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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027417
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 4269 results. Now displaying 8 of 86 with 50 rows per page. This search has taken 6.733s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0252699.1
n.a. PREDICTED: pleiotropic drug resistance protein 2-like [Cicer arietinum] gi|502174313|ref|XP_004515482.1| chr0 131109876 131121879 +
3 domain predictions
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Lj0g3v0253299.1
n.a. PREDICTED: probable adenylate kinase 1, chloroplastic-like [Cicer arietinum] gi|502121818|ref|XP_004497451.1| chr0 131535461 131539026 +
2 domain predictions
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Lj0g3v0254329.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357494411|ref|XP_003617494.1| chr0 132048903 132062520 +
3 domain predictions
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Lj0g3v0254329.2
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357494411|ref|XP_003617494.1| chr0 132048903 132052054 +
3 domain predictions
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Lj0g3v0254349.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357494411|ref|XP_003617494.1| chr0 132058195 132060524 +
3 domain predictions
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Lj0g3v0254369.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357494411|ref|XP_003617494.1| chr0 132063443 132066704 +
3 domain predictions
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Lj0g3v0255589.1
n.a. PREDICTED: adenylate kinase B-like [Glycine max] gi|356513991|ref|XP_003525691.1| chr0 132774068 132778229 +
3 domain predictions
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Lj0g3v0255699.1
n.a. DNA-binding protein SMUBP-2 [Medicago truncatula] gi|357509763|ref|XP_003625170.1| chr0 132804004 132806135 +
3 domain predictions
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Lj0g3v0255889.1
n.a. NBS-LRR resistance-like protein [Medicago truncatula] gi|357521387|ref|XP_003630982.1| chr0 132878474 132884068 +
3 domain predictions
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Lj0g3v0255929.1
n.a. PREDICTED: ABC transporter G family member 31-like [Cicer arietinum] gi|502129273|ref|XP_004500246.1| chr0 132911384 132914623 -
3 domain predictions
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Lj0g3v0256549.1
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 1-like isoform X3 [Cicer arietinum] gi|502131277|ref|XP_004500933.1| chr0 133179365 133186105 -
2 domain predictions
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Lj0g3v0256549.3
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 1-like isoform X3 [Cicer arietinum] gi|502131277|ref|XP_004500933.1| chr0 133179365 133186105 -
2 domain predictions
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Lj0g3v0257079.1
n.a. PREDICTED: DNA repair protein RAD51 homolog 2-like isoform X1 [Cicer arietinum] gi|502082384|ref|XP_004487150.1| chr0 133450367 133457037 +
3 domain predictions
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Lj0g3v0257079.2
n.a. PREDICTED: DNA repair protein RAD51 homolog 2-like isoform X1 [Cicer arietinum] gi|502082384|ref|XP_004487150.1| chr0 133450367 133457037 +
3 domain predictions
 –
Lj0g3v0257079.3
n.a. PREDICTED: DNA repair protein RAD51 homolog 2-like isoform X1 [Cicer arietinum] gi|502082384|ref|XP_004487150.1| chr0 133450367 133457037 +
3 domain predictions
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Lj0g3v0258049.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 133969077 133974426 +
3 domain predictions
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Lj0g3v0258479.1
n.a. PREDICTED: ABC transporter G family member 7-like [Glycine max] gi|356536210|ref|XP_003536632.1| chr0 134192185 134195112 +
3 domain predictions
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Lj0g3v0258839.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine max] gi|356504849|ref|XP_003521207.1| chr0 134391357 134397770 -
3 domain predictions
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Lj0g3v0259009.2
n.a. Tir-nbs-lrr resistance protein [Medicago truncatula] gi|357468521|ref|XP_003604545.1| chr0 134553318 134556859 +
3 domain predictions
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Lj0g3v0259589.1
n.a. RecName: Full=Ras-related protein Rab11A; Flags: Precursorgi|1370142|emb|CAA98177.1| RAB11A [Lotus japonicus] gi|3024500|sp|Q40191.1|RB11A_LOTJA chr0 134915789 134919296 +
3 domain predictions
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Lj0g3v0262799.1
n.a. NBS-LRR type disease resistance protein [Medicago truncatula] gi|357458621|ref|XP_003599591.1| chr0 136306291 136307962 +
3 domain predictions
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Lj0g3v0263339.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 136542223 136546874 +
3 domain predictions
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Lj0g3v0263339.2
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 136544328 136546874 +
3 domain predictions
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Lj0g3v0264299.1
n.a. PREDICTED: GTP-binding protein ERG-like [Cicer arietinum] gi|502166492|ref|XP_004513909.1| chr0 137008616 137013565 -
3 domain predictions
