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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0536500 |
| Transcript ID | LotjaGi3g1v0536500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Set1/Ash2 histone methyltransferase complex subunit ASH2; TAIR: AT1G51450.1 TRAUCO; Swiss-Prot: sp|Q9C8J7|TRO_ARATH Protein TRAUCO; TrEMBL-Plants: tr|V7ADB2|V7ADB2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0536500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95306197..95310089) extracted from Lotus japonicus Gifu genome v1.2.
CAAATTCAAATTGATTCTCTCTCTCTCTGTAACCCTAGCTTCCATGGATAGCTTACTAGCCACTTACAAAGACGAAGAAG AAGAAGAAGATGAAGAGGAGGCTCCACCCACAACCACCACCACATCCACCGCCGCCGACGGTGGCGACGGAGGAGGAGTA GCAGTTGGTGCTGACACGGAACCAATACCAATCGACGTTCCACCCGTCGTTACCAGCACTCCCTCAGACACCCAAACAGA ACCCCAAAACGACGGCAGATCAGAGCCCGACCCCTCCGACGACCTCTCCTCCGAAGAAGCCGCTTCCGACGGCTCTAAGA AGTCACCGAAACGCGAACTCGACGAGGAACAGCAACCTGCTTCGAAGAAGCAGAAGCCGCTCTCCTCTCTCAGCGCCGCG AATCAGGACTCGCCGGCATTGCCGGAGGGAGACAATGCCCCGGCGAGCACCCCGGCGGCGACGAATGGCGGGACGACGAA TCCGAAGAAATCGAAGAAGAAGAACAACAATGTGTGGGCGACGAAATCGAAGAAAGGGAAGAAGAAGAACAAGGGCAACA ACAACAATAACAACAACCACGCCAACAATGGGGAAGACAATGTCCTGATAACTCCCGTTCAGCGGTTTCCGGACAAGGGC GACGACACGCCGGAGATGAAGATATGCTTGTCGAGGGCGTTCAAGGCGGAGAAGGTGGAGCTGAGCGAGGATAGATTGAC TGCAGGGAGCACGAAGGGTTACAGAATGGTGAGGGCAACCAGAGGGGTGATGGAAGGTGCGTGGTACTTTGAGATTAAGG TTGTGAAGTTGGGTGAGACTGGGCACACTCGATTGGGGTGGTCCACGGCGAAGGGTGATTTGCAGGCACCGGTTGGGTAC GATGGGAATAGCTTTGGGTACAGGGACATTGATGGGAGTAAGATACACAAGGCATTGAGGGAGAAGTATGGGGAGGAAGG GTACAAAGAAGGTGATGTTATTGGGTGCTATATCAATTTGCCTGAGGGAGCCAAGTATGAACCAACAGCACAAAACTTGG CGTGGTATAAAGGCCAGAAATATGCTTATCCTAAAGATGGTAAGGAAGAACCACCTAAAGTGGTGCCAGGTATGATGTTG TGATTTTAGCTATAATTATGATTTTCACTTGCTGTTTTGTATCTTTAAATTGAGGTAGGAAAAACAGTAGAGAACTTGCT AGGAACGAAAGCGTAGGTGGATAGTGAAAACAAGATATGGAATCATGTTTTTGCAAACTATATAGGCTTCTAGGTTACTA CTGCAGTACTACTAGGGTGCATGGATCCAGTCCCTCCTTTACAAGGATGAACAATAGGATTGATATATTTGCTACGACCG TGTTTGTGAACATATTGCAAAGGAGGAAAAAGTTTGTTTAGATGTAGTGCTTCTAATCCATCAAATTCTTCCATCTCAAA AAATGTGGCTTTGGAATGTGAGCAAACCCAAGATATAGTGCTTGCAAGTGATTAGTGTTTAACTTTAGATACTAATATTT GATTGTTGCTAGGTGTGTTAGTTTAGGGCCAAGGTAAATAGTTCAGTTTTTTAGGGGATGGGGAAGAAGAGAGTGGACCT GACAACCAGTTTTTTTGCACCGGTTCAATTGATTGTGATTAGGTCATTTGGGTATGCACTCAATTCTGTGTCTAATTTCT GTAGTCTGTGAAACTAAATATTGACAAGAGTTCACCAGTGTTGTCAACAATAAGTGGTGGCCAAAAATGTATAGCGAACT GTTTTTGAAGTGGATAGTTTTAGTCCCTGCAGTTGGGTAAGGTTTATTGAGCTATGGTGTGGTGTACGGACTGCCATGTC ATCTCACCTTTATGTGGCATTCCACTGCCTGTGTGTCTATTATTGCCGCCTAGGAATAGGATTATGAAAATAGCTTGTCA GTTGCACGCGATATCGTCTTCCCACACCATTTCCGTCTTAAGATTGCAGATTATTTGCTGTCTTTCAAATTCAAGTAATT