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LotjaGi4g1v0001700.1

Overview

Field Value
Gene ID LotjaGi4g1v0001700
Transcript ID LotjaGi4g1v0001700.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Survival of motor neuron-related-splicing factor 30; TAIR: AT2G02570.1 nucleic acid binding/RNA binding protein; Swiss-Prot: sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing factor 30; TrEMBL-Plants: tr|I3SL72|I3SL72_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0001700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:344459..349509) extracted from Lotus japonicus Gifu genome v1.2.

CCCGGCCCAAGAGATGATATAAGGAATGTCGCGACTCGCAAAGTGTTGTTGTTGTTTCTATCTTTTTCAACAAAAACTGT GTCTGTGTGTCGAAGAGAGAGAGAGAGAGAGGTTACTTAGGGTTATCGAAGAAGAAGAAGAAAGATGCAAGGGCAAGGCA GTGATGAAGTTAGCATAGAAGAGCTCGCCTCTAACCTATCCACCTACAAAGACCAGCTCTACCAGGTAGGTAATTAGGGT TTCTTCTTCTTCAATCATGATCACAATTTCATATTCATAATCAATTTCTTCAGGTCAGACAACTTTTAAATGACGACCCT TCAAATTCAGAGTATGTCGACATGGAAAGGGAGCTCAGGGAGGTGAAATTTCTCCTTCTTTCGATTATACTCCTTTAGTT TAATTTCCCCTTTCCTATCAAAATATTCTCAATTGATTACTTATTCATTCATCTCATCACATTCTTATTCTTACGTAGCA TACAGACCATGTATACATTTTATTTTAATAATTCAACTGTTAGAAATATAGTATGAAACCATTTTTGTGACCTTTACCCA AAAGCTTGGGATAACTGCTTGTTTGTTTCACATGGTATTAGACCTTCTATCACTAAGTGCTCTTGAGTTTCAGCACATGG TAGGTGGGTCGTGCATTGCCAGCGCTTCAACCTCATGTGGGCTTTGCGTGAGGGGATGTTTAGAAATATAATATAAAACC ATTTATGTGGCATTTACCCAAAGGCGATAATTGGTTCTTTGACGACTCTAGTGGCTCATTTATTCTATTTAGTGTTGAAA ACGTGGGTGAGGGTAGAATTTTATCTGGACGGCCGTTAGTCTAATGATTCGAATTGCAGATCATGAGGACCATGGCAAAA AAAGCAAAATGAATGAATGTTAGATCTATGTACCAAAATAAAAGATTAGATAAACTCATCAGAATGCACATTACTTCTAT CTTGGTGGTTCTGTGCAGGTTGCTCTGTATCGTGATGTCCAGCATGCTTTCTCCCTCTCACCTGATATGAGATGTTCACA CTGATCGTCTAAGTTAGAATTTTGACATTCTTGGTTTATGATGTACAAATTTCGGAAACATATTTGTTTTACTGAACTGG AATGTGGTCTAAAATTATGTGTTACAGGTGATTGCTTTGACGGAAGAGCTCCTTGCAACTGCAAAGCAAAATGAAATGTC AAGTTCAAATGCTGTTCCCAATGCTGATACATCTCCAAGTTTGTCTAATCCTATGGAGAATAAAGGAGTACGTACTTGGC ATTCTGATTTGACTTTATTATTAAGTAGATAATTGAACCCTGCAGATGCAGGCACTTGTATGACCTATTTTGGTTTTTAA TATTTATCCCTGGCATACTGCATTTTGCACCACCATAGAACTGCTTATTCAAAATTGACTTAAGTGCTTGCCTTGATGAT CGATGAAATTACAATCTGGCAGAAGTTGTGGATGAAACAATTGAATATAATCTCTATTGATTTGACTGCAATGGTTTTTC TGGTGATCATTAATAATTCCTTATGTTATTCCACTTTTAGGAGTTAGATAGCAGCTATGATCATGAACAGAAATTTCCGG TTGGCTCCAAAATTCAAGCAGTTTGGAGTGATGATGGGGAGTGGTATGTGAAGCAAATATTTCTATTTGCTTATCTTTGT ATTTTGTTTTCCATTTCATTTACCGATGTATTCATGTTTGATTAGTTGTATTATGAATGTTCAGGTATGAAGCAACAATT GAGGCTCATACACCAAATGGTTATTATGTTCGCTATGAAAATTGGGGTAATAGAGAAGAGGTATGGTTTCTAAAACTACT TGATGCGTGCTCAGAGTTTGTTTGAAAGAACTTATTTGGGCTTGTCTTATAGCATAAGACTTGAGCAAGTGTTTGTTTTG AGCTTCTCAGATAAGTTTTTGAATAAGCGCTTATACTTACCTATAAGATCTTTTTCTGTCAATTATCATAAAAGATTAAG