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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0550600 |
| Transcript ID | LotjaGi1g1v0550600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RAD23 UV excision repair family protein; TAIR: AT5G38470.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L30|RD23D_ARATH Ubiquitin receptor RAD23d; TrEMBL-Plants: tr|I3SBD5|I3SBD5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0550600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108165035..108170749) extracted from Lotus japonicus Gifu genome v1.2.
GAAATTTCAAGAACACAGAGGAAGCAGCGTAGTCGCATCCACACCTGATAACTCTATATAAAACGGCAACAGAGCACAAC GTTTCGAAGTTCGCTGACTCTCTCTGTTGTTGTGTGCGTGCGCGTTTCTTCTCCCAAAAACCAAACCCCACTCTCTTCTC TTCTCCTTCCAGTGATCGATCGGAGATGAAGATTAACGTCAAGACACTCAAGGGCACTCACTTTCAGATCCAAGTTAACC TACAAGACTCGGTAATGCTATCAATTTCTCAAACACTCATTTCAATTTCACGGAAATTCAACATCACTTCGAATTCATCA ACAATTTTTATTTATTTATTTAGGGTTTTTTTAATTTTCTTGTAATTTTCTTGATGTTTATGTTGGAATTTGGTGAAGGT TTTTCGTTTGTGTGTAATTATAATGGAATTGAATGTGTTTTGATTGTTTATGTGTATTGATTTTTGTTGATGTGTGGGTG GTAATGTTGTTAGGTTGCTGATGTGAAGAAGACTATAGAGGTGGCGCAAGGTGCTGGTGTTTACCCTGCTGCGCAGCAAA TGCTTATTCATCAGGGGAAGGTGCTGAAGGATGACACAACCCTGGAAGAGAATAATGTTGCTGAGGATAGTTTCGTGGTC ATCATGTTGAGCAAGGTGATGAATCATGATCATCATCATGTTATTTGTGTGCGAAACTTTTTTTCGGCTGTCAGTGATTT TTTATGAAGGTTTTGATTTAATTGGGGAAGCTGGATTAATACTGATATATCAGCACAAATCTGACATTATTTGAGACTTG CCTACTGATCATTTTCAGCTTGTGTCGTATGATTTCGTATCATGGAGTTTTCAGTTTTACTGTTGAAGTTTTGTATATAC AAATTTTCTATTGATTTTGCAATGACTTGTGCTGATTGTATGAAAAAAGATTTGTCTGTCTTTTTATCTTGTATGATATG TATGTTGTGTGTGGGGAGAGAGACTGTGTGTGTGTGTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCCATTTTCA ACCTTCATTGGCTTATTTGTAATATTGTTTTAATTGGCGTACTGCTAATTTTTCATTGTGATCTTCCCATTGCAGAATAA GGTATCATCAAGTGGAGCCTCAACTGCTGCAGCGGCACCACCAAATCCGGTGACGGTGAGTGATAAATTTTTACTCTTGG TTTTATTTTATATTTTTATTGCTTTCATTTTCTTACATTTTGTTGACTTGTCAAAATTTATCACTTCCTTGATGAAGTTC TTTATAAAGTTAAAGCTTGATGTCGTTACTGTCTCGGCTGTTGGATGGATATTACAATGATTTGTTTATTCATTTGAAGT ATTATTGTTTTGACAAGTCTTTTCAAAATGTGTCTGTGCGTGCTTGTGTTGGTATCTTCATCTGGTACTATGGTTATCTT CATAGTCTTTATGTTGAGCACCTATATAGAAAAGTATGTGATAAAGATATGATGGGGTTCAACTAATATTGGATGCTGAT TATGGATTGTCTTATGTTGAAAATTTCACATGACGTATTGACACTTCATAGTTTCTTTTTGTTTAACTTATTGTATCTAC GCTGAATTCATTTTTGCATGATTATTCATGTTTTTCGTCGACTTCACGTGTTGATGACAGTAAAGTGTTATCATTCTTAT TTTGTTGTTTCTTCTTACTTGTTATTTACTTGTTTAGGCTCCCCAACCTGCAAGTTCTGTGCCTCCCACCTCATCAACAC CAGAACCTCCCACTTCAGCTGTAGGACAGTGAGTTCATATTCATTTTCCCTGCTTCATATTTTTAGCATGATGAATTTAT