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Lj0g3v0271549.1

Overview

Field Value
Gene ID Lj0g3v0271549
Transcript ID Lj0g3v0271549.1
Lotus japonicus genome version MG20 v3.0
Description Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 32 32 – –
PANTHER
PTHR18934
29 905 877 0 –
PANTHER
PTHR18934:SF140
29 905 877 0 –
Coils
Coil
70 90 21 – –
SUPERFAMILY
SSF52540
134 646 513 3.56E-69
IPR027417
SMART
SM00487
137 322 186 9.00E-25
IPR014001
Gene3D
G3DSA:3.40.50.300
139 297 159 4.40E-38
IPR027417
Pfam
PF00270
147 300 154 3.30E-06
IPR011545
ProSiteProfiles
PS51192
149 313 165 15.866
IPR014001
CDD
cd00046
156 294 139 4.76E-19 –
ProSitePatterns
PS00690
255 264 10 –
IPR002464
CDD
cd00079
338 475 138 1.98E-14 –
ProSiteProfiles
PS51194
342 508 167 16.833
IPR001650
Gene3D
G3DSA:3.40.50.300
344 485 142 8.00E-17
IPR027417
Pfam
PF00271
349 467 119 6.10E-17
IPR001650
SMART
SM00490
370 468 99 3.50E-20
IPR001650
SMART
SM00847
528 624 97 9.70E-11
IPR007502
Pfam
PF04408
529 623 95 6.50E-09
IPR007502
Pfam
PF07717
691 766 76 4.10E-08
IPR011709
Gene3D
G3DSA:3.30.40.10
1381 1454 74 8.30E-07
IPR013083
SUPERFAMILY
SSF57850
1394 1459 66 1.91E-07 –
ProSiteProfiles
PS50089
1395 1437 43 8.89
IPR001841
CDD
cd00162
1395 1422 28 1.87E-04 –
ProSitePatterns
PS00518
1411 1420 10 –
IPR017907
SMART
SM00647
1463 1527 65 1.20E-10
IPR002867
Pfam
PF01485
1474 1527 54 4.10E-08
IPR002867
SUPERFAMILY
SSF57850
1474 1533 60 1.15E-06 –
SMART
SM00647
1528 1592 65 0.031
IPR002867
SUPERFAMILY
SSF57850
1549 1597 49 2.30E-09 –
ProSitePatterns
PS00028
1579 1600 22 –
IPR007087

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 30

Expression data

Expression pattern

Expression pattern of Lj0g3v0271549.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0271549.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.