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LotjaGi5g1v0340800.1

Overview

Field Value
Gene ID LotjaGi5g1v0340800
Transcript ID LotjaGi5g1v0340800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description RAD23 UV excision repair family protein; TAIR: AT3G02540.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A0L9U0N9|A0A0L9U0N9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0340800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:65826929..65831196) extracted from Lotus japonicus Gifu genome v1.2.

ATGAAGGTTTTCGTCAAGACTCTGAAGGGCTCTCACTTCGAAATCGAAGTCAAGCCCCAAGACACGGTTTGTTTCCCCCT TCTTCTTCCTTCCCTTTCCTTCATTCAATTCAATTTCGTACTGAATTTCCGTTTCGTTTTCTGTTCTTCAACTTCCTTCG CAGTTTCGGCTCCAGAACCCTAAATCTTAGTGTTTGATTAGGGTTTAATTATTGTTTCGCTTGTTCTATTTCTTGTTGAT TGTTTGATGCGAATTTGAATTTGCTAATACGTAGATATGAAATTCAGCTTTCGAAAGTTATGTGTACATGTAGAGAATTA ATCTGTTTTCGGAAGCTTGATTGACACGTGATAGTGAATCAGTTCCACATTGTGTGACACTAGTTCACATCCATGGTATA ATTTAGCTTTGACTTTATCAAATTAATGTGCATTATCTGTCTCTTTCAAGGTTGTAAGTTTCTGTTAGTTGAATTGTAGT TCTACAAATGTGTCAATTCTTGATATTTTGGTTGTGTGGGGTTTATGATTCGCTTCGACAATAAGTTACTTGCTACGTTA GTTATGGACTTGTAATTGCGGATATTTTTTTTTCAGGTTTCGGATGTGAAGAAAAATATTGAAACTGTTCAAGGTGTGGA TGTCTATCCTGCCGCGCAGCAAATGCTTATTCATCAAGGGAAAGTTCTTAAGGATGGTACTACCTTGGAGGAAAATAAAG TAGCTGAAAATAGTTTCATTGTGATTATGATTTCCAAGGTAAACCTTTCTTTTTGTTTTTATTTTGCCCTTCTGAGAACT GCATTGATTTTTGGACTTGTTAAAGTATTAGGACCTCATGTTCAATAATATCCCGCACAGTATTTATTTGGGTTTTCATC GAGTGTAATGGCGTCAAGTAATGACGTCAGTTGCTCCATATAGCCGACCTCACGTCGGTTTCTGTCTGTTTTTGTAAATG CGGTTGCGGATATTGCGGTTGCAGATATTGCGGTTGCTGCGATGCGTTTTGCGTCCGTTGCGGCGTGATTTATTTTACGC TTGCACATTATGTAAAAAAAACTTAAATTTTTTAATTTCATCTTTAGTTTCTCTACACAATTAAATAGTTCATTTCCTCT AATTAGATTCTCAAGGTCTTTTAGTTTCCCTCCCAAGTTTCAATTCCCTTTTATATGTTTACCTCAAAACTTTTCACATT CCGTCCCTCATTCCCTCATTAGATTCTCTCCCATAATTTTATCGTTTTCATTCCCTCCAATTATGGTTTCAGATGAGAAG TTTGACTTTAATTATAAAACAGTTTCCGTTTTAACACATTAATTAATTATGCACTTGAGAAAATTGAGAACCACAACCAC ACATCACAAAAAAAAAGGTGAATCACAATTCAATCGCATACAAATACTCTTACTGATCAGTTTTTGATTTCTTTGATCTT TCCCCCAAATTCCAAACATTCGATCAATTAATACCCACACAACTACACTCTGCCTCTATGACTATCTTTTCTTTACCCCT ACCAAATCACAAACAACCCTCACCCTCCTTATCTCTATGTTCTCCATCGCTCACACGCACACCAGCTTTGTCGTCTCGCT CTGCACCAGAGACACGCTGACAAGGTCTCCACCAGCCACCAGATCAGACACCCAGATCAGAGACAGATCGCCAATTCTTG AGGATCTACTGCATACAAGAAAGGAAATTAAATTTGGTCAAGGTTTCAGAGCTTACCGTTAGCAGAACCTGCGGATTACG TAACAGAATTGATGTTAATTGAACGACCAGAATTTTGGCTGGTTAAGAACTTTCATAAATTGCAGGTTTTCCCAGTTGCC CTTGGGTCTTTGGTTTTTCCTATTTAGACGTAATTGTTTGACAAGCCCCTAAAATGCAATGTGCATTTAGGGGGTACATC CACCCTAACGTGACTGGGTTTATTTATATTGACTTAAATTCATAAGAAATCATTTTTACCTCTCTAAATTTTAATGCTTA TTATTTATTGAGTACTGAATCAGAACTATCTGATTAAAATATGTCAGAGTAAGACTCCGTCTGGTGAAGGATCTACTACT TCAGCTGCACCTTCAGCTAAGGTGAGAGCATTTTGCTATGTTGTGAATATTTCCGATGTTAATATCATTTTGGCTCTCTT TTCTGGGACATAGTAAGATATATTCCCATTTCCAACTTCTGAAAGTATTATATTACCATGTATCATTGCAGGCTCCACAA ACAAGTGCAGCTCCTACTTCAAACCCTGTGGTGTCAGTGCCACTTCCAACTCCTACTGCAACTGGGGCTCCGTGAGTGAT TGTCATTCATGGCTTTTCCTCTAGTTGATTAAATAAATTTTGGTTTCTACTATCTTTACATGTAATGTATGCTGTCTGAA CTGAAGCTTCATTTCAATATGACAGGCTTGCACCTGTTACTGCAGCTGCACCTGCGGCTCCAGCTGCGACTCCTGCTCCA TCTCCAGCTCCTGCTCCTATATCTTCGGGCACGGCTGTGTAAGAATTTTGTTTTCTTCAATGTTTGGAATGTCATTTTTT TGGTCCCTATAATTTTGTACTTGGAAAGATGGTAAACTCTTCAATTCTCATTATTCTTCCTTCAATACTTGGTTGTTGAA TAGAAACTTTTTGAAGCAGGGAAGGTTCTGATGTCTATGGACAAGCAGCATCCAATCTGGTTGCTGGTAGCAACTTGGAA