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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004806
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.538s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3328650.1
n.a. RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1| chr1 37256074 37261582 +
3 domain predictions
2 GO terms
Lj2g3v1155470.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr2 18260546 18268422 +
3 domain predictions
2 GO terms
Lj3g3v0707070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr3 7617384 7624966 +
3 domain predictions
2 GO terms
Lj5g3v2215070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr5 31881296 31885879 +
3 domain predictions
2 GO terms
LotjaGi1g1v0550600.1
n.a. RAD23 UV excision repair family protein; TAIR: AT5G38470.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L30|RD23D_ARATH Ubiquitin receptor RAD23d; TrEMBL-Plants: tr|I3SBD5|I3SBD5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0550600 LjG1.1_chr1 108165035 108170749 +
3 domain predictions
2 GO terms
LotjaGi2g1v0277900.1
n.a. RAD23 UV excision repair family protein; TAIR: AT3G02540.3 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A151RI27|A0A151RI27_CAJCA Putative DNA repair protein RAD23-3; Found in the gene: LotjaGi2g1v0277900 LjG1.1_chr2 74961554 74969384 +
3 domain predictions
2 GO terms
LotjaGi3g1v0002300.1
n.a. Ubiquitin family protein; TAIR: AT1G79650.2 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L33|RD23B_ARATH Ubiquitin receptor RAD23b; TrEMBL-Plants: tr|A0A0S3SF25|A0A0S3SF25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0002300 LjG1.1_chr3 333342 338615 +
3 domain predictions
2 GO terms
LotjaGi5g1v0340800.1
n.a. RAD23 UV excision repair family protein; TAIR: AT3G02540.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A0L9U0N9|A0A0L9U0N9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0340800 LjG1.1_chr5 65826929 65831196 +
2 domain predictions
2 GO terms