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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0339000 |
| Transcript ID | LotjaGi6g1v0339000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heterogeneous nuclear ribonucleoprotein U-like protein 1; TAIR: AT2G22010.1 related to KPC1; Swiss-Prot: sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 1; TrEMBL-Plants: tr|I1MEA2|I1MEA2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0339000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65316996..65320497) extracted from Lotus japonicus Gifu genome v1.2.
CAAGAGAAGTGTTGTTGTGCTGTGTTTGGCGCTTCGTTTTCACTTTTCAATGGCTTTCAGAAAACGCGATTTCCCAGAAG CTGATCAAGAAGTGGCGGTTTCTCACTCAAACAAGACCAACCAATCTCCATCTTCACCACCATCTCCGTCCATTTCGCCA CCGCACGTCGTTCTCAACCCCGCCGACTGCGACCTAGGTACTCAATTCCCCATCTCTCTTCTTCACTCTCACTCAAAACC CTCCTTCAATTGCAATTTTTCTAAATTTTCTTGATAATTTTCCATACATGATTGCTAGATTTCAATATTGAATGCAACGG GCTTGTTGGACACGCTCTTCACGAGCAAGGTTTTGGTTATTGCTGGTCTGGTGCGCGAGCCACCATTGGAATAACCAAGG GTAGATACTGTTATGGCTGCAAAGTTCTTTCTGCACAACCTGTTCACATTGACGATACTGCCCCTGATCAGAGGCATGTT TGTCGTCTTGGTATTTCAACAGGGGGTGATAGGGTTGGATCCCTTGGGGAGTCTCAACACAGCTTTGGTTACGGCGGGAC CGGGAAGTTTTCGAATCGGGGGAAGTTTGAGAGTTTTGGGGAAAGGTTTGGTGTTGGTGATACGATTGTTTGTTGCGTTG ATCTTGACGCGAAACCGTTGGCTTCTATTGGTTTTGCCAAGAATGGGAGATGGTTAGGTACTGCAGGTGAATTTGATGTT GGTTGTTTAGGTCTTGGAGAGGGGAAAGAATGGAAGTCTGCGGTTTTTCCGCACGTGCTGTTGAAAAATGTTGCGGTTCG GATGCAGTTTAGTGTTGAGGATGGACTTGTTCCGAAAGAAGGGTTTAAGCCTTGGGCCGCGGCTGTTGAGGATGGAGAGA TGGTTATGGGGCCTGCTCTTGCTGATAAGAGGGATTGTGAAGTGATGATGATGGTGGGGTTACCGGCTTCTGGCAAGAGT ACTTGGGCGGAAAAATGGGTGAAGGATCACCCCGAGAAGCGTTATGTTTTGCTCGGGACAAACTGCATTCTTGATCAGAT GAAGGTTTGTGTATCTGCTGACCCTGTTGTGATTACCATTTTTTCTATCTGTAAGTTTTGCTTGACTCGTTGTTGCTGCG CAGGTACCTGGACTGTTGCGGAAACAAAACTATGGTGAAAGATTTGATTGTTTGATGGATAGGGCAACTGAAATATTCAA TGTATTGCTATCCAGGGCAGCTAATATACCTCGCAATTATATAATCGACCAGACAAATGTGTACAAAAATGCACGTAGGC GAAAGCTTAAGCCATTTGCTGACTATCAGAAGGTAGCTATTTATCTATTTGTTTGAAGGAGATTGGAAGATAAATTCCCT ATGGATTTGTGATTATATTTTTTTGTCTATTCAGATTGCTGTTGTTGTATACCCAAAGCCAGAAGAGCTCCGGATGCGGT CTGAGAAAAGATTTAGAGAAATGGGCAAAGAAGTTCCGCAAGATGCTGTGAATACAATGATAGGTATTTTTTTTTGTTCA TTTCCTTTACTTGTTATCTGCCAGTTTTAAGTTCATAATTTCTCTAACTTACAGTCCTTCGTATGGCCATCTGATTTTGT GTGTGTGGCTTTGGCAGCTAATTATGTTCTACCTAAAAGCAAGGATATGCCTCATTCAGATGAGTTTTTTGATCAGGTAT TTAGTAACCTACTAGCCTACAAATTTTGTTGCTGTGGTTGTCAATCATGAGATTACTAAATCTCCATTTGTATTTCAAGG TTATGTTCGTAGAACTGAACCGAGGCGAGTCTCAAAAATATTTGGATCAGATGAAGCAGGATCTTTCATCTCCATCTAAC AATGACCCATCTACATTATCTCGTGGAGGTTCTTTTCCGCCTTCTGCTGGATCTGGTTTGCAAAGTCAAGGATGTTTGAC AGGTTTTTATCTACATGCTGTTTTGCAGTATACTTTTATTGTTCAATACTCTTCAATGATCTTGATGATGATGCACTTGG