Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v3755440.1

Overview

Field Value
Gene ID Lj3g3v3755440
Transcript ID Lj3g3v3755440.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ran-binding protein 10-like [Glycine max] gi|356541828|ref|XP_003539374.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50188
21 209 189 21.206
IPR001870
MobiDBLite
mobidb-lite
24 45 22 – –
PANTHER
PTHR12864:SF14
37 451 415 7.30E-163 –
PANTHER
PTHR12864
37 451 415 7.30E-163 –
SUPERFAMILY
SSF49899
47 211 165 4.91E-24
IPR013320
CDD
cd12885
75 205 131 1.44E-56 –
SMART
SM00449
87 208 122 1.30E-21
IPR003877
Pfam
PF00622
90 206 117 4.10E-21
IPR003877
ProSiteProfiles
PS50896
234 266 33 7.896
IPR006594
ProSiteProfiles
PS50897
286 344 59 12.854
IPR006595
SMART
SM00668
286 344 59 1.90E-12
IPR006595
Pfam
PF10607
288 429 142 2.90E-21
IPR024964
SMART
SM00757
340 439 100 1.30E-22
IPR013144

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj3g3v3755440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3755440.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.