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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0002300 |
| Transcript ID | LotjaGi3g1v0002300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin family protein; TAIR: AT1G79650.2 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L33|RD23B_ARATH Ubiquitin receptor RAD23b; TrEMBL-Plants: tr|A0A0S3SF25|A0A0S3SF25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0002300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:333342..338615) extracted from Lotus japonicus Gifu genome v1.2.
GTCCATGAACACAAAAAAGTGTAGTCTTACTCTAATTTAAGGAAAAAGAAAAATTAAGGAGAAAGAAAAAGAGTGTGCGA GGCAAAGTGGCTAGGGTTTCATTGCCAGCAGCAGCGTAGCTGAATCGGATTGAGATCGGTGCTGTTACGTTGCGGAGGCT CCGATGAAGCTCACCGTCAAGACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAACCCTCTGATTCTGTTAGTTTTCT CTTCGTTTTCATTGCTTTCAATTCTGTTTTCTTCTGCCTTCTCTCTCGCTGAGCTGCATTGTTCATTCTATTCGTCATTG TTCTGAAACTGCCATTTTTAATTCAAAGTTTTTATCTTTGTATTTTCCCTGTATCATTGATTATTATTTTTATGTGATAT TTGATATGATTATGCTGTGATGTGAATTGTGATGTAACCCCTTACTTTTGATTTCTTTCTTTCTCATTTCTGTTAAATAA ATGATCTTTGGTGTCTGCACTCAAGCCTCTCTGTGTCAATTCCATGTTGCCCTTTTTTAATCTAATGTCAATTTCATATT TGCCCTTTTTTCTAGCTGAAATTGAGCTACTATCTTTTTTAACTCAGATTATGGCTGTCAAAAAGAATATTGAAGATGTG CAAGGCAAAGATAATTACCCATGTGGGCAGCAATTGCTTATTCACAATGGGAAGGTTTTGAAAGATGAAACTACACTAGC AGATAATAAGGTCTCTGAGGATGGCTTTCTTGTTGTCATGCTTAGTAAGGTATGTTAATACTGAATTCAATTTATCTAGT TTATTGTAAACATATTACCATCTAGGTTGCATAGATACGGGTACGGCCACGGGATATGGGATTTTTTTAAATTTAAGGTA CTGGTATGTCCATATATATTTAAAAGATAAAAGAATGCCAATTAGTGCGTCACTTTCATCTAATCTCACTTAATTTTATT ATTTACAATTAATAGAAAACCCACCTTTCCCATGGCTTAGCAAATAAAAAAAAGACAAGAAACTAGAAGAAAAGAAGAAA TTGGGGATCGGCATTTTCGATTTAAAATCAGCAATCTTAAATAGAACAAAATATTGGTTCATGGGAGAATCGATTCATAC ATGAATAGAGGTCAAGAACGGCTTACAGGCGTATGGTGGAGAATGAACAGGATGGCCTCCTAGCGCTCATGAACATCGAA GAGGATGGTTGTGCAGCAAACAACCGAGTAGCACCGCGAGCAGACTCGAAGTACATGTAAAATGGTGGCCGGCGGACGAG GGAGAAAATCAAACATGAGTGAGGGAAGAGCAGCGGTAGGTGTGGATGAGGTTAAAGAAGTGGAGTGAGTAATCTGTAAT TGATTTTTTTCTTTTATATAAAACATAAAACGACGTAGTTTTGAGAATTAAGAACCGACGAAGTACCCGTGGAGAACTCG AAACGTACCCAAAATGTACCCAATTTTTTTATTTGGAAATTGGTACGTACCCGTAACCTACCTAGGTTTGCCCATGCTTT GGAGATTACCATAATATGCCATTTTAATATTCTTCTATTTGCAGAGCAAGACCATGGGATCTGCTGGCACTTCATCGACT CAGGCATGTTCTTCCTCATTTTTATTATCCTTTTTCCATTTGGGTTATCTTTCTTTTTACACTGTATGAGCTGGTGATTG TGCATGTATTGACAGCCTGCTAGCAATCCACCTATATCAGTATCAACACCTAATCCCGCAGCTCCAGTACAAACTCAGTG