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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0441800 |
| Transcript ID | LotjaGi2g1v0441800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger family protein; TAIR: AT4G23860.1 PHD finger protein-like protein; Swiss-Prot: sp|Q8N806|UBR7_HUMAN Putative E3 ubiquitin-protein ligase UBR7; TrEMBL-Plants: tr|I1JAE1|I1JAE1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0441800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93790002..93794986) extracted from Lotus japonicus Gifu genome v1.2.
AAAAACCTGTGAAGGATCGTCGAATCGTGTTATTAAGCTTTTCTATGAAGATTTACTAGTGTAGTAGCTTGTTGTGTCTC TTTCTTCTCATGCAACCCAAAAATGGTGGTTAATTAAAGATTACTAATCTCTAGATTGGAGGGAATAATGTAATTTGGCA TTTGATCTACCAATATACCCAGTGGTCATGGTGCATCTCATACCATATATGGCGGGAAAATGTCCGTATGGTCCTCACTC CGCCTTACCCCAATATAAAACCCTAATTGCTCTCCACTACATATATACTCCAAACTCCCTCTTTCTCTCTCGCTCCTCCG TCACCGCCGTGTCTGATTGGGCTACTTCAGCCGTATTCGCTTCGCTCTCACGTGAACCTTCACAATTTCTGGTGCGATTG TGGTTTTTGCGTTCTAATTTTCTATCATTTCATATTTGATTTCATGGAATCTAGGGTTTCTCAATCCACGAAATCTATGT AGCTTTTTTCGCAGGAGTTTGTGCAATCATGTGATTTTGTCTGTGCTTTGTGTTTTAGGAACGGATCGTGAAACTCCGAA GCCAGAAATCGGAGTTTTCCTAGCGGAAATGGACCCTGCCTTTGCCGATGAAGTTGATGAAGCTGAGCAGGCTATTACCA TCGGCGAGTACATTGAGGAAGAAGAGGAACGGGAGCTGGTTAGTCATTTTCTGCATTATTCTGATTTGCTTTGCATTTCG TTTGGTTGTTAAATCGATTTGTGTTACGAGTATGAATTGCACATCATATTGTTTTACTCTTGACATTGTTACTGCAAAGG CTTGTACTATGAATTTGGATTATCTGCGTTTGAACTTGTAGTGCTATCGAGAGGACTTGTGGTAACCTGACACTTGCATG TTAGGGTTTGGGATATAACTTGTGGCTCTCTTTCAAATCTGAAGAATATAAGCAAATCCAGTTTTTAAGCACATGCTCAA TCTTGCGCTTGATATTTGAGAAATCTCACCAGTCTGGTGTGTTTGTGTGTTCTGTCTATTGTATTGCTCACAAAATCGTA AATTATGTTGCGAGTAAATCTTAAACATTCTATTTTCCTGTTTTTTACTTGTTTGTGCAAATCACCTGCTGATTTAGAGG ACAAGAAATATGAATTGTGGGTAGGCATTAAAGATGATAAATAAGCATGTTTGACATCAAATGAAATTGTTTTGCCATTA TCTATTATTCTTTTATGAACCACTGACGTGGGGTATAGATGGTATTTGACAGCCTTGCTATAGAACTGTGGGTGGATTTC GTGCATTTTTTTTCCATAGCTAGAAAATGGTCCTCAAAATACCTGAAACTTCAATAATTGGTTTACTCATGCTTGGATAG TCTTCGATTATCTGATAGTTTTTGAACCTTTCTGCATTTGTTTCCAGTTTCTTACCTCCATCTTGTCAAGCATATTTTGA