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LotjaGi4g1v0001700.2

Overview

Field Value
Gene ID LotjaGi4g1v0001700
Transcript ID LotjaGi4g1v0001700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Survival of motor neuron-related-splicing factor 30; TAIR: AT2G02570.1 nucleic acid binding/RNA binding protein; Swiss-Prot: sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing factor 30; TrEMBL-Plants: tr|I3SL72|I3SL72_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0001700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:344523..349049) extracted from Lotus japonicus Gifu genome v1.2.

TTTCAACAAAAACTGTGTCTGTGTGTCGAAGAGAGAGAGAGAGAGAGGTTACTTAGGGTTATCGAAGAAGAAGAAGAAAG ATGCAAGGGCAAGGCAGTGATGAAGTTAGCATAGAAGAGCTCGCCTCTAACCTATCCACCTACAAAGACCAGCTCTACCA GGTAGGTAATTAGGGTTTCTTCTTCTTCAATCATGATCACAATTTCATATTCATAATCAATTTCTTCAGGTCAGACAACT TTTAAATGACGACCCTTCAAATTCAGAGTATGTCGACATGGAAAGGGAGCTCAGGGAGGTGAAATTTCTCCTTCTTTCGA TTATACTCCTTTAGTTTAATTTCCCCTTTCCTATCAAAATATTCTCAATTGATTACTTATTCATTCATCTCATCACATTC TTATTCTTACGTAGCATACAGACCATGTATACATTTTATTTTAATAATTCAACTGTTAGAAATATAGTATGAAACCATTT TTGTGACCTTTACCCAAAAGCTTGGGATAACTGCTTGTTTGTTTCACATGGTATTAGACCTTCTATCACTAAGTGCTCTT GAGTTTCAGCACATGGTAGGTGGGTCGTGCATTGCCAGCGCTTCAACCTCATGTGGGCTTTGCGTGAGGGGATGTTTAGA AATATAATATAAAACCATTTATGTGGCATTTACCCAAAGGCGATAATTGGTTCTTTGACGACTCTAGTGGCTCATTTATT CTATTTAGTGTTGAAAACGTGGGTGAGGGTAGAATTTTATCTGGACGGCCGTTAGTCTAATGATTCGAATTGCAGATCAT GAGGACCATGGCAAAAAAAGCAAAATGAATGAATGTTAGATCTATGTACCAAAATAAAAGATTAGATAAACTCATCAGAA TGCACATTACTTCTATCTTGGTGGTTCTGTGCAGGTTGCTCTGTATCGTGATGTCCAGCATGCTTTCTCCCTCTCACCTG ATATGAGATGTTCACACTGATCGTCTAAGTTAGAATTTTGACATTCTTGGTTTATGATGTACAAATTTCGGAAACATATT TGTTTTACTGAACTGGAATGTGGTCTAAAATTATGTGTTACAGGTGATTGCTTTGACGGAAGAGCTCCTTGCAACTGCAA AGCAAAATGAAATGTCAAGTTCAAATGCTGTTCCCAATGCTGATACATCTCCAAGTTTGTCTAATCCTATGGAGAATAAA GGAGTACGTACTTGGCATTCTGATTTGACTTTATTATTAAGTAGATAATTGAACCCTGCAGATGCAGGCACTTGTATGAC CTATTTTGGTTTTTAATATTTATCCCTGGCATACTGCATTTTGCACCACCATAGAACTGCTTATTCAAAATTGACTTAAG TGCTTGCCTTGATGATCGATGAAATTACAATCTGGCAGAAGTTGTGGATGAAACAATTGAATATAATCTCTATTGATTTG ACTGCAATGGTTTTTCTGGTGATCATTAATAATTCCTTATGTTATTCCACTTTTAGGAGTTAGATAGCAGCTATGATCAT GAACAGAAATTTCCGGTTGGCTCCAAAATTCAAGCAGTTTGGAGTGATGATGGGGAGTGGTATGTGAAGCAAATATTTCT ATTTGCTTATCTTTGTATTTTGTTTTCCATTTCATTTACCGATGTATTCATGTTTGATTAGTTGTATTATGAATGTTCAG GTATGAAGCAACAATTGAGGCTCATACACCAAATGGTTATTATGTTCGCTATGAAAATTGGGGTAATAGAGAAGAGGTAT