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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0020200 |
| Transcript ID | LotjaGi2g1v0020200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:7382196..7386040) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTTTCCACATAGTGCTGGAACGGAACATGCAGCTGCACCCACGTTACTTTGGCCGTAATCTTCGTGATAATCTTGT TGCCAAGCTAATGAAAGATGTGGAAGGAACTTGCAGGTGATTACTTTAGTATTTTTCTTATTCCTAGAAAATGTGATGAA AATGGAAAAGAATAGGACATGCAATTTTTATTTTTATTTTCTATAATTGGGGAACACGAGTTTAACATCTAATGATTTCG TTGATTATGAAATTATAGTTTAAGTAAATTAGTTGTTCCTTCTTGTTGCTCTCTGCCATAATCAAGCTTCACCTCCTGCT TTGGATGGTCTTCTTTTTCCACCGGAATACTAGCCACGATTATCCATTTTCGCGTTCCCAAAGTCAATGTGTTTGTCCAT GTATCCTCGGGTTCTGCCATATACTCGGATGTTTCATCAGTGGTGAGCCCATTGCTCATATCATTGATGGTACTATGGGC TTTTACCATGTTGTCCAAGCGACCTCCTCCAATGTCGTCGGACATGGAAACTTGTGCACTTGCTGAGTTAGGCATTTACT CTTTGCCGCCTACAATGGGTTCTTGGAGGAGATGATTTCGTCTGCTATTAGAATTTGGGAGGCCTAACTCAACCCAAAAG CTAGCTCTAGAGTTACAGGTTTCTCTACCCTTTATAGTAAAGGCTATTTATGTCATATCTCTAGCCAAAGTGAGACTTCT AAAACACCCCCTCACGCCCTGAACATCTGGAGCGTGGAATTTGCAGGATTTGACATCTGCGGGTGGCCCAAATATGGGAG GTCTCCACGGATCTAGGATAAGCTCTAATACCATATTAAAATATGGGAGACCTAACTCAACGCAAAAGCTAGATCTAGAG TTGAGGGTTTCTCTACCCTTAATAAAGGTTGTCTATGTCATATCTCTAGCCAATGTGAGACTTCCTACAATGAAGCTTGT CGAATTTTATTAGCTTCCAACCTTGAGGACATGGTTGATTTTTTGAGGGGAGTATTGTTAGGATTCTAAATATCTAGGTT TAGTTTATTTTAGGAGTTCATATTTTATTTTAGGAGTTGATCTATTATATTGGTTGGGTTATCTTTTAGATTAAGAGTAT GTTTTAATTTAGGAGTTATCGCTTATTTTTTTAGTCAATCTTCTCTCTTAGCGGTTAAGTTTATCGTTATTAGGATTAGT TATTATAAATTGGATTACCTTCCTTAGGTTAGAGCGTGATTGGAGTAGTGAGTATTGTAAAAGGGTTTCACCCTTGGAAG AGATTTTCCCTTGTAAGAAGGATTTCCTTCGTGTGTCTTATTTTTCTAATTTAAATGTATCAGTCTTTAATTCTGAAAAT ACCAAAGAAAAATATACTCTTTTGTCCGTATTCCTCTATTATTTGGCTGTTAGGATTTACTGGTTCTTGCAGAATGATTA GTTTTCAGGATTCTTAAATATGAGAAAGTTAATAGATTGCAACTTGAAGAATGAGTGCTCAATTGTCTTTGATTTCGCTC TCAGTTCTGTTTTTGGTTATCTATTAAATAAGAACAATAAAATAGAAGTGCAGCTTGAAGGTTACCTGGATAGAAACATT TGTTATTCAAATAAGAGGCCACCAAAATAGTAATGAAACCCCAAAGCCCCAGGGCTAACAAGGACTCTAATCCCTCTTAG TTGAGAGTGCAGAGCTCCTTTCCTGACCCACTGACAGGACTTCTTGTTATCCAGTATTGCTTTTGCTTTGTGTTTCTTCA