TTATTTATTTGTAGTTTTCATGCGAAATTCTCTTGTCTTTTACTCCACTTTCAGGGGAGCCTCCAATTCTGAGCAAAGTC CTGTTATAACTCCTCCAACTGCGTAAGTATCTGGAATTTTCTCTATCATGGGCAACCTTGATGCCATACCAGCTCTCTTC CTCTGTAAATAGTTTTTTGTTATAATTGCATAATATCTTATTCTTGGCCATTTGTTTCTTTTATGCTGAATAATTAAAAA ATCCAGCTCTTTCTATTGAAGCCAGTTTCTTCCTATGAAATCTATTATTGTTCTGTGAACTTAAATATATTTTTTATATC TTTGTTATTGCAGTGCTGTGTCCAGCGTATATGGCCAAGCAGCTTCAAATCTCATTGCAGGAAGTAATGTAGACCCTACT GTTCAACAGATTCTTGAAATGGGGGGAGGAAGTTGGGATCGGGATACTGTTATTCGTGCTCTTCGTGCTGCATATAACAA TCCGGAACGAGCTGTTGAATACCTCTATTCTGTAAGTCTATGCACAGACTGGCTTCTTTGTCATCTAAACTATGGATGTT TCAGACTTTCAGTTGTTAATTTGGTAGCATGCTATCTGTTGGAAGCTTTTTAGAGGCTCAATGCTACCACTTCATTTTAA ATTTTGATTGACTTACTGGCACAAAGAATTATGCCTACAAAACTTATGCTTCTAGTCAAATATGTCTACTTGTGCCATTA CAGTTTTAATGATTTATTTACTAACAATTTACTTGTCTAAGGCATCTTAAGGCTATGTTTGGCTTATGAATAGAACAAAA CAGGACAACTTGTTTTATTTTGGTCTTCGGTTCTACCCTTTTGCCAGCACCAAATTGGCCAACTTTTTACTTTCTGTCTT ATTTCATGCTACTTTTGATATTGAACTCATATTTTGTTTTGCCTTGTTCAAACTTGTCTATCGACGCTACCTGAGAGAAA ATATTTGGTAATAGGAAAGTGTCAAGATTTTAAATGCTAATATCAGGGGAATAAGTTGGTTGTTTAATATTTGAGTGTCA AACACATGGCTTCTTTTCCCTTATGGAAATGAACCTGTCCTGGTACCTGGATCATGGTTGTTATTCTACTTGGCAACAGC AAATTATTTTTATAACCGTTTTTTATTTTTGCATTGTAAATTGTATATTTAAATAACTAATTTGGTCATACTGTTAGGTT ATTTCATAATTTATCATTGGATAGCCTAAATATTATAGTTTTTGTGTATGTGGAGCGAACTTTACTGGTTATGGTTTTGT ATTAACCTCATAAATATGATAACTTAAACAGAACGTACTTTTGTCAATAAAACATAGTTGGTTTACATTAGTCAACGTCT TTTCTTAACCCAACATAAAACATTGATGCAAAATTTAACTGATAGGGCATTCCTGAACAAGCTGATGTGCCAGCAGTTGC CAGATCACCCAGTGTTGGGCAGGCAGAAAACCCATCAGTCCAGCCTCCTCAACCAGCTGTGCCTACTGGTGGGCCCAACA CCAACCCACTCAACCTGTTTCCCCAAGTATGTACTATCTGTGTCTCCCATGCAGTAAAATTAAACAACATTGGGTGGTAA AAATATTAATGTCTGTTTGAATCAGGGCATTCCCAATATGGGTGCAGAGGACAATGCAGGCGACTTGGATTTCTTGCGCA ACAATCAACAGGTGGTTTAATCTTGTTTTTTAGAAGCTAGGCCCCTGTTAATTTTATAGATTTATGTATGGCGCATCTTA ATGTCTTATTCTTTACCATTTTAGTTCCAAGCCTTGAGAGCAATGGTGCAAGCAAACCCTCAAATCTTGCAGGTATTATT GGTACTTGTAGATTCCTTTACACTATAATTAGCAGTTTGGGCCTTAGCTAATTAAGGAATGACAATTTTTTGTTTGTTTC CCATTACAGCCCATGCTTCAGGAACTGGGAAAACAAAATCCTCACCTAATGCAGCTCATTCAAGAGCATCAATCTGACTT CCTGAATCTTATAAATGAACCTGAAGGAGAAGAGTAAGAAGACTATTTTAATTTTTGTTGTATTTTATTTTCATTTTATA TTGTATGAACTTTTCAATGAGCTCCAACTCTTTTCCGCTGACAGAGAATAATTCATATTTATAAATGAATGGTGAGAGCT TAGAAGAAAATTCTTGAATTAAATGAGTTAAAAAGTTCACTAGACACACACTTACAGAGTACAGACCTCTATGGGGCATC AGTAATCCTTCGACCTTGATTATAATTACTAAGGATAAAATTAAACCAGATATTAATGCAGTAATGACATAATATCTGGG ATTTATGGGAATTCATCCTACAAAAGGCTGTTCATTTGTGTAAGATTGATTGTGACTTCTGCTAGTGTTAAGGGCTCTTA