GTCTAAAAGAAAGCACTGGTTCAATATTAAACCATAATTAGTTACTGCTTATGTGAGCTTAAGGGAAACAGCATTTTCAA CTGAGCGAAAAGACACTGTAATTATTCTGAAGAGGGAGGATAAAAAACCAACCAATCATCAATAACATGTAATAGAAACA TGGTAAGAGCAAAATGTGGAAAGGAACCCCTTATCTCTCAATCTATTGCCCTTCCCACACATACTACTCTCTCTCTCTCT CTCTCACACACACACACACACACACACACTACACACACTACACACACTATCTAGAATGCCTCTGTTCTTTCAGTCTCACA ATTATAGAGAGAAAGAGAGGCATTCATTGGTGTCATTGTGACAAAAGCGGCTTTGACAGTGTATAAAATAGAGGCCTTTT TTCTACTTTCCCTGTATGGGAGAAGAGATATCTGCTCTGTAACCCTGTAAGTTTTATTCCTCCTCTGTCTACAAAATAAA ATAAAATCCAGAAAGGGTTTTTTCTAGCCATTTAATGGCATGATTTGCATAATTAACAAGGACTAGAAGAAGTGAAGGAC AATTTGGCTGGAAACCGCCAGAGTAATGACTTAGATTTGATAAAACAGAGACTAGAGTCTCCAGAGAGAAGACAGAGGAG AGAGACCACGAGGACATCACAAGACATCAAAGATAACCCAAGAAATATGCGACAGAGATGAGAGGCCATATGGTTTCCAT GACTTTTCTTGCGTGAGTAGGTTGAAACACTATTACATTGTCTAAATTTAGGTGACCATTTGTTGGAGTTGAGGGCAGAA TTGGCAGATAAGGAAGTTCTCATATGGTATCCAATTAAGAACAGAGTTTTCACGACAAGTAGAATACCTGCAAAGCCACT GAATACTTTCTGTTATTTCATTGATCAAAGATCTGAACATATTGGATTGGCATTGGCCTTTGTCATGGGTATGACATATT TGGATAAGTGAGATATCAAAGCCACCCATGCATTTTGGCTGGTGGGTCGAGTTGTTAGACAATAAAACCATGAAGTACAA TCTTGAAGATGATTTAAATTTGATCCTGATTCGATTCTATGGGCAGTCATGCCGTAACTCTGTCTTAGAGGTGTTGTATA CTATTTTCTATTCCTCAACCTAAATCATGACTGATTGGAATTTGGGGGCACTTGTCGTTTGCTACTTGGGAACCTTGATA GCAGCACATATTTTGTCAGAGGCCCATTAGACATTAGTGATACTCCTTGCAATTAACTGAAAGTGCTGTGGACATTGAGC AACTATATTCCTTGCATATAGTACCCATGTTAAATTTCCCTTGCTTTAAGTTGTATTTTAAGTATCCAATTTATGAATAT TCACTTGCTTATAAAAAAGATTATATGAATATTCACTTGGTATGAAATATTGTGCTCTCTGTGCAGGAAGTGAGATATCT TTCTTTAAAAATGGTGTATGCCAAGGGGTAGCTTTCAAGGATCTTTACGGTGGTCGTTACTATCCTGCTGCTTCAATGTA TACTCTCCCCAATGAACCTAACTGCACTGTCAAGTTCAACTTTGGTCCTGACTTTGAATTCTTTCCTGAGGATTTCAATG AGCGGCCAATTCCCAGACCAATGATTGAAGTTCCGTATCAAAGTTTTGACAATCGAGTTGAAAATGGAGAACCTAATGAG AAGAAACCCTAGAAAGTGATGCGTGTTACAATTTAAGTACATGTGCTGCACAGATGGATGAGTTCATATTCTGCTGTAAT TTTAGTTGATATTTAAATTGTTTCACCAATGACTAGATTAGTGTTAGTGGTGTTAACTTCTGACAGAAATTGTCCATGTG AAATTCTTCAAATTCCAGTGGGTTCAATCAGATAGCTTGTATTTTCTTTGGCA
CDS sequence (LotjaGi3g1v0536500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAGCTTACTAGCCACTTACAAAGACGAAGAAGAAGAAGAAGATGAAGAGGAGGCTCCACCCACAACCACCACCAC ATCCACCGCCGCCGACGGTGGCGACGGAGGAGGAGTAGCAGTTGGTGCTGACACGGAACCAATACCAATCGACGTTCCAC CCGTCGTTACCAGCACTCCCTCAGACACCCAAACAGAACCCCAAAACGACGGCAGATCAGAGCCCGACCCCTCCGACGAC CTCTCCTCCGAAGAAGCCGCTTCCGACGGCTCTAAGAAGTCACCGAAACGCGAACTCGACGAGGAACAGCAACCTGCTTC GAAGAAGCAGAAGCCGCTCTCCTCTCTCAGCGCCGCGAATCAGGACTCGCCGGCATTGCCGGAGGGAGACAATGCCCCGG CGAGCACCCCGGCGGCGACGAATGGCGGGACGACGAATCCGAAGAAATCGAAGAAGAAGAACAACAATGTGTGGGCGACG AAATCGAAGAAAGGGAAGAAGAAGAACAAGGGCAACAACAACAATAACAACAACCACGCCAACAATGGGGAAGACAATGT CCTGATAACTCCCGTTCAGCGGTTTCCGGACAAGGGCGACGACACGCCGGAGATGAAGATATGCTTGTCGAGGGCGTTCA