GACACAATTCAGCAAATTCTTGATGTTGGAGGAGGGACCTGGGATAGGGATACTGTAGTCCGGGCTCTTCGAGCTGCCTT CAACAACCCTGAGAGAGCTATTGAATATTTATATTCAGTATGTGGATATTTTAGCTGTTTAATTTATTACTTGATGATAC TTATCTGCTATATATTTTAATGCTGTTTTTTTACTCAATTTGGCATCCTATCCTGCATGGTTACTTTCTTTTTTAAATAA AATACCTTTTATAAATTTAGGGAATCCCCGAGCAAGCTGAAGCTCCACCTGTGGGCCGTGTGCCTGCAAGTGCACAACCT GCAAATCCTCCAGCAGCTGCAGCTCCGCAAGCGGCACAACCTGCTCCTGTTACCTCAAGTGGGCCTAATGCTAATCCTTT AGACCTTTTTCCACAGGTAGCTATTCTTTTTCTTTTTTGTTGAAAATAAATGAGTTCTTTCAAGTGGAATACTTAACTTT GTATTACAGGGCCTCCCAAATGTTGGTTCTGGTGGTGCTGGTGCTGGCTCTTTAGATTTTCTTCGCAACAGCCAACAAGT ATTCATCTTTCCCTGTGCTTTAAATTGTACTAAATTTCTTACTTCCTAATGTATATTTTTATTAAGTTCTTCAATTTTCG TTTGCTTCGCAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGGTTTTCTTCTTCACCTTAGT TGTTATATTTATAACCAACACTCTTGTTTAGAATCCGCTGATTCTTTTTCTTGCTGCAGCCTATGCTACAAGAGCTTGGC AAACAGAATCCTCATCTAATGAGATTGATTCGAGATCATCAAGCTGACTTCCTTCGCTTGATAAATGAGCCTGTGGAAGG TGGCGAAGGGTGAGGGATCATTTGTTTGCCATTTTTTGCGGATGCAAATACTTTCTTGTCTTTGTATCCTTTTTTCCTAT CAATATATGTCACAGTGCCTTAATATTTTGCTGTTAATATCCTTTATAGGAACCCATTGGGGCAGCTGGCTGGTGGCATA CCACAAGCAATAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTGTAAGTTTGACCGCATTGCTATATAAAGCATT AATTATTAGATTATGTCTGCTAGTGATTCTGTAAAGAATAGTGTTAGTTCCACAATTTATAGTACACAATTGTTAATCAG GCTTTAAGCACAATTAGTTCAGATTTGACTCCCCTACTGTTCCTGAGGCACATCAATGTTAATGTTCTAAAATGGGTTTA TCTCTTTTTAAGTGGGTAAGGGTTACATGACAAATGATACTGGTATTTTGGATAGATCCCTGCTGTTTATGAAGAACACC ATGGGTTAACTTGCTAACCACTTCCGTAATTTGTTATTCTAAGTTATGATGTTTGTTTTGTGCCACAGCTTGAAGCAATG GGTTTCGATCGTGCGATTGTATTGGAGGTGTTCTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGA TCACATGCATGAGTTCGACGAACAATAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0340800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAGAATCCTCATCTAATGAGATTGAT TCGAGATCATCAAGCTGACTTCCTTCGCTTGATAAATGAGCCTGTGGAAGGTGGCGAAGGGAACCCATTGGGGCAGCTGG CTGGTGGCATACCACAAGCAATAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTCGAT CGTGCGATTGTATTGGAGGTGTTCTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCA TGAGTTCGACGAACAATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0340800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNPLGQLAGGIPQAITVTPEERQAIERLEAMGFD RAIVLEVFFACNKNEELAANYLLDHMHEFDEQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.10.540
1 43 43 2.1E-16
IPR036353
PANTHER
PTHR10621
1 111 111 1.2E-68 –
PANTHER
PTHR10621:SF40
1 111 111 1.2E-68 –
SUPERFAMILY
SSF101238
1 47 47 1.96E-15
IPR036353
Pfam
PF09280
1 41 41 3.3E-16
IPR015360
PRINTS
PR01839
12 34 23 9.0E-35
IPR004806
SUPERFAMILY
SSF46934
47 110 64 6.72E-16
IPR009060
Gene3D
G3DSA:1.10.8.10
59 106 48 2.0E-23 –
PRINTS
PR01839
61 77 17 9.0E-35
IPR004806
ProSiteProfiles
PS50030
64 105 42 14.643
IPR015940
SMART
SM00165
67 104 38 2.2E-8
IPR015940
Pfam
PF00627
67 102 36 4.7E-13
IPR015940
PRINTS
PR01839
78 92 15 9.0E-35
IPR004806
PRINTS
PR01839
93 108 16 9.0E-35
IPR004806

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003684
Molecular function Damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006289
Biological process Nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of
GO:0043161
Biological process Proteasome-mediated ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0340800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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