTTACATCCAAGCAGAAAAAGGTGAACGCTTATTTCAATGAAGCAGAGTGTGTCAAGATTGACGCAGCAAACAAGAAA ATTTACTGTCGATCTAATATAAACAATAACTTGAACGTTAAAGACGAATTTGTCGTGGACTATGACTACCTAGTCATAGC TGTGGGAGCAAATGTCAACACATTTAACACTCCCGGGGTGGTGGAGAATTGCCATTTCTTGAAGGTAACATCTTTTATCA TTTAGCGCAGCATCAATTATCATATATTTATGTTTCAACTTTCACGGCATTTTGCTTTTACAAGCTTCGTCTGGTTAAGC AATAGTCACGGGAGGAGATGAGCGAGTCAAAATCCAATGATGATCGATGACATCGAATTTGTTTATGTATTTGTGGTTTT GGTTTTTAGTTATCTCATGGACTGGTGTACACTGTACAGGAAGTTGAAGATGCACAGAGGATTAGAAGAACTGTTATTGA CTGCTTTGAAAGAGCAAGTTTGCCGAGTATAAGTGAAGAAGAAAGGAAGAGAATTCTTCATTTCGCTATTGTTGGAGGTG GTCCAACTGGAGTGGAGTTTGCAGCCTCGCTCCATGACTTTGTCAATGAGGATTTGGTCAAGTTATATCCTAAGGCAAAA GATTTAGTCAAAATTACGCTTCTGGAGGCTGGAGATCATATTTTGAGCATGTAAGCATGAAACTCTCATTTTCCTTTCTC TTCATGAGCAACTTGCTTGATGATGCTTTTCCCATTATTTGCATTTATAAGCAGACATTTGAAAGTATTTGATTTAGTCA TGGATTTAATTGCGGGGGGTTTGGTTTTGTTATTTAGAATGCACTTATGACCTCCTATGTTTTTATTCTCATGCTCATTT TCAGGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTCCGAAGAGATGGTATTGATGTGAAAACCGGATCCATG GTTGTGAAGGTATCTGATAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGGGAAATTACTTCAATTCCATATGGAAT GGCCGTCTGGTCAACTGGTATCGGAACTCGTCCATTTATAAGAGATTTTATGCAACAAATTGGTCAGGTGTGTCTTTGGG AAATTTGACATTATTTTTGTTTTGAACTTCTGATCCATAACTCCTTATCATGTTTTATCTTGCACTTTGTATTTATTATT ATTCAGCAAAGTATTTACTCGACATTTTCTGAACAGATTAACAGACGTGCGGTAGCTACTGATGAATGGTTGAGAGTTGA GGGAACCGACAACGTATATGCACTTGGTGATTGTGCTACAATAAACCAGAGAAAAGTCATGGTACCTATTCCTGCTTATG CATCATTTATTTTATTAACATTGATCATTCTTACTAGTATGTATGTTCTCACACGCGTGTGACACAATTGCTATATTCCA TATTTCCATTCTCTTGGACAGACTTCTACCATATTTCCATTTACATTTGGCTTTTATTTTTCCAGTTTCCTTGTTCTATC TTTCATTAGATTTAATGTTGGTGACACAGTAACATACTGACATTGTTATCATGTTAAAATTTCCGTACTGCACTTCTTGC TTAGTAACTTCTGTTCACCCCAGTATTTATGCATTCCTCTGTACCTGCTGAGTGTATATATAGATTAAGGAAATTTTATT CATGATCTGGGATAGTATGAAGTAACACTTATTTGAATTTCATATGTTTTCTTTCTATCTGTTAATTGTTAAATTGGATT TTTTTTATTTTAGGAAGATATTGCGGCAATATTTAAGAAGGCTGACGCAGACAATTCAGGAACCCTTACAGTCAAAGAAC TGCAAGAGGTGTTGCATGACATCTGTGAAAGATACCCTCAGGTGGAGCTATATCTGAAAAGTAAACAGATGAACAATGTT GCTGATCTGTTGAAGGAATCCAAAGGAGATGTTAAAAAGGAATCCATTGAACTGCATATCGAAGAACTAAAAACCGCACT TTCTAATGTGGACTCCCAGATGAAATTTCTTCCTGCTACAGCGCAGGTGCATGTCATGTTATTTTCCTGTTTTATTCTCT TTAATGATATCTATCTGATCATGTTTTCTATTTAGTTAATGACTTTGGCTTTCTGCAAATTTATGCATACCAGGTTGCAT CTCAGCAAGGCACCTACCTTGCCAAGTGTTTTGACAGGATGGAAGAGTGTGAAATAAATCCAGAGGGTCCTCTCAGGTTC AGGGGAGAAGGGCGCCATCGGTTCAAACCCTTTAGGTAACATGATCCCACTAATTAACTAGCTCTTTGCTTTTACCATGT TGGCATAGTGGTGGATGATTCAAGGATTTTTATTAGTTGGCCAATGTTTTCTCATTAGTGTATGGTTGATTGTTCCTCAA GGTACAAGCATTTAGGCCAATTTGCTCCTCTGGGAGGAGAGCAGGCAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATT GGACACAGCACTCAATGGCTGTGGTATTCTATCTATGCAAGGTATGGAATTTCTTTCTTGGTCCGATATTGATGAATGGC