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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3445320 |
| Transcript ID | Lj1g3v3445320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max] gi|356523153|ref|XP_003530206.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 477 | 477 | 0 | – | |
| Phobius | 1 | 1726 | 1726 | – | – | |
| PANTHER | 1 | 477 | 477 | 0 | – | |
| SMART | 113 | 182 | 70 | 3.80E-20 | ||
| ProSiteProfiles | 113 | 183 | 71 | 10.699 | ||
| Pfam | 115 | 181 | 67 | 2.70E-19 | ||
| MobiDBLite | 472 | 492 | 21 | – | – | |
| PANTHER | 540 | 575 | 36 | 0 | – | |
| PANTHER | 540 | 575 | 36 | 0 | – | |
| PANTHER | 673 | 1282 | 610 | 0 | – | |
| PANTHER | 673 | 1282 | 610 | 0 | – | |
| SUPERFAMILY | 859 | 945 | 87 | 4.62E-05 | ||
| MobiDBLite | 1122 | 1147 | 26 | – | – | |
| MobiDBLite | 1165 | 1189 | 25 | – | – | |
| MobiDBLite | 1382 | 1409 | 28 | – | – | |
| PANTHER | 1408 | 1662 | 255 | 0 | – | |
| PANTHER | 1408 | 1662 | 255 | 0 | – | |
| Gene3D | 1418 | 1473 | 56 | 1.30E-05 | ||
| PANTHER | 1693 | 1986 | 294 | 0 | – | |
| PANTHER | 1693 | 1986 | 294 | 0 | – | |
| Phobius | 1727 | 1747 | 21 | – | – | |
| Phobius | 1748 | 1986 | 239 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v3445320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3445320.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.