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LotjaGi2g1v0277900.1

Overview

Field Value
Gene ID LotjaGi2g1v0277900
Transcript ID LotjaGi2g1v0277900.1
Lotus japonicus genome version Gifu v1.2
Description RAD23 UV excision repair family protein; TAIR: AT3G02540.3 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A151RI27|A0A151RI27_CAJCA Putative DNA repair protein RAD23-3; Found in the gene: LotjaGi2g1v0277900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:74961554..74969384) extracted from Lotus japonicus Gifu genome v1.2.

GTCCATAATAAATTTTTCCAAATTAAACACTTTCTTTTCACATCTCAGAACTATTTTTCACTATTAAGTTTCCTTTTCAA TTTTGAATAAAACGAGTTCAGCTCAGTCATTTCGTCACGCATTCGGTTACTCTCTCTTTCGCGTCTTCATTTCGTGCGGC GCCTAAAACCCTTTCCGGATCAGTGAATCGGAGCCTCGCCGCCGGCGAGATTTCCGAGGCTGTTCAGTCGCCAATCGACC ACCGAGGCAGCGACGACGATGAAGATTTTCGTGAAGACTCTCAAAGGATCACACTTCGAAATTGAAGTGAATCCCTCCGA TACGGTTTGTTTCTCCACCAAACTCCTTGTTCTATCGAATTCCGATCGTAATTTATCGTTTCTTGTTTTCCTATGTCGCG AATTGGATTTGGCACTTTGATTGTAGGAGCAGAAGCCTTGAATTTTGGGTGTTAACTCAGTTTTGATGCCTGGTTGTTCC ATTTTTGTTGAATTTGATTGATGCCAATTTAGAAGTAATTTAGTGTGAAATTTAGGTTTTGAATTGATTGCTTTGTGGTG TGTTTTGGAATGGAAACTGATCTGTTAGTTTTTATTTAATTTATTTCCTATTTTCCGCTTCTTTATTTGTCCTTGGATAT TATTAAGTGTAAGAGCACCAGTGGCTAAGTGTTGATGTTTGCGGCATCACTTGGGAATTTCGAACCGGTTTCTACTAGGG CGAAATCTGGATAATTACTTGTTTTGATTGCTATTGGACCTCATGGCCTTGTGAATTATGATAGTTGTGCGCAATTTAAT TTTATTTAGTGCTACAACATATACTTGTATCAATGACTAATGGAACTGTGAATCGTTGGAATTGACATTGTTGTATAACT GAGGCAGCTTGTTGAAATTTTATGAATATTTTTTTGAGGAAAAACCTCTGAAGTAAGGAAGCCTAGCCTTTAAAGGTTCA CAATGAGGGTTTATCAATGTCTCTTGAGCTCATTCAAGTACATTCCTTTCATATTGGCTGCATTGGGATTTGTGTTTTTC CGTTGAAGTTGTGAAAGTTGTCTCATAACGTAACTGAAAACCAAAAAGAAACCTACTTGCGCACTTTATATGCTTTCTCA ATATAAAGGATTCTTACCGAAATTTTAAACCACCCTAGGAGACTGGAAAGAGAGAATTTGGGACTGTTTGCATTTATGTT GAAGCCAATGTAATGCCAACGGAAGTGTCAAGCCTCTTCCACGTTCATTGCATTGGAATGGGTGGTTCCGATTTCCTAGC TAGCTAACGTGCCAAATGAAAAACAAAGGCACTTTGACTCCTCTAAATCGAATAGTTAATAGTAAACCTCAGAATGAAAA TAATGTAGTTACAAGATAATTATGACTTGAAAAAATAATGATTGAGATTGTGATAAAATACATGCAAATATAGAATAAAT AATTATTTAGTTGCTGTAATCTACTCTTGAGTTTTTAATCAACAGTTATTACTGCACACATTTCTTGCTTTATAGGAGGC AACTTTGAAATGGGGTTATCTAAAAAAATGCCTTTTGTAATTCTCTTTCTTTATGCTTGTACCATGTTCTGTTTTCTCTG AACTATAATAACTGGTCTACAATATTTTCTGAATTTGTGAATATTCTTTTCAGGTTTCTGAAGTGAAGAAAAATATCGAA ACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTCAAGGATGGTACTAG TTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGCTGTCAAAGGTAAAATTTTCTTTTATTTATTTCT CTTTTTGAAAATTAATTAGGTCTTTGTACTATCAAAATATATTCAATTATTTGGTTACATATATAGCAACATCTTCAATG CCGAATAGCGGCACATAGTGATTGGCCCCAAAGGTGCTATAGCAGTATAACACATAAAAAAAGTCGTAGATACAAAAATA TGCCATTGTTAAATTAAATACCTGGGTTTGTTGATATTGAGTTAAATTGAAGAGAGGTCATTGTTACATATATCAATTTT TAATAGTTTGTATATATTCATATATTCAGTACTAAATAATAATCTATGGTTAAAATATGCCAGACAAAGAGCTCATCTGG TGAAGGATCTACCACTTCAACTGCACCTTTAGCCAAGGTGAGAACAGTGTACTATGCTATTGAGTATTGTTGTTATTTTT ACTATTATTCAGGTATTCTCTTTTTCAGGGCTCTTACACTACTTGATGGGGGGTTTATTCGTATTTTTGTCTTGTTTTTG CATTTTAATGATACAGTGGAAACTCTGTTATCATAATTTCAATTAGTGTATCTAAATTAAGCATGTTACAATATACAAAT GCAAGCATCCCCTACCTCAATTAAAGGAAAGAGTGCAGCTTTGTTTATTGGGTTTTTTTTATGACTGATGTGTTTGCTTG TTTTTATGTGAATGTGAACTGTTAATTTTACTTCGCTAGAAAAATAAGCTAGTTATTTTATAAGGAAAGAAGAGACTCAA ATAAGCATGTCAGGTTCTAAATATCTAATGATGATATTTTCAGGTTGTCTGAGGTGGCATGTTTAGAAACGATTTGGTAT TCAAACTATTTTAAAAGAATTTAATTTCAATTCCGTAAAGCATGTATCAGGGGAAACTATCACAATTTTTTGTGCATGTA TGCATTTAATATTCAAATAAGGCTACACTAAAGGAAGTAATTGTCATTCAATTTTTTAAGTAGTTGCTGCTGAATACATT CAGTGACTACCTACGTGTTGAATGATTTTTTTTTCCACTGAAATTCGTTATCAGTTTTTATTAATCAAATACTGCTAATT CATTTTCAATTTTAATAAACAAAAGCTGCTAATACATTTTCAATAATGAATCTTTTTAATTGAACGCTGAAGTTGTGTTA TCAAATTGATCCTGTGTGGGGGAGGAAGAATAAGTTCACGATGATAATGATATGGGTAATGTATTTCATACTTGCTAGTG TTTTGACATTAGACGCGAAATCTAACTAGTGATGGCACTGGTTTGATTCGGCTGGTCAAAATGGAAACAAAAGAAGGAAA ACAGGTTAAGAAAATGCATGTAAAACATATAATATAAAATAATACTAAAAAAGTAATCGTAAATTTAATACATGTATGGG CATTAAAATAATTTATTAACATATATTTATAGTAAGTTATATATTAAATACATAAATGGATGAATTCAATTTTATGAAAA ATAAAACTCTTCATTTTTCGAAACCAAGTCCTTTTGCCTTAACTTGATTTTTACTTGTTCAATTCAATCCCATTTATCCA AGTTTTTATCGCTTTTTACCACGGTCTTGCTTTAGTACTGGACTGGAAGCAAAGCTGGTCAAACTTACTGGGAGGTGGTT TGTGCAAGTCTGATTTTTAACACACTATTACCACTATTGTATTGCGAGGCCTTTAGATTTATGGGATTCAAATTTTATGT GGACCATTTGAGCTTTCTGTTCACTGGCTCTAGGATAAGTTTTTCTTACTGTTTTTTTATCTGTATTAGATGGCATTTTC TATAGTTGAGCCTTATGTCATTTATCCATCGTAGTGCTATAGTACACTTCGTCGGCTGATTTTTACGTCAACATCAATGA ATTGAAACTTGAATCCATTTTGATTTATATTGAAGATTTAAGTTCTCTTATAATTTACAGTATTTTGAGAGTTGGAGTAA CTTAAGCTGTAATAGTAAAATTGATATGCCTAGTTGGAACTGTATCGTATTTAATCTTCTGTTTGAGATAAGATTATAAA TAAATGGATTATGGAAAAAATTGTTAACAGCTATTTTGGAGAATATTAGAGAATCTAACTTTAAGTGGTTTGAACATTTG TTCTGAAAATTGTTGAAGCCCAATGGAGTGTAAAATCAGATATCAGATAGTAAGATATGCAGCAGTTTAAGATAGAGGGA