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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0707070 |
| Transcript ID | Lj3g3v0707070.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 63 | 63 | 2.60E-04 | ||
| SUPERFAMILY | 8 | 66 | 59 | 1.49E-12 | ||
| TIGRFAM | 9 | 385 | 377 | 4.70E-107 | ||
| Pfam | 10 | 64 | 55 | 6.80E-11 | ||
| Gene3D | 10 | 66 | 57 | 2.00E-11 | – | |
| ProSiteProfiles | 11 | 67 | 57 | 13.054 | ||
| PANTHER | 11 | 382 | 372 | 5.60E-225 | – | |
| PANTHER | 11 | 382 | 372 | 5.60E-225 | – | |
| MobiDBLite | 84 | 139 | 56 | – | – | |
| Gene3D | 150 | 201 | 52 | 2.30E-19 | – | |
| ProSiteProfiles | 152 | 198 | 47 | 11.655 | ||
| SUPERFAMILY | 154 | 208 | 55 | 4.81E-12 | ||
| SMART | 157 | 197 | 41 | 6.20E-04 | ||
| Pfam | 160 | 195 | 36 | 3.60E-14 | ||
| MobiDBLite | 209 | 235 | 27 | – | – | |
| Gene3D | 256 | 322 | 67 | 1.20E-29 | ||
| SUPERFAMILY | 257 | 322 | 66 | 1.96E-21 | ||
| SMART | 258 | 301 | 44 | 5.20E-05 | ||
| Pfam | 260 | 315 | 56 | 2.00E-22 | ||
| PRINTS | 286 | 308 | 23 | 1.80E-33 | ||
| SUPERFAMILY | 328 | 385 | 58 | 4.86E-15 | ||
| PRINTS | 336 | 352 | 17 | 1.80E-33 | ||
| CDD | 338 | 380 | 43 | 1.68E-23 | – | |
| ProSiteProfiles | 339 | 380 | 42 | 14.547 | ||
| Gene3D | 339 | 384 | 46 | 8.70E-26 | – | |
| SMART | 342 | 379 | 38 | 1.70E-08 | ||
| Pfam | 342 | 377 | 36 | 1.10E-13 | ||
| PRINTS | 353 | 367 | 15 | 1.80E-33 | ||
| PRINTS | 368 | 383 | 16 | 1.80E-33 | ||
| Coils | 381 | 387 | 7 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Damaged DNA binding | Interacting selectively and non-covalently with damaged DNA. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Biological process | Proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
Expression pattern of Lj3g3v0707070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0707070.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.