AGTTTGTTTGAAATAGTTTATGATGTAGTTGTTTTTATATCAGCTGAGTTTTTGCCCTAATTTATGTTATCTGGTTCTGC AGGTCTGCAAACAATGTTGCATCTGCCACAGATGCCACAACTACGAAGTATGGCTTTTATTTGTATATTTCTCTGGATAT ACTATTAAAAAATTGTAATGAAGTTTCTATTCATTATGCCACTATATATATACTGCCTTTAAGTAGTTCCTGTCTCATGA TCAATAAGCTCTGCGTTTAATCTTTAGCAATACATTCAGGAGTCCAAATGTGTTGAATTTGGCATGATGCTAGTAGGGCT AGCATGTAAATTTGGGATACCCTGATTTAATATTCCAATTAAGATTGTCTGATCGCAAATCGGACAGGTCCTAATTAATT ACTATTTCCTTTTCACAAGAAGGACAGGCCAATTTTGCCAGAGGCTAGATTGGGGTGAAATGAAAATGAGCTAGCCTGAT AATTTTTGGTTTGGCCTGATCTAGTTAGTTATTCTTTCCTCCACTGTCCTGATAGGCAAGCCAGTTTGGTCCGATTCTAA GCTGGGCCAGCAATGATTTCAGGCTTGCACAAACTATCGATTTTTTTTTCCTGTCATGGCCCCTGAGAAGGGCCAAACTT TGGAGTAAAATATCATTTTGATCCCTAAAAGTGTAGCGTTTGTCATTTTAGATTTGTGTATTCCCTGAAAGTATGATCCG TTGGTCAATCTAATTAATCTTTTTTTTACAATCAGGGTCCTGGGAAGGGCCAGACTTGTGTCTAGGCTTATTCATCTCAT TGCATTTAGACATCACTACAGCTGCCATTTTCAATTGTTCACCAATCTTTAGATCTAAATTTTTAAAACCTTGTATACTA TGTACAAACCATAGTCTTCTAATTATAATTACGCCCAAAGTTTTCATGATATCCATAAACATCTCACCATCATGCTGCAA TCAACTAATTGAGTCGTTTTCCATTCCCCCCTTTCATTTAATCAAGCCTTTTGAAATACATTTTGCTGTCTTTTTTGCAG TGTGACTGCAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAGTAATATTGAGCAGACTATTCAACAAA TTATGGACATGGGCGGTGGCAGCTGGGACCGGGATACAGTTAGTCGTGCTCTTCAAGCAGCTTTTAATAACCCAGAGCGT GCTGTAGATTACTTGTATTCTGTATGGCTTTACTGCTCACCGTAGATTCCAAGTGCTCAAGTTTGCTGCTGTATCTTTTC AATGTCACAATTATTTATTTATTTATTTGCAGGGAATTCCTGTGGCAGCGGAAGTTGTTGTACCGGCTGCTAATCACCCA AGTAGTCAGACTACTGAAACAGGTGGGGTCAGTGCTGGAGCTGTTCCCGGGGTCCCTAACTCATCTCCTTTGAATATGTT TCCTCAGGTAAAAATTATTATTTTAATAGATTGTCAAAAGTCATGTTCCCTTGTAACTTGTCATGAAATCTTTTGCTGTT ACTGTCTGTGACTTATTTTAAGTTGAAACTCTTTTAGGAGACAATTTCTGGTGCTGGAGCTGGAGTTGGATCTCTTGACT TCCTGAGGAACAATCCCCAGGTGGGTTTCTGTTTCATCAATTGCTGTGCTCTAAATGTTAGAAGGCATTTATGCTTGGCA CGTCCGTGTCGTGATCACATTTACTAATTGAATATTCTGGGCTATATTTTGACAATTTGCTTATACCACAAATGACACCA ACCTGATGAAGTCTGAAATATAAATTTGGACTACCAGGTTACATTGTTTTCCTCGTTGGTGATATGTAGAAAAGAACAAA TGAAGTAGACAGAAATTCCATTCCACTAAGTAAACAATAAATTTTATGTTGTGCATTCTTCTTTTAATTCCGCTATAGTA GCTATTACAAAAAATGGCAAGAGATAAGAAAAAAATTTGCTGTGATTGTATTCTCTTGTCTATTAAATTATGTTATTGTT TTTATTTATTGGAGCTAGTCAGAAATGCACAATAGTTTCAAAATCATGCACATCGTTAGTGGGTTGATATGTAGACAATA TAGTATTGAAAATAACTTGTTTTCTTCTTCTCTTCCTTCAAACTTTGCTCTGATGGCCTTTATTCACTTGTTTCTTGTCC GCGTATTTAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCCCAAATTCTTCAGGTATCTTATCTATTTATTTTCT