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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003126
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 6 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.644s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0047059.1
n.a. PHD finger-related protein [Medicago truncatula] gi|357481401|ref|XP_003610986.1| chr0 15695869 15700569 -
4 domain predictions
1 GO term
Lj1g3v3445320.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max] gi|356523153|ref|XP_003530206.1| chr1 39989438 40003778 -
4 domain predictions
1 GO term
LotjaGi1g1v0519700.1
n.a. Auxin transport protein BIG; TAIR: AT3G02260.2 auxin transport protein (BIG); Swiss-Prot: sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG; TrEMBL-Plants: tr|G7KRX3|G7KRX3_MEDTR Auxin transporter BIG; Found in the gene: LotjaGi1g1v0519700 LjG1.1_chr1 104341659 104364313 +
3 domain predictions
1 GO term
LotjaGi1g1v0519700.2
n.a. Auxin transport protein BIG; TAIR: AT3G02260.4 auxin transport protein (BIG); Swiss-Prot: sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG; TrEMBL-Plants: tr|G7KRX3|G7KRX3_MEDTR Auxin transporter BIG; Found in the gene: LotjaGi1g1v0519700 LjG1.1_chr1 104343604 104363223 +
3 domain predictions
1 GO term
LotjaGi1g1v0580400.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT5G02310.1 proteolysis 6; Swiss-Prot: sp|F4KCC2|PRT6_ARATH E3 ubiquitin-protein ligase PRT6; TrEMBL-Plants: tr|I1KJZ0|I1KJZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0580400 LjG1.1_chr1 111972028 112003189 +
4 domain predictions
1 GO term
LotjaGi2g1v0441800.1
n.a. PHD finger family protein; TAIR: AT4G23860.1 PHD finger protein-like protein; Swiss-Prot: sp|Q8N806|UBR7_HUMAN Putative E3 ubiquitin-protein ligase UBR7; TrEMBL-Plants: tr|I1JAE1|I1JAE1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0441800 LjG1.1_chr2 93790002 93794986 -
4 domain predictions
1 GO term