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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002999
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 27 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.426s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v1387020.2
n.a. PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] gi|356516458|ref|XP_003526911.1| chr1 17099660 17106362 +
4 domain predictions
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Lj1g3v1819810.1
n.a. PREDICTED: micronuclear linker histone polyprotein-like [Cicer arietinum] gi|502133501|ref|XP_004501787.1| chr1 22154804 22173490 -
2 domain predictions
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Lj1g3v1819810.2
n.a. PREDICTED: micronuclear linker histone polyprotein-like [Cicer arietinum] gi|502133501|ref|XP_004501787.1| chr1 22154804 22160055 -
2 domain predictions
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Lj4g3v0013170.1
n.a. PREDICTED: survival of motor neuron-related-splicing factor 30-like [Cicer arietinum] gi|502126585|ref|XP_004499363.1| chr4 160903 166842 +
3 domain predictions
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Lj4g3v0013170.2
n.a. PREDICTED: survival of motor neuron-related-splicing factor 30-like [Cicer arietinum] gi|502126585|ref|XP_004499363.1| chr4 160903 166842 +
3 domain predictions
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Lj5g3v0511000.2
n.a. PREDICTED: micronuclear linker histone polyprotein-like isoform X3 [Cicer arietinum] gi|502125079|ref|XP_004498790.1| chr5 5391416 5399926 -
2 domain predictions
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Lj5g3v0511000.3
n.a. PREDICTED: micronuclear linker histone polyprotein-like isoform X3 [Cicer arietinum] gi|502125079|ref|XP_004498790.1| chr5 5391416 5416964 -
2 domain predictions
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LotjaGi1g1v0331200.1
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331200 LjG1.1_chr1 78766409 78774024 +
4 domain predictions
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LotjaGi1g1v0331200.2
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331200 LjG1.1_chr1 78767049 78772755 +
4 domain predictions
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LotjaGi1g1v0331400.1
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400 LjG1.1_chr1 78782372 78789363 +
4 domain predictions
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LotjaGi1g1v0331400.2
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400 LjG1.1_chr1 78782372 78803287 +
4 domain predictions
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LotjaGi1g1v0331400.3
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400 LjG1.1_chr1 78782415 78802509 +
4 domain predictions
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LotjaGi1g1v0331400.4
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400 LjG1.1_chr1 78782440 78802540 +
4 domain predictions
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LotjaGi1g1v0331400.5
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400 LjG1.1_chr1 78782440 78802540 +
4 domain predictions
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LotjaGi1g1v0331400.6
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400 LjG1.1_chr1 78782457 78802333 +
4 domain predictions
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LotjaGi1g1v0331400.7
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400 LjG1.1_chr1 78782457 78802333 +
4 domain predictions
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LotjaGi1g1v0331400.8
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KBV2|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400 LjG1.1_chr1 78795314 78803287 +
4 domain predictions
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LotjaGi1g1v0378300_LC.1
n.a. Sister chromatid cohesion protein PDS5 like B-B; TAIR: AT4G31880.2 transcriptional regulator; Swiss-Prot: sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B; TrEMBL-Plants: tr|A0A0B2R5L9|A0A0B2R5L9_GLYSO Sister chromatid cohesion protein PDS5 like B-B; Found in the gene: LotjaGi1g1v0378300_LC LjG1.1_chr1 85799238 85809096 -
2 domain predictions
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LotjaGi1g1v0378300_LC.2
n.a. Sister chromatid cohesion protein PDS5 like B-B; TAIR: AT4G31880.2 transcriptional regulator; Swiss-Prot: sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B; TrEMBL-Plants: tr|A0A0B2R5L9|A0A0B2R5L9_GLYSO Sister chromatid cohesion protein PDS5 like B-B; Found in the gene: LotjaGi1g1v0378300_LC LjG1.1_chr1 85799238 85809096 -
2 domain predictions
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LotjaGi1g1v0378300_LC.3
n.a. Sister chromatid cohesion protein PDS5 like B-B; TAIR: AT4G31880.2 transcriptional regulator; Swiss-Prot: sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B; TrEMBL-Plants: tr|A0A0B2R5L9|A0A0B2R5L9_GLYSO Sister chromatid cohesion protein PDS5 like B-B; Found in the gene: LotjaGi1g1v0378300_LC LjG1.1_chr1 85799717 85809080 -
2 domain predictions
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LotjaGi1g1v0378300_LC.4
n.a. Sister chromatid cohesion protein PDS5 like B-B; TAIR: AT4G31880.2 transcriptional regulator; Swiss-Prot: sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B; TrEMBL-Plants: tr|A0A0B2R5L9|A0A0B2R5L9_GLYSO Sister chromatid cohesion protein PDS5 like B-B; Found in the gene: LotjaGi1g1v0378300_LC LjG1.1_chr1 85799782 85809028 -
2 domain predictions
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LotjaGi1g1v0760200.1
n.a. DNA mismatch repair protein MutS; TAIR: AT4G02070.1 MUTS homolog 6; Swiss-Prot: sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6; TrEMBL-Plants: tr|A0A151RYF4|A0A151RYF4_CAJCA DNA mismatch repair protein Msh6-1; Found in the gene: LotjaGi1g1v0760200 LjG1.1_chr1 133338082 133347110 +
2 domain predictions
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LotjaGi4g1v0001700.1
n.a. Survival of motor neuron-related-splicing factor 30; TAIR: AT2G02570.1 nucleic acid binding/RNA binding protein; Swiss-Prot: sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing factor 30; TrEMBL-Plants: tr|I3SL72|I3SL72_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0001700 LjG1.1_chr4 344459 349509 +
3 domain predictions
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LotjaGi4g1v0001700.2
n.a. Survival of motor neuron-related-splicing factor 30; TAIR: AT2G02570.1 nucleic acid binding/RNA binding protein; Swiss-Prot: sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing factor 30; TrEMBL-Plants: tr|I3SL72|I3SL72_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0001700 LjG1.1_chr4 344523 349049 +
3 domain predictions
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LotjaGi4g1v0416800.1
n.a. Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp|Q8VZG7|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr|I1KP14|I1KP14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0416800 LjG1.1_chr4 79251717 79257588 +
4 domain predictions
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LotjaGi5g1v0054300.1
n.a. Sister chromatid cohesion protein PDS5 like B-B; TAIR: AT4G31880.2 transcriptional regulator; Swiss-Prot: sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B; TrEMBL-Plants: tr|A0A151RT93|A0A151RT93_CAJCA Sister chromatid cohesion protein PDS5 isogeny B-B; Found in the gene: LotjaGi5g1v0054300 LjG1.1_chr5 9241078 9250865 -
2 domain predictions
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LotjaGi5g1v0054300.2
n.a. Sister chromatid cohesion protein PDS5 like B-B; TAIR: AT4G31880.1 transcriptional regulator; Swiss-Prot: sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B; TrEMBL-Plants: tr|A0A151RT93|A0A151RT93_CAJCA Sister chromatid cohesion protein PDS5 isogeny B-B; Found in the gene: LotjaGi5g1v0054300 LjG1.1_chr5 9241078 9250865 -
2 domain predictions
 –