GATTTAGAAAAGTTATAGTCAAACTATTAAGAAGGAATCATATATAAGTATTTTGCACGGGACATGATTAATGGTAGGAT ACAGTGATGTCCTTTATTCAGATCACACATAGTAGGAAAAGACTCTTGTTATTGTTATTGATGTGCATTGTAACTTGTTG ATTCATTTCCACTCGTAAAATTATTTAATGAAGAGAAATAACAGAGAAGGGGAAAAGGAGAAAGATATAGAAAATGAGAA CTATGATATAATGTTCACATTATATTTCATAACATAGCAAAGCAAGAGAAATTATATTTCCCCTTTTGACTTATGAAAAT ATAATTATCTTGATTGTAGGTTACGCAGACAAGTGCAGCTCCTACTTCAACCTCTGTGTCACCTGCTCCTCAAACACCTA CTGCAACTAGGGATATGTGAGTCATGATTTTTTCATCACATTCTCTAGTCTGACTTTTTTAGACTTCTTAGATAGTTTTA GTTACAAAAACTCTTTTGTTGTCATATGGACTTTGTTAGCAATTTCATTTCATTTTGACAGGCCTACACCTGTTACTGTC CCAGCAGCTGCCCCTGCTCCAACTCCAGCTCCAGCTCTGGCGCCTACTCCTATATCTTCAGGCTCTGCTGTGTAATATTC TGTTTTATGTTATTATTGGAATGCACTTTTTACTGTTTTTGAAATGTTTGCATTTTGAAGATGCAATTATCTTCCAATTC CAGTTCTTCCTTTTAAAATATCCTATTTGACATAACTTTGTTGAAGCAGGTCAGTGTCTGATGTGTATGGGGAGGCTGCA TCCAATCTTGTTGCTGGAAGCAACTTGGAAGGAATGATTCAACAAATCCTTGACATGGGTGGAGGAAGCTGGGATCGGGA TACTGTTGTCCGTGCTCTTCGTGCTGCTTTCAACAATCCTGAAAGAGCTGTTGACTACTTGTATTCAGTATGTGAAGTTT AGATGATTTTTTTCTTACCTAATGATATTTGTCTACTTTATATTTCAATGGAAGCTCTTTTTTTCAGTTTGGCTATGGTG CAATTTTGATGGAAGTTTACTATTGTATTAGTGGTTTGAGGCTTTCATTACTGTCTTGCACTTTGTTGTTAAAATATCAC TCATAAATGTTAGGGCATACCTGAGCAAGCTGAAGCTCCACCTGTTACTCAAATGCCTGCAAGTGCTCAACCTGGAAATC CCCCAGCTGCTGCTCCACAACTAGCAAATGTTCCTTCTAGTGGACCAAATGCCAATCCTTTAGACCTCTTTCCCCAGGTA GCTGTCTCAAATAGACTTTACCGAGGGAAAGTGAGAGATTTATTTAGATATATTTGGGTGGTGTACTTAATCTCATTTGA CAGGGCCTTCCTAATGTCGGTTCTGGCCCTGCTGGCGCTGGCTCTTTAGATTTTCTACGCAACAGTCAACAGGTATTCTC TATCTGTCTCTGCCACTGTACTTGTATTTGCACTTGCTAATGTTTAAACTATATTTTTCAATTTTGTGCTTGTGTTTCAG TTCCAAGCCTTGCGCGCTATGGTGCAGGCTAATCCACAAATCTTGCAGGTATTCGTCTTTTTCTTGGTTCTATATGTTCT CTTGGTCTATTCTCTTCTTAGAGTTCCCTGAGTTTTGCTATTCTTGCAGCCTATGCTACAAGAACTTGGCAAACAAAATC CCCATCTTATGAGATTGATTCAAGATCATCAAGTTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGCGGTGAAGGG TGAGGGATAATCTATATTATGCATTTTCATTCTGTTTTGTTATTTGTTAAGAGAACTACAGGGTGGAGTAGGGATATGTG GGATGAAACAATAAAAGAATATTCACTAGTGGACCCTGAGCATAACAGAATAGACAGCTGGCAGTGTGTGAACGGAGAGG GTCTTGACAGGGAGAAAGCTGAATGTTTGTAGGGAGAATATAGGGGATTTTGATAAGAGGAGAAATTTGGGGTAAACTTG GTGCCTGCTGGCCTGAGCGGAGATTGTTATTAAGCTTCCTTTTTGTTGGATAATTATCATTCGGATTTTAGAGATTTTCA GGTCCTATCATTATTATATTTTTCTATAAATTGATGTCTAGTGGCTTAATTTGCTGTCATGATACTTGATAGATACAGAC CACCTAATAAGGTGCATCATAGGAGAAATAAGAAGTAAAAAGAGTTTGTTTTGGGGAAGTTGGAATTCTGTTATGGAGAG