GGTTTCTAAAACTACTTGATGCGTGCTCAGAGTTTGTTTGAAAGAACTTATTTGGGCTTGTCTTATAGCATAAGACTTGA GCAAGTGTTTGTTTTGAGCTTCTCAGATAAGTTTTTGAATAAGCGCTTATACTTACCTATAAGATCTTTTTCTGTCAATT ATCATAAAAGATTAAGAATAAGGGGTTGTGTTATAAATACTTGATGACATAATTGTTTAAGTAAGCAATTTACCTTTACC CAAAGTCCCAAAAGCACCCGCAATGATAATCCTTGTCATGTGATGTATTATGTTGTATCTGCGTAAAAATTTCCCTCTAA ATTCTTCTTTACTGCATGATTTTGAGGTAACTTGCGTGGTACTGTAGTTGGATAGATAGGAGGAGGGATTAAGTTCTAAT GGAAGTCCTATGTCTTGTTTGGTGGATCTAAATTTAAGATTGGCACAGTGCTCATCTATACTATTTGTTATATACCATTT AACTCGAAGGAGTCCTCTGTTGCTACTTGCTATTTTACCATAAAACAACTTTGCTGTATTATCTGCTTGCTAATCTTGGA AACGTAGAAAAGGTATTTTGAGGGAAGAATTGTGAATTTTTTGCTATGTTTGATCACCAACCACCCCTTAATCTGCTGTT GAAATAATGCATTGGTTATATATTATTTATCATTTATACAGAGCGAAGTCGCCACTTGTTATTGTACCATAATACAATTA ATTAAGTTTTATCTCACACAAGCATATGAAGAAAGGGATTTTGAGCAAGAAATTTTTGTTGAAATAACATAATTCGAATA ATGTGTCATTGCATCTTCTATCTTTTCTGTACATGATTAATAATCACTAAATTATGTTACTTTTAATCGTATGCTATCAT GTTTATTCAAGTATTTTCTGGTGCTTTGTTTTTTAGAAAGGACATAGCGGAATCAATTTATCTCAGGTTACATGCAAGTA AAGAACTTTCAATTGTATACTGTGTGCCATCATGTGTGGATGAAAATTCTCTGTAGTTCATTGTGTAATTGGAAAATGGA ATAGTAGAGTATTTTGTACTGGAGATGATTAATTTCACTGTGCTGCTCATATATTGTATTGAGAAAACATTGTCCATAAA TTAATAGGCTAGTAGTCATAACATAAAATCTTAAGCCTAACTTTTGGTTGTTGATTAAGAGACCAATAATTTTTTTTTTA TATCTCTCGGTAATTCTCATGTACTGATGGTGGTTGCTTATTACAGGTAGATCCTGCCAATATAAGGCTAGTTCAAGAAG GTATTGTTGATGCTTTGTTAGAAGCTGAGCGAGTTGCTGAAGCTACCAAGCAAGCTATCAAACGTAAAATTTCTCAAGCA GCATCTGTTGATTTCCAGTCTCGAAGTCTACCTGCTAAGCTTCGAATAGAGCCTGATGACCCTGAGGATGTGGTGAGATG TTGCAGCAAATTTTCATTCTTTGTTTTTTTACCTTTGGAATTCATTGACTTGAGTAGTTATTTTTTTATATTCATGAAGT GCTTGAATTTGCTATCTATATATCCTTGGGGTAGTCTCATTCTGTGGGTTACTTAATGATCTGTATTTCTGTAACCGATG ATGATTGTCAGTTTCATCCTAAATTGATTCTGTTTTCTGAAGTTTTTCTGCCAGATAATTAGGATGCCATTGATGACAAG TTTGCTCACTCAATGATTGCAGAAAGCTGCCAAACGTAAGAAAATACACGCCTTCAAGTCAAAGATGAGATTTGAGCAAC TTGAAGTCACTCAAAATAAGCGACAAAATGCTTGGCAGCAGTTTCAATCAACCAAAGGAAAGACTAAGAAGGTACCTTTT TCAATTTTGCTATATTTCATCGTCTCATTTATGTTATCATTAAGAAGTTTCACAGATTATCTACTCACATGTACCTTGGT GCGTATTGTTTTATTTTCTTGTAAGAATCTTATTTAATTTTAATTTTATATTCATTTTAAAGTGGATAATGGATGTGAAC TAGAGCCTCATTGCTAAACATCCAAACATAGAAGTGGAGGTGAGCTCATATAGTGAAGTAAAGAATTTACATTTTATTGT ACTATCTTGAGGTGAATGTGTCGGAAGATGTTAAAAATTTAAATTTCATTAATTTATTAATTTGAGTGCAAGAACCAGCT TGAATTTACCTTAGGAGAGAAATATTGTCGCAGTCTAAAAGCCCTTTGTAAGTTAAAGTCACTTGAAAATTGAAATAGAA TTCATTGTTTGAGATTTTTTTTACCATCAAGGAAAAAGATTTTTGTAACATCAACCCTGGGTAGAAGGCCAGATCTTTGA AATTCCTGTTATGTTTCATTTCCAGTTCACAATTCACCGATCTGCGTTCTCTATACATTTAAATTCTTTAATATGCTCAA