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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2171780 |
| Transcript ID | Lj6g3v2171780.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: squalene monooxygenase-like [Glycine max] gi|356521261|ref|XP_003529275.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 27 | 27 | – | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| TMHMM | 5 | 27 | 23 | – | – | |
| Phobius | 6 | 28 | 23 | – | – | |
| PANTHER | 19 | 525 | 507 | 0 | – | |
| PANTHER | 19 | 525 | 507 | 0 | – | |
| Phobius | 29 | 457 | 429 | – | – | |
| Gene3D | 57 | 235 | 179 | 9.20E-26 | ||
| SUPERFAMILY | 60 | 232 | 173 | 1.38E-43 | ||
| PRINTS | 62 | 84 | 23 | 1.30E-09 | – | |
| Pfam | 65 | 91 | 27 | 2.20E-05 | – | |
| PRINTS | 211 | 226 | 16 | 1.30E-09 | – | |
| Pfam | 212 | 484 | 273 | 1.20E-118 | ||
| SUPERFAMILY | 326 | 436 | 111 | 1.38E-43 | ||
| Gene3D | 337 | 370 | 34 | 9.20E-26 | ||
| PRINTS | 339 | 354 | 16 | 1.30E-09 | – | |
| PRINTS | 354 | 370 | 17 | 1.30E-09 | – | |
| TMHMM | 455 | 477 | 23 | – | – | |
| Phobius | 458 | 477 | 20 | – | – | |
| Phobius | 478 | 482 | 5 | – | – | |
| Phobius | 483 | 501 | 19 | – | – | |
| TMHMM | 484 | 501 | 18 | – | – | |
| Phobius | 502 | 527 | 26 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Squalene monooxygenase activity | Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj6g3v2171780.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2171780.1, powered by CORGI.
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