CATTCTCTCAGTACCTGACTTTTGGTCATTTGCTATTTGTTAATGCCTATATGATCATTTCGATCGCAGCCTGTACTTCA GGAGCTGGGGAAGCAGAATCCCAGTCTCTTAAGACTTATTGATGAGCATCATGCTGAGTTTCTCCAGTTAATAAATGAAC CCGTTGAGGGTTCTGAAGGGTGAGTGTACTGCTTGCCTTATGTGGTATATATGACAATTTATCATTTCATCTTTGGATTT TATAAACATTACTTGATCCCATAATCATCCTTCTATTGCATCTGATTTCAATTCTTGGCTTTTAGTCTTTTTTTGAAACA TGAAAGTAGCCTTTTGACTTGTTAGGCTGATAATCCTTTCCTGGAATCATTTATAGGACATAACATTGAACTAGTAGCTT ACTTTCTATGCATGATCATTGAAACTTTTTGGTTAGAAATGTAACCCTCTTTCTTCTCTTAGTGATATATTTGATCAGCC TGAGCAAGAAATGCCTCATGCCATCAATGTGACACCAGCTGAGCAGGAGGCGATTGGAAGGGTATGTTTGCATTTATTAA ATCTGATTTGTGTTCTTTTCATTTTTAACTGACTGACCCCAACAGTCTTCATTTTCGAAGACACTCAAAAAAGTTAGTCT TCATATTTGCTGATTGATTTGTACTCATGATTCGTAGCTTGAGGCCATGGGATTCGATCGAGCCTCTGTCATAGAGGCAT TTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTTGAAAATCCTGGAGATTTTGAGGATTAAATCACT AACCTACAGCTATTCATAGTTTTGTTCAGGCCTTTTTTTTTTTCTTCTTTTTTATATTTATCTGGGTGGGTTGTTTACAT TTCTTTACATTTAATGTGTCATTCTCGGCAAATTTATGTGGGTAGAGTTTTGAATTTGGATCCCGTATTTAGCTGAAATA TTTGGACTATTACTCTTTATTTTAAAATGGTTAAATATTATATAACAGCGTCTTAAGTTGTCTAGCCAGATGAAGTTGGA AATGTATAATTACAAGTTGATTTATACTAACCAACCTATGTTGGCTCAGTTGGCAAAGACAGACCACTTCCATGAGAAGG TTGTGTGTTTGATTTTCACAGCCAACGTAAGAGTTGTGTTGGTGGGTGATTTGTAAGTATTTCTGTAAGCGACCTGTGGT CTTGAAGCCCTGGCCTGTGGTGATGACCAGAGTTGAATTCACCCAAACTATTATTCTTCTAAGAATAAATTGAT
CDS sequence (LotjaGi3g1v0002300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCACCGTCAAGACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAACCCTCTGATTCTATTATGGCTGTCAA AAAGAATATTGAAGATGTGCAAGGCAAAGATAATTACCCATGTGGGCAGCAATTGCTTATTCACAATGGGAAGGTTTTGA AAGATGAAACTACACTAGCAGATAATAAGGTCTCTGAGGATGGCTTTCTTGTTGTCATGCTTAGTAAGAGCAAGACCATG GGATCTGCTGGCACTTCATCGACTCAGCCTGCTAGCAATCCACCTATATCAGTATCAACACCTAATCCCGCAGCTCCAGT ACAAACTCAGTCTGCAAACAATGTTGCATCTGCCACAGATGCCACAACTACGAATGTGACTGCAGATACTTATGGTCAGG CTGCTTCAAATTTAGTTGCTGGTAGTAGTAATATTGAGCAGACTATTCAACAAATTATGGACATGGGCGGTGGCAGCTGG GACCGGGATACAGTTAGTCGTGCTCTTCAAGCAGCTTTTAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAAT TCCTGTGGCAGCGGAAGTTGTTGTACCGGCTGCTAATCACCCAAGTAGTCAGACTACTGAAACAGGTGGGGTCAGTGCTG GAGCTGTTCCCGGGGTCCCTAACTCATCTCCTTTGAATATGTTTCCTCAGGAGACAATTTCTGGTGCTGGAGCTGGAGTT GGATCTCTTGACTTCCTGAGGAACAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCCCAAATTCTTCA GCCTGTACTTCAGGAGCTGGGGAAGCAGAATCCCAGTCTCTTAAGACTTATTGATGAGCATCATGCTGAGTTTCTCCAGT TAATAAATGAACCCGTTGAGGGTTCTGAAGGTGATATATTTGATCAGCCTGAGCAAGAAATGCCTCATGCCATCAATGTG ACACCAGCTGAGCAGGAGGCGATTGGAAGGCTTGAGGCCATGGGATTCGATCGAGCCTCTGTCATAGAGGCATTTTTGGC ATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTTGAAAATCCTGGAGATTTTGAGGATTAA
