Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj1g3v1387020 |
| Transcript ID | Lj1g3v1387020.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] gi|356516458|ref|XP_003526911.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 979 | 979 | 0 | ||
| SUPERFAMILY | 9 | 151 | 143 | 1.03E-29 | ||
| SMART | 10 | 151 | 142 | 1.70E-27 | ||
| ProSiteProfiles | 10 | 151 | 142 | 26.673 | ||
| PANTHER | 11 | 234 | 224 | 0 | ||
| PANTHER | 11 | 234 | 224 | 0 | – | |
| Gene3D | 19 | 151 | 133 | 1.50E-30 | ||
| Pfam | 43 | 151 | 109 | 5.60E-10 | ||
| SUPERFAMILY | 183 | 232 | 50 | 1.05E-24 | ||
| Gene3D | 183 | 230 | 48 | 2.70E-31 | ||
| ProSiteProfiles | 186 | 364 | 179 | 29.56 | ||
| SMART | 186 | 364 | 179 | 1.10E-27 | ||
| MobiDBLite | 237 | 256 | 20 | – | – | |
| Pfam | 267 | 363 | 97 | 1.00E-12 | ||
| PANTHER | 268 | 485 | 218 | 0 | ||
| PANTHER | 268 | 485 | 218 | 0 | – | |
| Gene3D | 271 | 369 | 99 | 2.70E-31 | ||
| SUPERFAMILY | 273 | 368 | 96 | 1.05E-24 | ||
| Coils | 340 | 360 | 21 | – | – | |
| SUPERFAMILY | 375 | 561 | 187 | 1.31E-22 | ||
| SMART | 378 | 557 | 180 | 8.20E-14 | ||
| ProSiteProfiles | 378 | 557 | 180 | 24.149 | ||
| Gene3D | 387 | 569 | 183 | 2.20E-37 | ||
| PANTHER | 508 | 981 | 474 | 0 | – | |
| PANTHER | 508 | 981 | 474 | 0 | ||
| SUPERFAMILY | 581 | 714 | 134 | 1.57E-27 | ||
| Gene3D | 581 | 714 | 134 | 8.10E-32 | ||
| ProSiteProfiles | 587 | 714 | 128 | 25.793 | ||
| SMART | 587 | 714 | 128 | 2.00E-29 | ||
| Pfam | 616 | 714 | 99 | 3.20E-14 | ||
| Pfam | 732 | 855 | 124 | 1.10E-20 | ||
| ProSiteProfiles | 733 | 968 | 236 | 18.28 | ||
| Gene3D | 757 | 835 | 79 | 3.30E-18 | – | |
| SUPERFAMILY | 757 | 852 | 96 | 2.71E-15 | – | |
| SMART | 779 | 843 | 65 | 7.40E-08 | ||
| ProSiteProfiles | 780 | 845 | 66 | 16.023 | ||
| CDD | 784 | 837 | 54 | 5.58E-10 | – | |
| SUPERFAMILY | 794 | 974 | 181 | 1.83E-18 | ||
| Gene3D | 836 | 977 | 142 | 2.70E-22 | ||
| Pfam | 862 | 967 | 106 | 1.20E-08 | ||
| MobiDBLite | 936 | 989 | 54 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | RISC complex | A ribonucleoprotein complex that contains members of the Argonaute family of proteins, small interfering RNAs (siRNAs) or microRNAs (miRNAs), and miRNA or siRNA-complementary mRNAs, in addition to a number of accessory factors. The RISC complex is involved in posttranscriptional repression of gene expression through downregulation of translation or induction of mRNA degradation. | ||
| Biological process | Gene silencing by RNA | Any process in which RNA molecules inactivate expression of target genes. |
Expression pattern of Lj1g3v1387020.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj1g3v1387020.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.