ATTCAGGCAATGGTGTTCTCCGGCGAGACTCTTATTCCCCTATCTCCCCACCGAGCTATGGGATGCTTAGTCAAGTTAGT CAAATCTGCCTTTTAATAAATATTTCTGTTAAATTCCACACTTATCCATCTTGGTTATTCTGTTTTGTTGCAACAATTCT GATACCTAGTTACATGTTCCCGTAGGTTAATGCAGATCGTCGTATGACCGAACTTCATGGGAGTATGAATTCATTGTCTG GAGTATATCCAAGTAGTCAAATTCCACACGTTGCCCGAGCACGCCCTCCTCCTCTACCTTATTCCTATAATGAATCAAGT TTTCCTAGCGATAATGCTGGCTATGATCCAAATTATGGTGTCATTCCTAGGGGTGATATCGAAGCTTGTAGCCACTCCAG AGTGGATGGCCAATACAGGTCAAACATTGTAGGGAACAATATGGTTCCTCCTGGTGCTTTTCCTAATCCCTACATGAGTA GTATGAATGAACCTTCTCCAATTGCAAGTGCAAGGAGAATGGCTTTCAACCACAGTACTCCAGATAGACCTTATAGTGGC GACAGAGATTTCCGGCCTGACCTGCATACTCCCTCCCCAACCTCATGTAGTTACCTATTCTTCTCCTTACTTTTATTTTT GTCACTTATTTTTCAGTTAATACAATCATGATCTGTTGCTATTACATCTCAGATTCACTTTCTCGGTATGGGCCACCGGC TCCAAGACCTACATATGAAGGGGTACCTGATTCTTTGCGGTATCCAGGGAGGTATGCCCCTCAGCGTCCAAGATACTCCT GAATGCTCTATAGCTGGTCTCTGAAATTAACTGTGTCATTATGGTGAAAGGGATCAAAGCTCACTGACCACTATAGTTTG TAAATATGGATGCCTGTTCTTTTTGCAGATGTATATGAATGGTGAATGGAAGGTGAGGTTCAATTTGTAGGTGAAAAAAA ATAAAGGAAATGTATAAGTTTTTTGTTAGCTTTCTGAACACTTATTATCCACTTAAATAATTACCCAATGAGTGACATCC AGACCAGCGGTTTAATTGGTTTTTAGTTTTCTCTTATTAAGTCCTAATGCTGCAAAATTATTTATTGCTTACATAGTTAC ATATGCATATTCTTGGAAACCAATAAAAACAGTATCTAAAAGCGTTGAAGGCTATATGAGGTTGCATATTCTTGCTACTT GGCCGTTTGCTCTGATAAAATACAGAGATTTGATGTGCTGATCAATTTTATGAAAGCAAGATCAGCTAAATAATAATAAC TATTTATAACAAGAAGACACCTTATACAAAAACCTAAACGAAGGATGGAACTATATCCAGGGCATTAACATGAGTTAATA TGGTCCTGACTATTAGAGCTTTTTTTTTCCAGGCTGCTTCTCAGGCTTGATTCATATTTTTATATGCATGAAAGCAGAGT ATTGAAATTTGAACTATGAAGCAAAAACAGTTTTATGAAACATAAGCATGGACAAGTTCCTG
CDS sequence (LotjaGi6g1v0339000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCAGAAAACGCGATTTCCCAGAAGCTGATCAAGAAGTGGCGGTTTCTCACTCAAACAAGACCAACCAATCTCC ATCTTCACCACCATCTCCGTCCATTTCGCCACCGCACGTCGTTCTCAACCCCGCCGACTGCGACCTAGATTTCAATATTG AATGCAACGGGCTTGTTGGACACGCTCTTCACGAGCAAGGTTTTGGTTATTGCTGGTCTGGTGCGCGAGCCACCATTGGA ATAACCAAGGGTAGATACTGTTATGGCTGCAAAGTTCTTTCTGCACAACCTGTTCACATTGACGATACTGCCCCTGATCA GAGGCATGTTTGTCGTCTTGGTATTTCAACAGGGGGTGATAGGGTTGGATCCCTTGGGGAGTCTCAACACAGCTTTGGTT ACGGCGGGACCGGGAAGTTTTCGAATCGGGGGAAGTTTGAGAGTTTTGGGGAAAGGTTTGGTGTTGGTGATACGATTGTT TGTTGCGTTGATCTTGACGCGAAACCGTTGGCTTCTATTGGTTTTGCCAAGAATGGGAGATGGTTAGGTACTGCAGGTGA ATTTGATGTTGGTTGTTTAGGTCTTGGAGAGGGGAAAGAATGGAAGTCTGCGGTTTTTCCGCACGTGCTGTTGAAAAATG TTGCGGTTCGGATGCAGTTTAGTGTTGAGGATGGACTTGTTCCGAAAGAAGGGTTTAAGCCTTGGGCCGCGGCTGTTGAG GATGGAGAGATGGTTATGGGGCCTGCTCTTGCTGATAAGAGGGATTGTGAAGTGATGATGATGGTGGGGTTACCGGCTTC TGGCAAGAGTACTTGGGCGGAAAAATGGGTGAAGGATCACCCCGAGAAGCGTTATGTTTTGCTCGGGACAAACTGCATTC TTGATCAGATGAAGGTACCTGGACTGTTGCGGAAACAAAACTATGGTGAAAGATTTGATTGTTTGATGGATAGGGCAACT