GTATTAGGGCAAGGCAACAAATTGTGCTTGTGAAGTATGCTACAATTTTGATGCATGATTTCATCTAAATCGAAATGGTT TTCCTTCTTGTGGACTTTGTTTTATTTGAAAGAGGCTGCATGGTGACGTTCAAGCTTTACAAGCAATTGGTATTAGGCGT AATCTATTCTGTTTAATGATGATTACATTGTTATGTTTGGTTCTATTTTATCAGAGTCTTCTTATTTGAAAATGTTGTCA CTTCAGCAATTTCCTTATTCGTGTTTTAATTTATTCAAATTCTAATTGTAGGTAGCCGATTTAATTTTGGGGGGTGATGC TGGCAAGGAGTGTACCTATAACAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTTACCTGCACCCCAGATGGGA ATGCTGGAGTTTGCACAGCTTGCTCATTGTCTTGCCATGATGGTCATCAGGTAGTTCTTTTCTTATGGCTTTAGAATTTT GGCTTGCACTAATATAGTTTATTATTTGTGTTTAGTGTTTATTACTTTACTTTTTGATAGTGAAATACAAGGGTAATGCA TGTGGTGCTAAATCATATATTTTCAAAGCATATTACCTGTAATTGGGTATTTTATAATGAAAGAAATTGAATCTTGATGT CTTTTTTTTTTTAAATTTTTCAATTGGATAATTGTCTTATATAATTTTCACTGGTGAATCTGAGGCGTTCCTGTAAGATT CTGTTATGGATTTGGCTTGTACTCTAATGCTTTGTTTGAGTGGAGAGAGATAAGAAAGAGAGAGTTAGAGGGAGGATGGG GATGAACATGTGGTTGGTGAAGGGAGGAGAGGGGGACAAAGAAGAGTTTGTGTGGGCCCCACGTGCTTTTTCAACTCTTC TCAAAATGAAGAGAGATTGTACGGTCCAGAACTTTGGCTCTCCTTTTCCATGTTTGTACATATATTTTCAATTGTTTAGT TTTTTTTATTAGGATAAAATTGTATTTTACTACTACTTTCCACTATCTTTCTCTTCTATCTCTCTTCACTTTTTATCATA CCAAACAACCTCTAAATCTACTCTATTTCTCACATATTTCTCTCTACTCAACTTCTCTCTTCTCTACTCTCTCTTCTTTA TCTCTCTTTTCTACCAAACGAAGCGTCAATATCTGGTCTATTGTCTGTCCATTGTCCCTGATTGCATGCTTGTGATAGCT ACCTCCATCATGCACTTTCTTTTGCTTAAGACTAAATTATGGTTAGGTTTGATACTTATCTACATTAGTGGTAACCAGGG TTTTTTTAATGTCATGATCTCAAGATTGTTTGTGTAGATTGTACGTGTTGGTGCTGAACTAATACACTTTATGTGGAATA GGTTTCCTTTTATTTGCTAAAATAACCTATATTACTTGAATATAAATCCAGTTAAAATTTGTTTGCATAATTAATATCAA TGCTAATAACTTACTGTTTTATTATTGATTTGTTGCAAATAAGGTTGTGGAACTATGGACAAAAAGAAACTTCAGGTGTG ATTGTGGGAATTCAAAGTTTGGTGAATTTTACTGCAAGATTTTCCCAAGTAAAGATGTGGAGAATTCTGAGAATGCATAC AATCACAACTTCAAAGGTTTGTATTGCACTTGTGGCCTCCCTTATCCAGGTCTAGATGTTGAAGAACAAGTAGAGATGAT ACAGTGCTGTCTGTGTGAGGACTGGTTTCATGTGGAGCATCTTGGTCTCGAGTCTTCTGATGAGGTTGGTCTTGTTACAT TGCGCTCTTTTACATCAGTATTGACTTGAGTAAGATTTTTATGCAGTTTTGGGAAATGAAAAATCTACACCCTTGTTATG AATAGAGTTGCCAGTCCCAGGTTTTATGTTAATTCTACTGTCAGATCATGCTGGAAAATCCATACATTTCTGAAACTAAG GAATGTCTGAGGATATAAACTTGCATGTTATTTTTAATGATGAATGTCCTACTGAACTAATAACTTGAAGTTTCAAACAA