Protein sequence (LotjaGi3g1v0002300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLTVKTLKGSHFEIRVQPSDSIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTM GSAGTSSTQPASNPPISVSTPNPAAPVQTQSANNVASATDATTTNVTADTYGQAASNLVAGSSNIEQTIQQIMDMGGGSW DRDTVSRALQAAFNNPERAVDYLYSGIPVAAEVVVPAANHPSSQTTETGGVSAGAVPGVPNSSPLNMFPQETISGAGAGV GSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLRLIDEHHAEFLQLINEPVEGSEGDIFDQPEQEMPHAINV TPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENPGDFED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 367 | 367 | 1.9E-124 | ||
| SMART | 1 | 75 | 75 | 6.8E-22 | ||
| ProSiteProfiles | 1 | 79 | 79 | 18.28 | ||
| SUPERFAMILY | 1 | 85 | 85 | 3.45E-21 | ||
| Gene3D | 1 | 80 | 80 | 6.5E-22 | – | |
| CDD | 1 | 74 | 74 | 6.26949E-30 | – | |
| PANTHER | 1 | 368 | 368 | 5.0E-190 | – | |
| PANTHER | 1 | 368 | 368 | 5.0E-190 | – | |
| Pfam | 3 | 76 | 74 | 4.5E-16 | ||
| MobiDBLite | 80 | 108 | 29 | - | – | |
| MobiDBLite | 80 | 95 | 16 | - | – | |
| SUPERFAMILY | 127 | 193 | 67 | 2.07E-13 | ||
| Gene3D | 138 | 188 | 51 | 4.4E-20 | – | |
| ProSiteProfiles | 143 | 186 | 44 | 12.619 | ||
| Pfam | 145 | 183 | 39 | 1.3E-13 | ||
| SMART | 145 | 185 | 41 | 7.7E-5 | ||
| Gene3D | 233 | 299 | 67 | 2.2E-27 | ||
| SMART | 241 | 284 | 44 | 5.4E-8 | ||
| SUPERFAMILY | 241 | 306 | 66 | 9.81E-23 | ||
| Pfam | 243 | 298 | 56 | 1.1E-24 | ||
| PRINTS | 269 | 291 | 23 | 1.4E-28 | ||
| SUPERFAMILY | 303 | 365 | 63 | 7.78E-14 | ||
| Gene3D | 315 | 363 | 49 | 9.1E-22 | – | |
| PRINTS | 318 | 334 | 17 | 1.4E-28 | ||
| ProSiteProfiles | 322 | 362 | 41 | 14.21 | ||
| SMART | 324 | 361 | 38 | 1.4E-6 | ||
| Pfam | 324 | 359 | 36 | 4.4E-10 | ||
| PRINTS | 335 | 349 | 15 | 1.4E-28 | ||
| PRINTS | 350 | 365 | 16 | 1.4E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Damaged DNA binding | Interacting selectively and non-covalently with damaged DNA. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Biological process | Proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
Expression pattern of LotjaGi3g1v0002300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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