Domain Predictions — View

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PF17123

Source: Pfam

Description

RING-like zinc finger

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0198409.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING-H2 finger protein ATL1L [Medicago truncatula] gi\|357519845\|ref\|XP_003630211.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF17123 PS50089 PTHR14155 PTHR14155:SF106 SSF57850 TMhelix TRANSMEMBRANE cd00162	13
Lj1g3v1290510.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING-H2 finger protein ATL1L [Medicago truncatula] gi\|357519845\|ref\|XP_003630211.1\|	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF17123 PS50089 PTHR14155 PTHR14155:SF106 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF57850 SignalP-noTM_EUK cd00162	15
Lj1g3v1290530.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING finger protein [Medicago truncatula] gi\|357519817\|ref\|XP_003630197.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF17123 PTHR14155 PTHR14155:SF106 SSF57850 TMhelix TRANSMEMBRANE cd00162	12
Lj1g3v2597980.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING-H2 finger protein ATL5F, partial [Medicago truncatula] gi\|357519893\|ref\|XP_003630235.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF17123 PTHR14155 PTHR14155:SF106 SSF57850 TMhelix TRANSMEMBRANE cd00162	12
Lj1g3v4047310.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi\|357472157\|ref\|XP_003606363.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 PF00092 PF14624 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF61 SM00184 SM00327 SSF53300 SSF57850 cd00162 cd01466 mobidb-lite	20
Lj1g3v4944910.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Cicer arietinum] gi\|502113388\|ref\|XP_004494634.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF17123 PTHR14155 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF57850 SignalP-TM_EUK SignalP-TM_GRAM_NEGATIVE SignalP-TM_GRAM_POSITIVE TMhelix TRANSMEMBRANE cd00162 mobidb-lite	19
Lj2g3v1468250.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein [Medicago truncatula] gi\|163889361\|gb\|ABY48131.1\|	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 PF00092 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF59 SM00184 SM00327 SSF53300 SSF57850 cd00162 mobidb-lite	18
Lj3g3v3131850.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H4 [Medicago truncatula] gi\|357466819\|ref\|XP_003603694.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 TRANSMEMBRANE cd00162 cd01466 mobidb-lite	21
Lj3g3v3131860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H4 [Medicago truncatula] gi\|357466819\|ref\|XP_003603694.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd00162 cd01466 mobidb-lite	18
LotjaGi1g1v0014100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT5G55970.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|A0A0B2QR19\|A0A0B2QR19_GLYSO E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0014100	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF17123 PS50089 PTHR46225 PTHR46225:SF1 SM00184 SSF57850 TMhelix TRANSMEMBRANE	13
LotjaGi1g1v0414100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger ring-type protein; TAIR: AT5G49665.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|G7J445\|G7J445_MEDTR Zinc finger (C3HC4-type RING finger) family protein; Found in the gene: LotjaGi1g1v0414100	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	19
LotjaGi1g1v0414100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger ring-type protein; TAIR: AT5G49665.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|G7J445\|G7J445_MEDTR Zinc finger (C3HC4-type RING finger) family protein; Found in the gene: LotjaGi1g1v0414100	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	19
LotjaGi2g1v0331700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT2G22680.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|P97280\|ITIH3_MESAU Inter-alpha-trypsin inhibitor heavy chain H3; TrEMBL-Plants: tr\|A0A0L9UXU8\|A0A0L9UXU8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0331700	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF00092 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF59 SM00184 SM00327 SSF53300 SSF57850 cd16448 mobidb-lite	19
LotjaGi3g1v0165000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT5G60710.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|A0A0B2PPB7\|A0A0B2PPB7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0165000	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 IPR036465 PF00092 PF14624 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF111 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	21
LotjaGi3g1v0165000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT5G60710.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|A0A0B2PPB7\|A0A0B2PPB7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0165000	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 IPR036465 PF00092 PF14624 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF111 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	21
LotjaGi3g1v0489100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT5G60710.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|A0A0S3SCP0\|A0A0S3SCP0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0489100	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 IPR036465 PF00092 PF14624 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF111 SM00184 SM00327 SSF53300 SSF57850 cd16448 mobidb-lite	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.25