GAAATATTCAATGTATTGCTATCCAGGGCAGCTAATATACCTCGCAATTATATAATCGACCAGACAAATGTGTACAAAAA TGCACGTAGGCGAAAGCTTAAGCCATTTGCTGACTATCAGAAGATTGCTGTTGTTGTATACCCAAAGCCAGAAGAGCTCC GGATGCGGTCTGAGAAAAGATTTAGAGAAATGGGCAAAGAAGTTCCGCAAGATGCTGTGAATACAATGATAGCTAATTAT GTTCTACCTAAAAGCAAGGATATGCCTCATTCAGATGAGTTTTTTGATCAGGTTATGTTCGTAGAACTGAACCGAGGCGA GTCTCAAAAATATTTGGATCAGATGAAGCAGGATCTTTCATCTCCATCTAACAATGACCCATCTACATTATCTCGTGGAG GTTCTTTTCCGCCTTCTGCTGGATCTGGTTTGCAAAGTCAAGGATGTTTGACAGGCAATGGTGTTCTCCGGCGAGACTCT TATTCCCCTATCTCCCCACCGAGCTATGGGATGCTTAGTCAAGTTAATGCAGATCGTCGTATGACCGAACTTCATGGGAG TATGAATTCATTGTCTGGAGTATATCCAAGTAGTCAAATTCCACACGTTGCCCGAGCACGCCCTCCTCCTCTACCTTATT CCTATAATGAATCAAGTTTTCCTAGCGATAATGCTGGCTATGATCCAAATTATGGTGTCATTCCTAGGGGTGATATCGAA GCTTGTAGCCACTCCAGAGTGGATGGCCAATACAGGTCAAACATTGTAGGGAACAATATGGTTCCTCCTGGTGCTTTTCC TAATCCCTACATGAGTAGTATGAATGAACCTTCTCCAATTGCAAGTGCAAGGAGAATGGCTTTCAACCACAGTACTCCAG ATAGACCTTATAGTGGCGACAGAGATTTCCGGCCTGACCTGCATACTCCCTCCCCAACCTCATATTCACTTTCTCGGTAT GGGCCACCGGCTCCAAGACCTACATATGAAGGGGTACCTGATTCTTTGCGGTATCCAGGGAGGTATGCCCCTCAGCGTCC AAGATACTCCTGA
Protein sequence (LotjaGi6g1v0339000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFRKRDFPEADQEVAVSHSNKTNQSPSSPPSPSISPPHVVLNPADCDLDFNIECNGLVGHALHEQGFGYCWSGARATIG ITKGRYCYGCKVLSAQPVHIDDTAPDQRHVCRLGISTGGDRVGSLGESQHSFGYGGTGKFSNRGKFESFGERFGVGDTIV CCVDLDAKPLASIGFAKNGRWLGTAGEFDVGCLGLGEGKEWKSAVFPHVLLKNVAVRMQFSVEDGLVPKEGFKPWAAAVE DGEMVMGPALADKRDCEVMMMVGLPASGKSTWAEKWVKDHPEKRYVLLGTNCILDQMKVPGLLRKQNYGERFDCLMDRAT EIFNVLLSRAANIPRNYIIDQTNVYKNARRRKLKPFADYQKIAVVVYPKPEELRMRSEKRFREMGKEVPQDAVNTMIANY VLPKSKDMPHSDEFFDQVMFVELNRGESQKYLDQMKQDLSSPSNNDPSTLSRGGSFPPSAGSGLQSQGCLTGNGVLRRDS YSPISPPSYGMLSQVNADRRMTELHGSMNSLSGVYPSSQIPHVARARPPPLPYSYNESSFPSDNAGYDPNYGVIPRGDIE ACSHSRVDGQYRSNIVGNNMVPPGAFPNPYMSSMNEPSPIASARRMAFNHSTPDRPYSGDRDFRPDLHTPSPTSYSLSRY GPPAPRPTYEGVPDSLRYPGRYAPQRPRYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 15 | 669 | 655 | 4.6E-209 | – | |
| PANTHER | 15 | 669 | 655 | 4.6E-209 | – | |
| SUPERFAMILY | 20 | 220 | 201 | 1.66E-20 | ||
| Gene3D | 38 | 249 | 212 | 1.1E-41 | ||
| CDD | 40 | 221 | 182 | 7.07777E-63 | ||
| SMART | 83 | 224 | 142 | 2.4E-8 | ||
| Gene3D | 252 | 434 | 183 | 4.4E-24 | – | |
| SUPERFAMILY | 254 | 432 | 179 | 3.38E-10 | ||
| Pfam | 258 | 403 | 146 | 3.5E-25 | – | |
| MobiDBLite | 434 | 473 | 40 | - | – | |
| MobiDBLite | 434 | 489 | 56 | - | – | |
| MobiDBLite | 609 | 670 | 62 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0339000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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