CCATATGCTACATGCTTCTGTTGCTTGAAACAATATGACTTAAAGACTATAAATGTCACTGGACACCTTTTAGAGTGGAA GACTTGCGCTTGAGAGAAATTACAAATTAAAACCTAAATAATTATATCGACTGATAAGAAGTTTTCTTGCAATTGATTGT GAACTTGTGGTCTTGCTTTAACTCTCGATGTGTCATTCTTCTCATATCTGAATAATTCTGAAAATATTGATGGTTGTTTG TTCCCTTTTCCTGATCTTTTTCTTTCCTAGCCCTGTATATATAGTAAATTACAATCCCAAACAAAGCTTGATACAAGTTT ACACTAATTGTGTTTCTGGTATGTTGGTCTGAAAGAAAAAGGTACTGAGTTATTTATCGCTCATGTTTCGCCATTGTTCC TGGTATGCTTACAGATTCCCAGAGATGATGAAGAAAAAGTGCCATTTTGTGAGGAATTCATGTGTAAGGCATGCTCTGAA GTATGTTCTTTTCTAAAACTATATCCTGAAGGAATATTGGCAACAAGAAGGAAGCCAGAGGCACCTGTCCAAGTTAGCAA GGACAAAAGTGTTTTGGAAGACAATCCTTCAACCTGCGAGTCTGAAAAGCCAATTGGTGATACTTCTTCATGTAGCTCTG CTAAAATTGATGATGCACAAGTTACTGCTGACTCTGAATCCGTATCTGGTGGGAAGGGTCTGCCTCTGGGAGGAGATTGT TGTAACAGTGTGACTTTAAATCAATGTTCGGAAAGCTCTAATAAGCATGCTAGTTGTCTCCTTGGTGTGAACCTTGTTGC TGCTTCCCCAGCTATTTATGGTAAACCAATGTTCCTTTCCAAAAATTGGAGAGATGCACTATGCAAATGTGATAACTGTC TAGAGTTTTACAATCAGAAGCAGATTGCTTTTCTACTTGACAAGGAAGATACAATTTTGGAGTATGAGAAAATGGCCCAA CAAAAGAGACAAGAAAATTTGCAGCAACAGGAAGTTGCTGACTTAGGTTTGTTTAATAACCTTGGACATGTCGCGAAAGT GGAGATCTTGAAGGGAATTGAAGATATGAAAGATGGGCTTCGTACTTTCCTGGTATGTCTATGTAGCATAGCTTTGATGT ATTGTGCTTCTTCACTAGTGCAGGCATGACCTTGTTTGATTAATTATATGTTGTGTTTGATTATGTTATATTTCATGACA GGAGTCCGCAGACACGTCAAAGCCAATTAGTGTTGATGATGTCCACCAGTTTTTTGATGAGATGAAGAAAAAGCGTCGCC GTGTTCAGTGAGTTTTTGTAGTCCTAGCACTTGAAAGACGTTATGGTCGAAACTTCCAGACTGTTTTAGGGGTTATTTGT ATTAACATTATTAGGTCTGCATGTTTATGTTTTATGATACTTATATTACGATGCTTTACCTGTACAACTATTTGACGTAA TAGACTATTTTGAAGTTGATACTTAATCGCATTAGTTTTATTATATCATATTTATCTAAATATATATATTGGTTATATAA TTTGGTCCTTATTCAAAAGTTGGAG
CDS sequence (LotjaGi2g1v0441800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCTGCCTTTGCCGATGAAGTTGATGAAGCTGAGCAGGCTATTACCATCGGCGAGTACATTGAGGAAGAAGAGGA ACGGGAGCTGGTAGCCGATTTAATTTTGGGGGGTGATGCTGGCAAGGAGTGTACCTATAACAAAGGTTATATGAAAAGGC AGGCAATTTTCTCTTGCCTTACCTGCACCCCAGATGGGAATGCTGGAGTTTGCACAGCTTGCTCATTGTCTTGCCATGAT GGTCATCAGGTTGTGGAACTATGGACAAAAAGAAACTTCAGGTGTGATTGTGGGAATTCAAAGTTTGGTGAATTTTACTG CAAGATTTTCCCAAGTAAAGATGTGGAGAATTCTGAGAATGCATACAATCACAACTTCAAAGGTTTGTATTGCACTTGTG