AATAAGGGGTTGTGTTATAAATACTTGATGACATAATTGTTTAAGTAAGCAATTTACCTTTACCCAAAGTCCCAAAAGCA CCCGCAATGATAATCCTTGTCATGTGATGTATTATGTTGTATCTGCGTAAAAATTTCCCTCTAAATTCTTCTTTACTGCA TGATTTTGAGGTAACTTGCGTGGTACTGTAGTTGGATAGATAGGAGGAGGGATTAAGTTCTAATGGAAGTCCTATGTCTT GTTTGGTGGATCTAAATTTAAGATTGGCACAGTGCTCATCTATACTATTTGTTATATACCATTTAACTCGAAGGAGTCCT CTGTTGCTACTTGCTATTTTACCATAAAACAACTTTGCTGTATTATCTGCTTGCTAATCTTGGAAACGTAGAAAAGGTAT TTTGAGGGAAGAATTGTGAATTTTTTGCTATGTTTGATCACCAACCACCCCTTAATCTGCTGTTGAAATAATGCATTGGT TATATATTATTTATCATTTATACAGAGCGAAGTCGCCACTTGTTATTGTACCATAATACAATTAATTAAGTTTTATCTCA CACAAGCATATGAAGAAAGGGATTTTGAGCAAGAAATTTTTGTTGAAATAACATAATTCGAATAATGTGTCATTGCATCT TCTATCTTTTCTGTACATGATTAATAATCACTAAATTATGTTACTTTTAATCGTATGCTATCATGTTTATTCAAGTATTT TCTGGTGCTTTGTTTTTTAGAAAGGACATAGCGGAATCAATTTATCTCAGGTTACATGCAAGTAAAGAACTTTCAATTGT ATACTGTGTGCCATCATGTGTGGATGAAAATTCTCTGTAGTTCATTGTGTAATTGGAAAATGGAATAGTAGAGTATTTTG TACTGGAGATGATTAATTTCACTGTGCTGCTCATATATTGTATTGAGAAAACATTGTCCATAAATTAATAGGCTAGTAGT CATAACATAAAATCTTAAGCCTAACTTTTGGTTGTTGATTAAGAGACCAATAATTTTTTTTTTATATCTCTCGGTAATTC TCATGTACTGATGGTGGTTGCTTATTACAGGTAGATCCTGCCAATATAAGGCTAGTTCAAGAAGGTATTGTTGATGCTTT GTTAGAAGCTGAGCGAGTTGCTGAAGCTACCAAGCAAGCTATCAAACGTAAAATTTCTCAAGCAGCATCTGTTGATTTCC AGTCTCGAAGTCTACCTGCTAAGCTTCGAATAGAGCCTGATGACCCTGAGGATGTGGTGAGATGTTGCAGCAAATTTTCA TTCTTTGTTTTTTTACCTTTGGAATTCATTGACTTGAGTAGTTATTTTTTTATATTCATGAAGTGCTTGAATTTGCTATC TATATATCCTTGGGGTAGTCTCATTCTGTGGGTTACTTAATGATCTGTATTTCTGTAACCGATGATGATTGTCAGTTTCA TCCTAAATTGATTCTGTTTTCTGAAGTTTTTCTGCCAGATAATTAGGATGCCATTGATGACAAGTTTGCTCACTCAATGA TTGCAGAAAGCTGCCAAACGTAAGAAAATACACGCCTTCAAGTCAAAGATGAGATTTGAGCAACTTGAAGTCACTCAAAA TAAGCGACAAAATGCTTGGCAGCAGTTTCAATCAACCAAAGGAAAGACTAAGAAGGTACCTTTTTCAATTTTGCTATATT TCATCGTCTCATTTATGTTATCATTAAGAAGTTTCACAGATTATCTACTCACATGTACCTTGGTGCGTATTGTTTTATTT TCTTGTAAGAATCTTATTTAATTTTAATTTTATATTCATTTTAAAGTGGATAATGGATGTGAACTAGAGCCTCATTGCTA AACATCCAAACATAGAAGTGGAGGTGAGCTCATATAGTGAAGTAAAGAATTTACATTTTATTGTACTATCTTGAGGTGAA TGTGTCGGAAGATGTTAAAAATTTAAATTTCATTAATTTATTAATTTGAGTGCAAGAACCAGCTTGAATTTACCTTAGGA GAGAAATATTGTCGCAGTCTAAAAGCCCTTTGTAAGTTAAAGTCACTTGAAAATTGAAATAGAATTCATTGTTTGAGATT TTTTTTACCATCAAGGAAAAAGATTTTTGTAACATCAACCCTGGGTAGAAGGCCAGATCTTTGAAATTCCTGTTATGTTT CATTTCCAGTTCACAATTCACCGATCTGCGTTCTCTATACATTTAAATTCTTTAATATGCTCAAATTGTTACTTTTTGAT GTGTAAAATATATTGGCTTTGCTTACAGATTGGTTTCTTCTCGGGAAGAAAGCGGGAGAGTATTTTTAAATCTCCTGATG ATCCTCAAGGAAAGGTTGGTGTGACTGGAAGTGGGAAAGGTTTGACCGAATTCCAGAAAAGAGAAAAACATTTTCATCTC AAGGATGGTTCAGTTGAGAATGATGAGTAGGTTATGCCCAGTTGAGAATGATGATTAGGTTATGAAGGTGTTATCCTTGT TGGATGTAAAATGTGCAAACCATTCACTGTAGAGGTTCATTAATGCCAAACCAAAACAATTGAATTAAGGGCCAAGAACA AAAATTAATTAATAGAGACTTGAATTAAAATGTTAATTTTACATAGATGAAAAAAATTAATCCTATTTTGTTTGTTCATC