ATCCTATATGCGCACAAAAAAGGTTTAACAATATTTCTGGTTTGACGGGAGGATTTTAGGTAAATTGTAATGTTAAAAGT TAAAACCCATGGTGAGAGAGAGCGGGAGAGGGAGGAGGATAGTAGATTAGTAGGTATTGGCTTTATAAGACATCTGGATG CTCAGGCTATTGTGTTATTGTATGACCAGGAACCCATTGGCTGCTGGGATGACTCAGGCCATCACTGTCACCCCTGAAGA GAATGAGGCCATTCAACGGGTAAGCTACTGAAAATACTCTCCATTCAGTTGTTTTAACTCTGACTTTCTTATTGGTGTTT TCCGGCATTGGCTTGATCATGGATTTCTTGGCATCGCTATCAGTTGTTGAATTGGCTATAAGCTATAGTAGTATATGAAA GTTCATATTTATATATGAATTAGATGCCCCTTAGATTTGATGCATCTGATTTAATTTGCTCGAGTTCAATTTTATTCTTG ATGGAGGATGTATTCGAGGGTGAGCCTCTGCGCAATGCTAAGGTTGTTTCCATGTGACTTTCCGGTCACAAGTTAGAGCC ACAGAATCAGCCTCTTGCGAAAAGGCAAGGTAAAGCTGCCTACATTAGATCTACAAAGTGTGTCCGGCTCCTCCCTGGAC CTCGTGCATAGTAGGAGCCTTATAGCAAACTTTTTTTTTGGAGGATGTATTGAGAGAGATTTCTATATGCTTTCTCTCAC ACCCAAAAGGGTGATATTTGTACTTCAATTATTTCCTTCTAGTGTTTTATCTTTATTACTGCCCTCTTTTGTAATAATAA AATGAAAGCTACATGAATTATTGTTTTCACTCTTCAATGAAACAAATAGCAGCATTATATGCAGATTGTAACCATGGCAT TCTCCCCCAGCCCCATTCCAATAGAAAACTGATCCAGACATTTTTTTGCAGCTTGAAGATATGGGATTTGATCGTGATCT CGTGTTGGAAGTGTTCATTGCATGCAATAGAAACGAGGATCTGGCAGCCAACTACCTATTGGATCACCAAAATGAGTTTG ACGATTAGTTGAAATTCTAGTTCATCTTCTCTGACTGTGGTCTTTCTTGTGTCCAGCATTTTTCTGTGCTGGCACTTTAG TTCATTTGTTTCTCTTCTGAACTCGTTGGACAAAGTCTTGATGTTAATATTTCATGTCTTTTATTGTCTTGGGGAACTAT ACCTTTTGTAGGTTATTTGACATTATTGACTAGAGAATAGAATCCCGATGGTTACACAAGGTTATAGGTTTCTTTATTCT TCTCTAGCTCTATATTTTCATTATGTATATCATGCTACTGATATACTGTCATTTTTTTGAAAGGAGTTTCTTTAACCAGT CTTATCTTTGAGTCTATTTTAACAAATTCAAAGTTTCACTTTTTTAACGAACTTCTTTGAATAAAAAATAAGTGGGCGCA TGTATATGAGCACCTTTCTCTGTGTGTGCACTTGC
CDS sequence (LotjaGi1g1v0550600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTAACGTCAAGACACTCAAGGGCACTCACTTTCAGATCCAAGTTAACCTACAAGACTCGGTTGCTGATGTGAA GAAGACTATAGAGGTGGCGCAAGGTGCTGGTGTTTACCCTGCTGCGCAGCAAATGCTTATTCATCAGGGGAAGGTGCTGA AGGATGACACAACCCTGGAAGAGAATAATGTTGCTGAGGATAGTTTCGTGGTCATCATGTTGAGCAAGAATAAGGTATCA TCAAGTGGAGCCTCAACTGCTGCAGCGGCACCACCAAATCCGGTGACGGCTCCCCAACCTGCAAGTTCTGTGCCTCCCAC CTCATCAACACCAGAACCTCCCACTTCAGCTGTAGGACAGGGAGCCTCCAATTCTGAGCAAAGTCCTGTTATAACTCCTC CAACTGCTGCTGTGTCCAGCGTATATGGCCAAGCAGCTTCAAATCTCATTGCAGGAAGTAATGTAGACCCTACTGTTCAA CAGATTCTTGAAATGGGGGGAGGAAGTTGGGATCGGGATACTGTTATTCGTGCTCTTCGTGCTGCATATAACAATCCGGA ACGAGCTGTTGAATACCTCTATTCTGGCATTCCTGAACAAGCTGATGTGCCAGCAGTTGCCAGATCACCCAGTGTTGGGC AGGCAGAAAACCCATCAGTCCAGCCTCCTCAACCAGCTGTGCCTACTGGTGGGCCCAACACCAACCCACTCAACCTGTTT CCCCAAGGCATTCCCAATATGGGTGCAGAGGACAATGCAGGCGACTTGGATTTCTTGCGCAACAATCAACAGTTCCAAGC CTTGAGAGCAATGGTGCAAGCAAACCCTCAAATCTTGCAGCCCATGCTTCAGGAACTGGGAAAACAAAATCCTCACCTAA TGCAGCTCATTCAAGAGCATCAATCTGACTTCCTGAATCTTATAAATGAACCTGAAGGAGAAGAGAACCCATTGGCTGCT GGGATGACTCAGGCCATCACTGTCACCCCTGAAGAGAATGAGGCCATTCAACGGCTTGAAGATATGGGATTTGATCGTGA TCTCGTGTTGGAAGTGTTCATTGCATGCAATAGAAACGAGGATCTGGCAGCCAACTACCTATTGGATCACCAAAATGAGT TTGACGATTAG