AACTAGCCTCTGAATGCCAGTAGCTTGTACCCATATTATTTCATTCATCAATAACAGTTTCCTCTCTTCTCTCTATATAT TCTATGATTCTGAACCTTTCTATCAATATTTCAGGAATATTCTAGGACAGCTGGCTGGTGCCGCCATGCCACAAGCAGTG TCTGTGACCCCTGAGGAAAGGGAAGCAATTGAACGTGTAAGTTTATCCTCTTGTAACATTATAGATGTTGTTTTCCTGTC TAACTTCCTCATAACAAAGGAAAACATTAGTTCCATTTTAAACTGCCTAGTTTCCATTTCATCAGTGTTTTTGTTTTGTT TTTGCCCTATTTGATGATATATAATTCAACTATATGATGTGTGGTATGAATAATGCCGGAGCATATAAGAGTACTGCTAG TTTCAAATTCAAACCTACACAAACAGTGCAGTTGGTTTCCTTTTAAGTTAGCTCAATTGAACTTTCCCTTTTAAACCTAG CTCGAATCATTGATTCTCTACAAGTTTGTAACATCTGAGTGAAGCATTTTACATTCTGTAAAGTTTAAACAACTTCAAAC ATAACTTATATAGATCTGGATTAACAGCACTGTTACAATTTTGTCCATTCCTTTCTAAGTGAATTGGCCTCTTATAAGGA ATTGTTACTCTTGCGTGTGGTTTAAGACTGAAATACAGATTATAACAAATTCCTGTGTAATAATATATAATTTCCATGAA TTGTGATCTTTATTCTTCTACCCCAGCTTGAAGCAATGGGTTTTGATCGTGCAACTGTCTTGGAGGTGTACTTCGCCTGT AACAAAAATGAGGAACTTGCTGCCAACTACCTTCTGGATCATATGCATGAGTTTGATGAACAATAAATCTTAACATGTTG TCAAAATATTTCTTGTTATGTTTCCATTTGATGAGTCTTTATTGTGTAATGTGGTAATGTACGATAATGACAAATCTCCA ATGGACAGTAATGTTTTAACCACCTCTGCATTATTATCCATGTATTCATCATTGTCTATATACATAACTGTCTGGCTTTT ATTATTGTTTATGGTGCAACCTGCCCAATGATGAAATTTTAAATACACTGGCAATTGGCAAGTCTAGAAGTGCAATAAGT ACGAAAGTTTTCAAGCCTCTTGTTTAGTGTTGATGAGGTTTTCTTTGCTCACAATAATGGAATAAGGAATTGCCCAGGTT TTGTTTCCACACGATAGGGTTTTCCTCGTTAGTGTTGGATGGGATCAATTGGTTTTTTTCACTCCAATAAGGAGTAAACT CAGGGTTCAAAAGATTTCTTCCTGTTGACAGAGAAACAAAAGATTTATTTTTTAATTATTTTACCAAAACTTACTCAAGT ATTAAGCTGATTATTAAGATTAATTTTACTTTTTTTATAAATGCTGTTAACATCTCCCTGATGGATTAAAGATCCTCTAT ATGCTAGAAATTTTGGACATCTACATAGCACGCTACTTGTCGTGGCCCAAGATCCCACACAAGCTTTTTGTAGTTTAATT TTATTTTATTACATTTAATTAAATCCTTTCAAAAGAAGTAAATTAATTCTTGAATATTTTAAAAATTCTTT 

CDS sequence (LotjaGi2g1v0277900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGATTTTCGTGAAGACTCTCAAAGGATCACACTTCGAAATTGAAGTGAATCCCTCCGATACGGTTTCTGAAGTGAA GAAAAATATCGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTCA AGGATGGTACTAGTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGCTGTCAAAGACAAAGAGCTCA TCTGGTGAAGGATCTACCACTTCAACTGCACCTTTAGCCAAGGTTACGCAGACAAGTGCAGCTCCTACTTCAACCTCTGT GTCACCTGCTCCTCAAACACCTACTGCAACTAGGGATATGCCTACACCTGTTACTGTCCCAGCAGCTGCCCCTGCTCCAA CTCCAGCTCCAGCTCTGGCGCCTACTCCTATATCTTCAGGCTCTGCTGTGTCAGTGTCTGATGTGTATGGGGAGGCTGCA TCCAATCTTGTTGCTGGAAGCAACTTGGAAGGAATGATTCAACAAATCCTTGACATGGGTGGAGGAAGCTGGGATCGGGA TACTGTTGTCCGTGCTCTTCGTGCTGCTTTCAACAATCCTGAAAGAGCTGTTGACTACTTGTATTCAGGCATACCTGAGC