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Lj0g3v0265449.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine max] gi|356502333|ref|XP_003519974.1| chr0 137540343 137542930 -
3 domain predictions
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Lj0g3v0267779.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr0 138752065 138765617 -
2 domain predictions
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Lj0g3v0268419.1
n.a. TMV resistance protein N [Medicago truncatula] gi|357504435|ref|XP_003622506.1| chr0 138940781 138945800 +
3 domain predictions
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Lj0g3v0269349.1
n.a. chromatin remodeling complex subunit [Populus trichocarpa] gi|224122872|ref|XP_002318937.1| chr0 139537849 139549334 +
3 domain predictions
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Lj0g3v0269369.1
n.a. PREDICTED: probable disease resistance protein At5g66900-like [Glycine max] gi|356495456|ref|XP_003516593.1| chr0 139560832 139565410 -
3 domain predictions
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Lj0g3v0270919.1
n.a. PREDICTED: elongation factor G, chloroplastic-like [Glycine max] gi|356563292|ref|XP_003549898.1| chr0 140309870 140314217 +
3 domain predictions
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Lj0g3v0271489.1
n.a. White-brown-complex ABC transporter family [Medicago truncatula] gi|357476291|ref|XP_003608431.1| chr0 140630055 140631033 +
2 domain predictions
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Lj0g3v0271549.1
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr0 140673021 140679894 -
3 domain predictions
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Lj0g3v0271919.1
n.a. Ras-related protein Rab7 [Medicago truncatula] gi|357468399|ref|XP_003604484.1| chr0 140920029 140922821 -
3 domain predictions
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Lj0g3v0271929.1
n.a. n.a. chr0 140920140 140922929 -
3 domain predictions
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Lj0g3v0272489.1
n.a. PREDICTED: ABC transporter G family member 21-like [Glycine max] gi|356502704|ref|XP_003520157.1| chr0 141196409 141204096 +
3 domain predictions
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Lj0g3v0273129.1
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 1-like isoform X3 [Cicer arietinum] gi|502131277|ref|XP_004500933.1| chr0 141533737 141546509 -
2 domain predictions
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Lj0g3v0273259.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356570335|ref|XP_003553345.1| chr0 141600345 141607745 -
3 domain predictions
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Lj0g3v0273259.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356570335|ref|XP_003553345.1| chr0 141600345 141607745 -
3 domain predictions
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Lj0g3v0273279.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Glycine max] gi|356520426|ref|XP_003528863.1| chr0 141625346 141640119 +
3 domain predictions
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Lj0g3v0273379.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Cicer arietinum] gi|502162893|ref|XP_004512653.1| chr0 141690230 141699140 +
3 domain predictions
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Lj0g3v0273499.1
n.a. PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Cicer arietinum] gi|502082664|ref|XP_004487236.1| chr0 141773150 141774339 +
3 domain predictions
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Lj0g3v0273649.1
n.a. PREDICTED: cell division control protein 6 homolog [Cicer arietinum] gi|502129264|ref|XP_004500243.1| chr0 141850761 141856471 -
3 domain predictions
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Lj0g3v0273739.2
n.a. FTSH protease 12 isoform 2 [Theobroma cacao] gi|508722244|gb|EOY14141.1| chr0 141886606 141895230 -
3 domain predictions
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Lj0g3v0275419.1
n.a. NBS resistance protein-like protein [Medicago truncatula] gi|357469163|ref|XP_003604866.1| chr0 142856976 142868107 -
3 domain predictions
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Lj0g3v0276849.1
n.a. NBS-containing resistance-like protein [Medicago truncatula] gi|357460983|ref|XP_003600773.1| chr0 143699929 143702518 -
2 domain predictions
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Lj0g3v0278019.1
n.a. PREDICTED: dynamin-related protein 1E-like [Cicer arietinum] gi|502152578|ref|XP_004508991.1| chr0 144382298 144383320 -
2 domain predictions
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Lj0g3v0278299.1
n.a. PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine max] gi|356499332|ref|XP_003518495.1| chr0 144505272 144510676 +
3 domain predictions
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Lj0g3v0281089.1
n.a. DNA repair and recombination protein PIF1 [Medicago truncatula] gi|357506355|ref|XP_003623466.1| chr0 145730805 145731920 -
3 domain predictions
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Lj0g3v0281329.1
n.a. PREDICTED: GTP-binding protein TypA/BipA homolog [Cicer arietinum] gi|502143941|ref|XP_004505523.1| chr0 145851275 145866261 +
3 domain predictions
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Lj0g3v0281509.1
n.a. disease resistance protein [Glycine max] gi|351720930|ref|NP_001235657.1| chr0 145932835 145936508 +
3 domain predictions
 –