Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PS51157

Source: ProSiteProfiles

Description

Zinc finger UBR-type profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
Lj0g3v0047059.1
– PHD finger-related protein [Medicago truncatula] gi|357481401|ref|XP_003610986.1|
Domains
12
Lj1g3v3445320.1
– PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max] gi|356523153|ref|XP_003530206.1|
Domains
14
LotjaGi1g1v0519700.1
– Auxin transport protein BIG; TAIR: AT3G02260.2 auxin transport protein (BIG); Swiss-Prot: sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG; TrEMBL-Plants: tr|G7KRX3|G7KRX3_MEDTR Auxin transporter BIG; Found in the gene: LotjaGi1g1v0519700
Domains
23
LotjaGi1g1v0519700.2
– Auxin transport protein BIG; TAIR: AT3G02260.4 auxin transport protein (BIG); Swiss-Prot: sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG; TrEMBL-Plants: tr|G7KRX3|G7KRX3_MEDTR Auxin transporter BIG; Found in the gene: LotjaGi1g1v0519700
Domains
21
LotjaGi1g1v0580400.1
– E3 ubiquitin-protein ligase; TAIR: AT5G02310.1 proteolysis 6; Swiss-Prot: sp|F4KCC2|PRT6_ARATH E3 ubiquitin-protein ligase PRT6; TrEMBL-Plants: tr|I1KJZ0|I1KJZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0580400
Domains
16
LotjaGi2g1v0441800.1
– PHD finger family protein; TAIR: AT4G23860.1 PHD finger protein-like protein; Swiss-Prot: sp|Q8N806|UBR7_HUMAN Putative E3 ubiquitin-protein ligase UBR7; TrEMBL-Plants: tr|I1JAE1|I1JAE1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0441800
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 16.67