ATTGTTACTTTTTGATGTGTAAAATATATTGGCTTTGCTTACAGATTGGTTTCTTCTCGGGAAGAAAGCGGGAGAGTATT TTTAAATCTCCTGATGATCCTCAAGGAAAGGTTGGTGTGACTGGAAGTGGGAAAGGTTTGACCGAATTCCAGAAAAGAGA AAAACATTTTCATCTCAAGGATGGTTCAGTTGAGAATGATGAGTAGGTTATGCCCAGTTGAGAATGATGATTAGGTTATG AAGGTGTTATCCTTGTTGGATGTAAAATGTGCAAACCATTCACTGTAGAGGTTCATTAATGCCAAACCAAAACAATTGAA TTAAGGGCCAAGAACAAAAATTAATTAATAGAGACTTGAATTAAAAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0001700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAAGGGAGCTCAGGGAGGTGATTGCTTTGACGGAAGAGCTCCTTGCAACTGCAAAGCAAAATGAAATGTCAAGTTC AAATGCTGTTCCCAATGCTGATACATCTCCAAGTTTGTCTAATCCTATGGAGAATAAAGGAGAGTTAGATAGCAGCTATG ATCATGAACAGAAATTTCCGGTTGGCTCCAAAATTCAAGCAGTTTGGAGTGATGATGGGGAGTGGTATGAAGCAACAATT GAGGCTCATACACCAAATGGTTATTATGTTCGCTATGAAAATTGGGGTAATAGAGAAGAGGTAGATCCTGCCAATATAAG GCTAGTTCAAGAAGGTATTGTTGATGCTTTGTTAGAAGCTGAGCGAGTTGCTGAAGCTACCAAGCAAGCTATCAAACGTA AAATTTCTCAAGCAGCATCTGTTGATTTCCAGTCTCGAAGTCTACCTGCTAAGCTTCGAATAGAGCCTGATGACCCTGAG GATGTGAAAGCTGCCAAACGTAAGAAAATACACGCCTTCAAGTCAAAGATGAGATTTGAGCAACTTGAAGTCACTCAAAA TAAGCGACAAAATGCTTGGCAGCAGTTTCAATCAACCAAAGGAAAGACTAAGAAGATTGGTTTCTTCTCGGGAAGAAAGC GGGAGAGTATTTTTAAATCTCCTGATGATCCTCAAGGAAAGGTTGGTGTGACTGGAAGTGGGAAAGGTTTGACCGAATTC CAGAAAAGAGAAAAACATTTTCATCTCAAGGATGGTTCAGTTGAGAATGATGAGTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0001700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MERELREVIALTEELLATAKQNEMSSSNAVPNADTSPSLSNPMENKGELDSSYDHEQKFPVGSKIQAVWSDDGEWYEATI EAHTPNGYYVRYENWGNREEVDPANIRLVQEGIVDALLEAERVAEATKQAIKRKISQAASVDFQSRSLPAKLRIEPDDPE DVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQSTKGKTKKIGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTEF QKREKHFHLKDGSVENDE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13681:SF26
1 251 251 5.7E-86 –
PANTHER
PTHR13681
1 251 251 5.7E-86 –
MobiDBLite
mobidb-lite
20 47 28 - –
MobiDBLite
mobidb-lite
20 56 37 - –
Pfam
PF06003
41 125 85 5.3E-6
IPR010304
Gene3D
G3DSA:2.30.30.140
52 112 61 1.1E-11 –
SMART
SM00333
57 114 58 1.6E-13
IPR002999
SUPERFAMILY
SSF63748
58 109 52 1.13E-10 –
ProSiteProfiles
PS50304
58 116 59 14.492
IPR002999
CDD
cd04508
62 107 46 7.10104E-12 –
MobiDBLite
mobidb-lite
214 258 45 - –
MobiDBLite
mobidb-lite
238 258 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006397
Biological process MRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0001700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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