GCCTCCCTTATCCAGGTCTAGATGTTGAAGAACAAGTAGAGATGATACAGTGCTGTCTGTGTGAGGACTGGTTTCATGTG GAGCATCTTGGTCTCGAGTCTTCTGATGAGATTCCCAGAGATGATGAAGAAAAAGTGCCATTTTGTGAGGAATTCATGTG TAAGGCATGCTCTGAAGTATGTTCTTTTCTAAAACTATATCCTGAAGGAATATTGGCAACAAGAAGGAAGCCAGAGGCAC CTGTCCAAGTTAGCAAGGACAAAAGTGTTTTGGAAGACAATCCTTCAACCTGCGAGTCTGAAAAGCCAATTGGTGATACT TCTTCATGTAGCTCTGCTAAAATTGATGATGCACAAGTTACTGCTGACTCTGAATCCGTATCTGGTGGGAAGGGTCTGCC TCTGGGAGGAGATTGTTGTAACAGTGTGACTTTAAATCAATGTTCGGAAAGCTCTAATAAGCATGCTAGTTGTCTCCTTG GTGTGAACCTTGTTGCTGCTTCCCCAGCTATTTATGGTAAACCAATGTTCCTTTCCAAAAATTGGAGAGATGCACTATGC AAATGTGATAACTGTCTAGAGTTTTACAATCAGAAGCAGATTGCTTTTCTACTTGACAAGGAAGATACAATTTTGGAGTA TGAGAAAATGGCCCAACAAAAGAGACAAGAAAATTTGCAGCAACAGGAAGTTGCTGACTTAGGTTTGTTTAATAACCTTG GACATGTCGCGAAAGTGGAGATCTTGAAGGGAATTGAAGATATGAAAGATGGGCTTCGTACTTTCCTGGAGTCCGCAGAC ACGTCAAAGCCAATTAGTGTTGATGATGTCCACCAGTTTTTTGATGAGATGAAGAAAAAGCGTCGCCGTGTTCAGTGA
Protein sequence (LotjaGi2g1v0441800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPAFADEVDEAEQAITIGEYIEEEEERELVADLILGGDAGKECTYNKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHD GHQVVELWTKRNFRCDCGNSKFGEFYCKIFPSKDVENSENAYNHNFKGLYCTCGLPYPGLDVEEQVEMIQCCLCEDWFHV EHLGLESSDEIPRDDEEKVPFCEEFMCKACSEVCSFLKLYPEGILATRRKPEAPVQVSKDKSVLEDNPSTCESEKPIGDT SSCSSAKIDDAQVTADSESVSGGKGLPLGGDCCNSVTLNQCSESSNKHASCLLGVNLVAASPAIYGKPMFLSKNWRDALC KCDNCLEFYNQKQIAFLLDKEDTILEYEKMAQQKRQENLQQQEVADLGLFNNLGHVAKVEILKGIEDMKDGLRTFLESAD TSKPISVDDVHQFFDEMKKKRRRVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 423 | 415 | 1.2E-126 | – | |
| PANTHER | 9 | 423 | 415 | 1.2E-126 | ||
| SMART | 42 | 111 | 70 | 1.2E-17 | ||
| ProSiteProfiles | 42 | 112 | 71 | 9.014 | ||
| Pfam | 44 | 108 | 65 | 9.8E-14 | ||
| Gene3D | 114 | 194 | 81 | 1.6E-9 | ||
| SUPERFAMILY | 117 | 201 | 85 | 2.45E-10 | ||
| CDD | 130 | 190 | 61 | 6.01673E-17 | – | |
| MobiDBLite | 225 | 244 | 20 | - | – | |
| Coils | 337 | 357 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi2g1v0441800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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