AAGCTGAAGCTCCACCTGTTACTCAAATGCCTGCAAGTGCTCAACCTGGAAATCCCCCAGCTGCTGCTCCACAACTAGCA AATGTTCCTTCTAGTGGACCAAATGCCAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCTAATGTCGGTTCTGGCCCTGC TGGCGCTGGCTCTTTAGATTTTCTACGCAACAGTCAACAGTTCCAAGCCTTGCGCGCTATGGTGCAGGCTAATCCACAAA TCTTGCAGCCTATGCTACAAGAACTTGGCAAACAAAATCCCCATCTTATGAGATTGATTCAAGATCATCAAGTTGATTTC CTTCGCCTGATAAATGAACCTGTGGAAGGCGGTGAAGGGAATATTCTAGGACAGCTGGCTGGTGCCGCCATGCCACAAGC AGTGTCTGTGACCCCTGAGGAAAGGGAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAACTGTCTTGGAGG TGTACTTCGCCTGTAACAAAAATGAGGAACTTGCTGCCAACTACCTTCTGGATCATATGCATGAGTTTGATGAACAATAA 

Protein sequence (LotjaGi2g1v0277900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKIFVKTLKGSHFEIEVNPSDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKSS SGEGSTTSTAPLAKVTQTSAAPTSTSVSPAPQTPTATRDMPTPVTVPAAAPAPTPAPALAPTPISSGSAVSVSDVYGEAA SNLVAGSNLEGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPVTQMPASAQPGNPPAAAPQLA NVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDF LRLINEPVEGGEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDEQ 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
TIGRFAM 1 397 397 5.4E-117
Gene3D 1 80 80 2.1E-23
PANTHER 1 398 398 9.7E-208
ProSiteProfiles 1 79 79 20.283
PANTHER 1 398 398 9.7E-208
SUPERFAMILY 1 79 79 1.27E-22
SMART 1 75 75 1.0E-23
CDD 1 74 74 4.81339E-32
Pfam 3 76 74 3.4E-20
MobiDBLite 96 132 37 -
MobiDBLite 96 120 25 -
Gene3D 162 212 51 2.8E-21
CDD 163 212 50 1.00065E-30
SUPERFAMILY 166 220 55 7.81E-13
ProSiteProfiles 167 210 44 12.185
SMART 169 209 41 1.7E-4
Pfam 172 207 36 2.7E-14
MobiDBLite 218 237 20 -
Gene3D 263 328 66 1.3E-25
SUPERFAMILY 269 334 66 1.96E-21
SMART 270 313 44 5.2E-5
Pfam 272 327 56 2.7E-22
PRINTS 298 320 23 2.0E-33
SUPERFAMILY 340 397 58 5.11E-15
Gene3D 346 393 48 1.1E-23
PRINTS 348 364 17 2.0E-33
CDD 350 392 43 1.067E-23
ProSiteProfiles 351 392 42 14.547
Pfam 354 389 36 1.3E-13
SMART 354 391 38 1.7E-8
PRINTS 365 379 15 2.0E-33
PRINTS 380 395 16 2.0E-33

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Biological process Nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Biological process Proteasome-mediated ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0277900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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