TTAATTTATTATGATGCTGTAAATTTTGCTGGCTTTTATGGCTCAGGTTGAGAGTTTCCTGTAGAGGTAAGTTCTCTTGA GTGAGATTTGATGTTGCAAGATTTTAGCTTAGATTCTCGAAGGACACCTCACAAAAGTTTCCCCGTAATATGACTCACTT TGCATTATGTATAAATTAATTTGTTTCTTTAGATGATAAAAAATCATAGTTTCCTATTGAGTAGAATCTGATGTGGCAAA ATTTCAGCTTGGATTCTTGAAGGACATATGGCAAAAGTTTCCATGGAATAGGGCTCCCATTGAATTATGTATAGATAATA CTCCCTCCAATTTTTTTAACCGGTAAAAAGAAAAAAAAAACACGCACACACACATTAAGAAGTGTAATTTTTTTTATAAG CGAGTAGTGTA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0001700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAGGGCAAGGCAGTGATGAAGTTAGCATAGAAGAGCTCGCCTCTAACCTATCCACCTACAAAGACCAGCTCTACCA GGTCAGACAACTTTTAAATGACGACCCTTCAAATTCAGAGTATGTCGACATGGAAAGGGAGCTCAGGGAGGTGATTGCTT TGACGGAAGAGCTCCTTGCAACTGCAAAGCAAAATGAAATGTCAAGTTCAAATGCTGTTCCCAATGCTGATACATCTCCA AGTTTGTCTAATCCTATGGAGAATAAAGGAGAGTTAGATAGCAGCTATGATCATGAACAGAAATTTCCGGTTGGCTCCAA AATTCAAGCAGTTTGGAGTGATGATGGGGAGTGGTATGAAGCAACAATTGAGGCTCATACACCAAATGGTTATTATGTTC GCTATGAAAATTGGGGTAATAGAGAAGAGGTAGATCCTGCCAATATAAGGCTAGTTCAAGAAGGTATTGTTGATGCTTTG TTAGAAGCTGAGCGAGTTGCTGAAGCTACCAAGCAAGCTATCAAACGTAAAATTTCTCAAGCAGCATCTGTTGATTTCCA GTCTCGAAGTCTACCTGCTAAGCTTCGAATAGAGCCTGATGACCCTGAGGATGTGAAAGCTGCCAAACGTAAGAAAATAC ACGCCTTCAAGTCAAAGATGAGATTTGAGCAACTTGAAGTCACTCAAAATAAGCGACAAAATGCTTGGCAGCAGTTTCAA TCAACCAAAGGAAAGACTAAGAAGATTGGTTTCTTCTCGGGAAGAAAGCGGGAGAGTATTTTTAAATCTCCTGATGATCC TCAAGGAAAGGTTGGTGTGACTGGAAGTGGGAAAGGTTTGACCGAATTCCAGAAAAGAGAAAAACATTTTCATCTCAAGG ATGGTTCAGTTGAGAATGATGAGTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0001700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQGQGSDEVSIEELASNLSTYKDQLYQVRQLLNDDPSNSEYVDMERELREVIALTEELLATAKQNEMSSSNAVPNADTSP SLSNPMENKGELDSSYDHEQKFPVGSKIQAVWSDDGEWYEATIEAHTPNGYYVRYENWGNREEVDPANIRLVQEGIVDAL LEAERVAEATKQAIKRKISQAASVDFQSRSLPAKLRIEPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQ STKGKTKKIGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTEFQKREKHFHLKDGSVENDE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13681:SF26
7 294 288 1.5E-103 –
PANTHER
PTHR13681
7 294 288 1.5E-103 –
MobiDBLite
mobidb-lite
64 97 34 - –
MobiDBLite
mobidb-lite
64 90 27 - –
Pfam
PF06003
86 168 83 1.1E-5
IPR010304
Gene3D
G3DSA:2.30.30.140
95 155 61 1.4E-11 –
SMART
SM00333
100 157 58 1.6E-13
IPR002999
SUPERFAMILY
SSF63748
101 152 52 1.5E-10 –
ProSiteProfiles
PS50304
101 159 59 14.492
IPR002999
CDD
cd04508
105 150 46 1.00648E-11 –
MobiDBLite
mobidb-lite
257 301 45 - –
MobiDBLite
mobidb-lite
281 301 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006397
Biological process MRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0001700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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