AGGCGGAGAAGGTGGAGCTGAGCGAGGATAGATTGACTGCAGGGAGCACGAAGGGTTACAGAATGGTGAGGGCAACCAGA GGGGTGATGGAAGGTGCGTGGTACTTTGAGATTAAGGTTGTGAAGTTGGGTGAGACTGGGCACACTCGATTGGGGTGGTC CACGGCGAAGGGTGATTTGCAGGCACCGGTTGGGTACGATGGGAATAGCTTTGGGTACAGGGACATTGATGGGAGTAAGA TACACAAGGCATTGAGGGAGAAGTATGGGGAGGAAGGGTACAAAGAAGGTGATGTTATTGGGTGCTATATCAATTTGCCT GAGGGAGCCAAGTATGAACCAACAGCACAAAACTTGGCGTGGTATAAAGGCCAGAAATATGCTTATCCTAAAGATGGAAG TGAGATATCTTTCTTTAAAAATGGTGTATGCCAAGGGGTAGCTTTCAAGGATCTTTACGGTGGTCGTTACTATCCTGCTG CTTCAATGTATACTCTCCCCAATGAACCTAACTGCACTGTCAAGTTCAACTTTGGTCCTGACTTTGAATTCTTTCCTGAG GATTTCAATGAGCGGCCAATTCCCAGACCAATGATTGAAGTTCCGTATCAAAGTTTTGACAATCGAGTTGAAAATGGAGA ACCTAATGAGAAGAAACCCTAG
Protein sequence (LotjaGi3g1v0536500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSLLATYKDEEEEEDEEEAPPTTTTTSTAADGGDGGGVAVGADTEPIPIDVPPVVTSTPSDTQTEPQNDGRSEPDPSDD LSSEEAASDGSKKSPKRELDEEQQPASKKQKPLSSLSAANQDSPALPEGDNAPASTPAATNGGTTNPKKSKKKNNNVWAT KSKKGKKKNKGNNNNNNNHANNGEDNVLITPVQRFPDKGDDTPEMKICLSRAFKAEKVELSEDRLTAGSTKGYRMVRATR GVMEGAWYFEIKVVKLGETGHTRLGWSTAKGDLQAPVGYDGNSFGYRDIDGSKIHKALREKYGEEGYKEGDVIGCYINLP EGAKYEPTAQNLAWYKGQKYAYPKDGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYTLPNEPNCTVKFNFGPDFEFFPE DFNERPIPRPMIEVPYQSFDNRVENGEPNEKKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 185 | 185 | - | – | |
| MobiDBLite | 7 | 21 | 15 | - | – | |
| MobiDBLite | 56 | 71 | 16 | - | – | |
| PANTHER | 57 | 421 | 365 | 1.9E-119 | ||
| MobiDBLite | 72 | 107 | 36 | - | – | |
| MobiDBLite | 108 | 124 | 17 | - | – | |
| MobiDBLite | 134 | 153 | 20 | - | – | |
| MobiDBLite | 154 | 170 | 17 | - | – | |
| MobiDBLite | 171 | 185 | 15 | - | – | |
| ProSiteProfiles | 187 | 396 | 210 | 15.604 | ||
| Gene3D | 205 | 409 | 205 | 4.7E-62 | ||
| SUPERFAMILY | 208 | 399 | 192 | 2.69E-36 | ||
| CDD | 218 | 395 | 178 | 2.76681E-81 | – | |
| SMART | 244 | 395 | 152 | 6.5E-30 | ||
| Pfam | 247 | 322 | 76 | 1.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Set1C/COMPASS complex | A conserved protein complex that catalyzes methylation of histone H3. In Saccharomyces the complex contains Shg1p, Sdc1p, Swd1p, Swd2p, Swd3p, Spp1p, Bre2p, and the trithorax-related Set1p; in mammals it contains the catalytic subunit (SETD1A or SETD1B), WDR5, WDR82, RBBP5, ASH2L/ASH2, CXXC1/CFP1, HCFC1 and DPY30. | ||
| Biological process | Histone H3-K4 methylation | The modification of histone H3 by addition of one or more methyl groups to lysine at position 4 of the histone. |
Expression pattern of LotjaGi3g1v0536500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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