Protein sequence (LotjaGi1g1v0550600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLEENNVAEDSFVVIMLSKNKVS SSGASTAAAAPPNPVTAPQPASSVPPTSSTPEPPTSAVGQGASNSEQSPVITPPTAAVSSVYGQAASNLIAGSNVDPTVQ QILEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVQPPQPAVPTGGPNTNPLNLF PQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEPEGEENPLAA GMTQAITVTPEENEAIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDHQNEFDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 75 | 75 | 8.9E-20 | ||
| ProSiteProfiles | 1 | 76 | 76 | 18.693 | ||
| TIGRFAM | 1 | 374 | 374 | 6.4E-108 | ||
| CDD | 1 | 74 | 74 | 8.6789E-29 | – | |
| Gene3D | 1 | 80 | 80 | 3.4E-20 | – | |
| PANTHER | 1 | 376 | 376 | 1.4E-188 | – | |
| SUPERFAMILY | 1 | 90 | 90 | 1.79E-21 | ||
| PANTHER | 1 | 376 | 376 | 1.4E-188 | – | |
| Pfam | 3 | 76 | 74 | 1.2E-18 | ||
| MobiDBLite | 83 | 132 | 50 | - | – | |
| MobiDBLite | 93 | 112 | 20 | - | – | |
| MobiDBLite | 113 | 132 | 20 | - | – | |
| Gene3D | 148 | 198 | 51 | 5.2E-20 | – | |
| SUPERFAMILY | 152 | 205 | 54 | 1.8E-11 | ||
| ProSiteProfiles | 154 | 196 | 43 | 12.716 | ||
| SMART | 155 | 195 | 41 | 5.9E-4 | ||
| Pfam | 158 | 193 | 36 | 5.2E-14 | ||
| MobiDBLite | 210 | 234 | 25 | - | – | |
| Gene3D | 247 | 312 | 66 | 6.1E-25 | ||
| SUPERFAMILY | 252 | 315 | 64 | 8.63E-21 | ||
| SMART | 254 | 297 | 44 | 4.2E-7 | ||
| Pfam | 256 | 311 | 56 | 1.3E-22 | ||
| PRINTS | 282 | 304 | 23 | 5.7E-31 | ||
| SUPERFAMILY | 316 | 374 | 59 | 2.98E-14 | ||
| Gene3D | 323 | 372 | 50 | 2.0E-22 | – | |
| PRINTS | 326 | 342 | 17 | 5.7E-31 | ||
| ProSiteProfiles | 330 | 370 | 41 | 14.981 | ||
| Pfam | 331 | 367 | 37 | 4.9E-11 | ||
| SMART | 332 | 369 | 38 | 4.0E-8 | ||
| PRINTS | 343 | 357 | 15 | 5.7E-31 | ||
| PRINTS | 358 | 373 | 16 | 5.7E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Damaged DNA binding | Interacting selectively and non-covalently with damaged DNA. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Biological process | Proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
Expression pattern of LotjaGi1g1v0550600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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