Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0414900.3

Overview

Field Value
Gene ID LotjaGi2g1v0414900
Transcript ID LotjaGi2g1v0414900.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91266808..91268964) extracted from Lotus japonicus Gifu genome v1.2.

ATGTTTTTCCACATAGTGCTGGAACGAAATATGCAGCTGCACCCACGTTACTTTGGTCGTAATCTTCGTGATAATCTTGT TGCCAAGTTAATGAAAGATGTTGAAGGCACATGCAGGTGATTGATTATCTCAGTATTTTTCTTCTTACTAGAAAATGGGT GGTGAAAAATGGAAAAGAACAGGTTTTATATGTATTCCATAATCAGGGAACATTAGATTGAAGGTTTTCATTCATTAAGA TAGAAACATTTGCAATTAAAATAAGGGGCCACCAAAATAATAATGAAACCCCAAGGCCCCAAGCTAACAGGGACTTTAAT CCCTCTATGAGTCGAGAACAGAGAGAGCCTCCTATCTTGGCCCACCGACAGGGATTTTATTTTATGCAGTTTTGCTTTTG ATTTGTGTTCCTTTGAACTACTTTTAACAGGTATCTCTAGTTTCCACATATATAAAGGGGTTTTTTTGGGGGTTGGGGGA TAATGAAACAATTATCAACATGCCCTCCCCAGTTAAATATGTTTATAATGGTAACTCCATCCATGCATTTAATTGGAATG ATATATAATTTTATTCAGCGTATAGTATTTATTTCTTGGACATTGGACATATGTAACATATGGATTTTCAACCATCATGT AGCGGTCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAGACATTGGAAAAGGGTTAATTCTTGATGGTACTGGGTC TGTGACATTTCCGGTTAAATACCGATGTGTTGTCTTCAGACCATTTAAGGGAGAAGTTTTAGAAGCTGTTGTTACCATGG TGAACAAGGTTTGTACAAGTCCTCTTTCTTTGGTGTAATTTAGCTATCTAACAATAATGTGTGGATATAGTGGTTTATAA TTGTTTGAGTTCTGTCTGTACAGATGGGATTTTTTGCTGAAGCTGGACCTGTTCAAATCTTCGTTTCAAACCATGTAAGG TTTTTTTCTTTTATAACCTTTGAGAAATGGTCTCTATAATCAATGTTATAAATTATTTCTAGAAGGTTGTTATCACTGTT CTTTGTTTTACCCACTAAAATTATGTTTCTTTATTATTATTGTCAAATGTGATAGAAACTGGGCCAGAACTCAGAATATA CAGGAAGAAAATGTCTTTATTCACAAGTGAATCGTTGATATAGCCAAGTATTTTAGAGACCTGGCACTCTCCCACTCTAG ACCCCTTTAATTTCCAAAACAAAAGATAAAACTCTCTTAACTTTCTCCCCCTTATTTATACTGTCTCATCTTTAACAAGT GAATCGTTGATATAGCCAAGTATTTGAGAGACCGCACTCTCCCACTCCAGACCCCTTTCCAAAACAAAAGATAAAACTCT CTAAACTTTCTCCCCCTTATTTATACTGTCTCATCTTTAACTAAAACCCTAGCCCCACCCCCCCTGCAATATGTGCTGTC TTCATTTGTTAGTATTTGCTAGTACAAACTAGATTAATTTATATAGTGTTGACTGATGCATGCATACCGTTTAATTTTAA ATCACAATGTGTTCTTTATTTTTGCATAAATCGTTGACCTTTTAAAGTTTTAGATATGATGTATCCAATGAATTTCAGAA TCGCTAAGTTTTATTTTCCATTTTCTTTTGTAGTTTATGTCATTACTATGCAACATGATATGTTTCAAGTTCAGCTTGTA CCTTTAAATATTCTTTTGTCGGTTAAGACCTTTTTTTCCCTCTCAGTTGATTCCAGATGATATGGAGTTCCAGTCTGGAG ATATGCCAAATTACACTACTTCAGATGCATCAGTACGAATCATTTATAACTTTTTGTTTGAAAGAAGAGAGCAAGATTTT TTGTTTCGTTTTGTGGATTCATTATCATGTTTTTTTCCTTTGTATTGTTGGTATTAAATATTAATCAATTGGTCTTTTGC AGGTTAAGATTCAGAAAGATAGTGAAGTGAGACTTAAGATAATTGGGACTCGAGTAGACGCTACTGAAATTGTATGCCCA TATACTTTACACCTTTTACTTAGTTTTTATGAATATATATTACATCTTTTACTTTGTCTTCATGAATGCTGTTAAAGCCC CATCAGCTTTATGCTAAATACTGCTTTGAAACGTTCAAATTAATAGGATATGAAAGCTGTTAATAGCAACAGTATAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0414900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTTTCCACATAGTGCTGGAACGAAATATGCAGCTGCACCCACGTTACTTTGGTCGTAATCTTCGTGATAATCTTGT TGCCAAGTTAATGAAAGATGTTGAAGGCACATGCAGCGGTCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAGACA TTGGAAAAGGGTTAATTCTTGATGGTACTGGGTCTGTGACATTTCCGGTTAAATACCGATGTGTTGTCTTCAGACCATTT AAGGGAGAAGTTTTAGAAGCTGTTGTTACCATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTTCAAATCTT CGTTTCAAACCATTTGATTCCAGATGATATGGAGTTCCAGTCTGGAGATATGCCAAATTACACTACTTCAGATGCATCAG TTAAGATTCAGAAAGATAGTGAAGTGAGACTTAAGATAATTGGGACTCGAGTAGACGCTACTGAAATTCTTTATGCTAAA TACTGCTTTGAAACGTTCAAATTAATAGGATATGAAAGCTGTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0414900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLILDGTGSVTFPVKYRCVVFRPF KGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDASVKIQKDSEVRLKIIGTRVDATEILYAK YCFETFKLIGYESC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF88798
1 78 78 2.88E-23
IPR036898
Gene3D
G3DSA:3.30.1490.120
1 80 80 1.9E-33
IPR036898
PANTHER
PTHR12709
1 158 158 3.5E-83 –
PANTHER
PTHR12709:SF4
1 158 158 3.5E-83 –
CDD
cd04329
2 81 80 5.69342E-41 –
Pfam
PF03876
9 77 69 8.2E-19
IPR005576
SUPERFAMILY
SSF50249
78 156 79 2.45E-15
IPR012340
Pfam
PF00575
78 156 79 1.9E-16
IPR003029
Gene3D
G3DSA:2.40.50.140
81 161 81 1.7E-28 –
CDD
cd04462
81 156 76 1.32235E-37 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0414900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…