ACGACTTTCTTTTAGACGAAAATCGACGAATTAATTTAAATTGAATGATTTCCACTACATATCATGTTTGATTATCTTAC TCTGATTTTAAGAAAGAAAGATGACCTTTCGACTTGGGGCTGTGCTGTCAGGCTTCGTGCCAAAGAGCACTTCTCTTAGC TTAATCATTACCTTAAAAACTGCACGACTTGTTAGGCATTCTGATTAAAAAAGTTATTAAAGCTTTTATTCAATGCTTTG AACAGCAAGCAAGTCAGCTGGCGTACAAGAGCATTGGTAGTAACAGACTGGACAAGACGCTTTCTTTTCGGGAGGGACTC AAGTCAAATATGAAAAGAGTTTTGACAGTTTCCGGAGTCTTGCGGTGGCAACATTGTAGAGCTCATCAAACTTGAATTTA TTTTGATACAGGAAAACTTTTGTTTCAATTTCTTCTTATTCTTTTTGAATAACAGAAGCACACCACCAGCTAGAATGTCA CAGCTGGGATTTGTGGTCATGCTTTGCCACTTTTAACTTCATTGTAATTTTACATACCCCCTTCCCCTTTTCTTTCATGC TTGTGCTATTGGAACTGCGGAATTTGTGGATCTCTGAGTTTTGCAGATCTATATCGGAGGTTCTTGATCAGTGTTGTCAA ATCGCGATCGCGGAAAATCGCGGCGAGGCAAAAATCCGCTATTTCGTTTAGCGGATCGCGTCGCGGGCAAATAGCGGTTA CCGCATAGCGGTTATAATAAGTACAATATTATACAAAAAACAGCTAAAAACAACATAATTTTAACTCAAAGTCTCAAAAC AACATAATTCAAGGCTGTCCAACAGCTCAAAACAGATAACAAAAGTACTTAAAACAACATAATGTTAATGCAAGTATCAA AAGAGCACAATTTAAAGAGATAAGAATACGTAAGAGATAAGTTAAGAGAAAAGGAAGAAGAAACAATGGAAAACAGAGCA TGAGTTTTGAACAGAGAAGAAAACTGTGAAACAAGATATTATAAGTTTAGTAAAGGAAGAAGAAACAATGGAAAACAGAT CATGAGTTTTGAACAAAAATAAAAGAAAAAGAGAAGAGAAGATGACTGTTAAAGGAAGAAGAAACATTGAAAAACAGAGA AGAAAACTGTGAAACAGGGTAAAGGAAGAAGAAACATTGAAGAACAGAGTATAGGTTTTCAACAAAAAACAGAGGAATGA GAGGATGCGGACAAGAGTATGATCTACTCAGCAGAAAGCAGAAACTCTGAGAAGGTTTGCTTGCAAGTTGCAACTGTGCT GTAGAGTGTAGTCTCTGAGAAGTGAGAACCAGAGAGAATTTGAAAGAGAGGAGAGGAGAGTTGAAGCGTTAATATAGAGA ATAGTTATTAGGGAATTAGGGTAATTAATGGGAATTAGCGTTAATAGGAGGTGGCCCATTATATGCTGTTTTTAAAACCC TAAAAACTAGCCAGAAAAACGTTTGAATTCCATGAAATCCGTTATTTCCGTTTCTGGCATAACGCCGCTATGGCGTTCGC GGCCGCGATCGCGATTATCGCGGTGGCCGCTATGTAGCGGCATAACGATTGCGGTGAAGCAAATTCCCGCTACGCTATAG CGGGTAGCGGCCGCTATCGCCGCTATTTAACAACACTG
CDS sequence (LotjaGi4g1v0048700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGAATTTCACTTTCTTCGAACAAGCTTTCCGTGACCATCGCTCACAGTTGAAGCTCGTTCTCTTCTGCACCACCGT CAGTGGTGGTGGACTTTTGGCATACGGTGAGGCTGTTGCTGCATCTGAACCGGAGCAGAAGAAGAAGAAGGTCGTGGTGC TGGGAACTGGCTGGGCAGGGACGACTTTCTTGAGGAATTTGAACAATCCAAGATATGAGGTTCATGTGGTGTCGCCTCGC AACTATTTTGCCTTCACTCCTTTGCTGCCAAGCGTTACCTGTGGAACTGTGGAAGCGAGAAGCATTGTTGAACCCGTCCG CAACATCTTTAGGAAGAAAAAGGTGAACGCTTATTTCAATGAAGCAGAGTGTGTCAAGATTGACGCAGCAAACAAGAAAA TTTACTGTCGATCTAATATAAACAATAACTTGAACGTTAAAGACGAATTTGTCGTGGACTATGACTACCTAGTCATAGCT GTGGGAGCAAATGTCAACACATTTAACACTCCCGGGGTGGTGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCACA GAGGATTAGAAGAACTGTTATTGACTGCTTTGAAAGAGCAAGTTTGCCGAGTATAAGTGAAGAAGAAAGGAAGAGAATTC TTCATTTCGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCCTCGCTCCATGACTTTGTCAATGAGGATTTG GTCAAGTTATATCCTAAGGCAAAAGATTTAGTCAAAATTACGCTTCTGGAGGCTGGAGATCATATTTTGAGCATGTTTGA CAAAAGAATCACTGCTTTTGCTGAAGACAAGTTCCGAAGAGATGGTATTGATGTGAAAACCGGATCCATGGTTGTGAAGG TATCTGATAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGGGAAATTACTTCAATTCCATATGGAATGGCCGTCTGG TCAACTGGTATCGGAACTCGTCCATTTATAAGAGATTTTATGCAACAAATTGGTCAGATTAACAGACGTGCGGTAGCTAC TGATGAATGGTTGAGAGTTGAGGGAACCGACAACGTATATGCACTTGGTGATTGTGCTACAATAAACCAGAGAAAAGTCA TGGAAGATATTGCGGCAATATTTAAGAAGGCTGACGCAGACAATTCAGGAACCCTTACAGTCAAAGAACTGCAAGAGGTG TTGCATGACATCTGTGAAAGATACCCTCAGGTGGAGCTATATCTGAAAAGTAAACAGATGAACAATGTTGCTGATCTGTT GAAGGAATCCAAAGGAGATGTTAAAAAGGAATCCATTGAACTGCATATCGAAGAACTAAAAACCGCACTTTCTAATGTGG ACTCCCAGATGAAATTTCTTCCTGCTACAGCGCAGGTTGCATCTCAGCAAGGCACCTACCTTGCCAAGTGTTTTGACAGG ATGGAAGAGTGTGAAATAAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGGCGCCATCGGTTCAAACCCTTTAGGTA CAAGCATTTAGGCCAATTTGCTCCTCTGGGAGGAGAGCAGGCAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGAC ACAGCACTCAATGGCTGTGGTATTCTATCTATGCAAGCAAGCAAGTCAGCTGGCGTACAAGAGCATTGGTAGTAACAGAC TGGACAAGACGCTTTCTTTTCGGGAGGGACTCAAGTCAAATATGA
Protein sequence (LotjaGi4g1v0048700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNFTFFEQAFRDHRSQLKLVLFCTTVSGGGLLAYGEAVAASEPEQKKKKVVVLGTGWAGTTFLRNLNNPRYEVHVVSPR NYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKKVNAYFNEAECVKIDAANKKIYCRSNINNNLNVKDEFVVDYDYLVIA VGANVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPSISEEERKRILHFAIVGGGPTGVEFAASLHDFVNEDL VKLYPKAKDLVKITLLEAGDHILSMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITSIPYGMAVW STGIGTRPFIRDFMQQIGQINRRAVATDEWLRVEGTDNVYALGDCATINQRKVMEDIAAIFKKADADNSGTLTVKELQEV LHDICERYPQVELYLKSKQMNNVADLLKESKGDVKKESIELHIEELKTALSNVDSQMKFLPATAQVASQQGTYLAKCFDR MEECEINPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQAAAQLPGDWVSIGHSTQWLWYSIYASKQVSWRTRALVVTD WTRRFLFGRDSSQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 5 | 574 | 570 | 0.0 | – | |
| PANTHER | 5 | 574 | 570 | 0.0 | – | |
| Phobius | 20 | 35 | 16 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| PRINTS | 25 | 44 | 20 | 4.6E-9 | – | |
| Phobius | 36 | 40 | 5 | - | – | |
| Gene3D | 39 | 401 | 363 | 1.9E-138 | – | |
| Phobius | 41 | 574 | 534 | - | – | |
| SUPERFAMILY | 48 | 267 | 220 | 6.91E-28 | ||
| Pfam | 49 | 374 | 326 | 1.4E-58 | ||
| PRINTS | 154 | 172 | 19 | 4.6E-9 | – | |
| SUPERFAMILY | 209 | 369 | 161 | 3.96E-19 | ||
| PRINTS | 215 | 233 | 19 | 4.6E-9 | – | |
| PRINTS | 344 | 366 | 23 | 4.6E-9 | – | |
| SUPERFAMILY | 365 | 459 | 95 | 3.35E-7 | ||
| ProSiteProfiles | 372 | 407 | 36 | 13.035 | ||
| SMART | 376 | 404 | 29 | 0.0014 | ||
| ProSitePatterns | 385 | 397 | 13 | - | ||
| Gene3D | 416 | 574 | 159 | 2.9E-29 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0048700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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