ACTATTTATAATATATATCTCTAATTTCAACATACATAAAGGGGTTTGTTTTTTTTTGGGAGGGGGGGGGGGGTTGGGGG ATGATCAACATGCCCTCCCTAGTTATATATGTTTATCATGATAACTTCATCTGTGCATTTGATATGAACAGTATGTAATT CAAACGGGAGGAAAGTATTTAGCGTTTGGACATGGGTAGGATGTAACATATGGATTTTCAAATATTATGTAGTGGTCGGC ATGGATTTGTGGTGGCGGTTACAGGGATAGAAAATGTTGGAAAAGGGTTAATTCGTGATGGTACAGGGTTCGTGACATTT CCGGTTAAGTACCAATGTGTCGTCTTCAGACCATTTAAGGGAGAGATCTTAGAAGCTGTTGTTACCATGGTGAATAAGGT TTATATGTTTCCTTTGTCTTTAGAGTAATTTAGCTGTCTAACTGCCATGTGTAGATAACTGGATATAGTTATAATTGTTG AGTTCTGTCTGTACAGATGGGATTTTTTGCTGAAGCTGGACCTGTTCAAATCTTCGTCTCAAACCATGTAAGGTTTTTTA TCTTTCATAACCTTTGAGAAATGGTCTTTATAATCTTAATGGTATACAGTAATATCTAAAAGGTTATTATTGTTCTTCGT TTTGTACACTTCCTGGATACGCTTCAACTCGTACCTTTTAAAAGGGACCTTTTCTAAAAGGTTATTAAATATAAGTAGTG ATAGGAACTCAAGGTTTGGGGTTAGTTAGTTAGTTAGTTATACTTAGTGAGTTAGTTAGAATGTTGTTGAGGCATTTAGC CTATAAATAACAGACATTAGAGAGTTAGGGGTATCTTTGTATTCAGTTAGGAATTGGGTTTAGAAAGAGAAGAGAAGTGG TTCTCTTTCTAGGGTTAGAGAGGGTGTTTGGTATCTCTCTCATGTATCTTCCCCCTAATCCCCAATTGGGAATTAGGGTT CTATCAATAAACTACTGCTAATTTTCTGGTTTCTATCAAGTAGCCTATTTTGTAATAGGATACGCTTCAACTCGTACCTT TTAATATATTTTCATTTGTTAAGACCATTTTTTCCCTATCAGTTGATTCCAGATGATATGGAGTTCCAGTCTGGTGACAT GCCAAATTACACTACTTCAGATGGATCAGTACGTATCATTTATATCCTTTTATTGGAAAGAAGAGAGCAAGCTGTGTTTT TCTTTTGTTGATTCATTACATGTTTTTCTCTTTAATGTTTTTGGTAATCAATTGGGTTTTTGCAGGTTAAGATTCAGAAA GATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACCGAAATTGTATGTCATATGTCATATATATTACA TCATTTACTTTGTTTTTATGAGTATATATTACATCTTTTACTTTGTTTATATGAATGCTGTTAAGCCCCACCAGCTTTAT GCCAAATATTGCTTTGAAAAAATCAAATAATAGGATATAAAAGCTGTTAATAGCAATATATCAGATTCAGCTTTTGTTTA TAGCTCTCTTTGCTATTATTAGTTCCTCAGAGAAGAGCCTTTTAAGTTCATGCTATTTTAACGTTTATCTCATGTGATAG TCACTGGCTTATCAGTAGCGGTTTGTGTATATCATAAAAGCAAGATGCAGTTTTACTTTATTAGTAAGATGCAGAACACA CACTTGTATGACGAGAGAAAATAATTATCATCATAAATCCTCCAAAATTCTTGAGTTACTGTATGCACTGAGAAAATTAT GATATTGTAGCACCTTTTTTGGTGTTGCATGTCTTACTATTGTTCCTATCATGATTATCTTGTATGCTGTATGAAGATAT ATCTTCAAGAATTTGATAGTTTGTGCATGCACTTGCTTGACGGTACTCCTGCACAAGTAGTCAAGTACAGAAATTAATTC GCCTTTTTTCTTTGGATATATGTACATTTGAACTTTTAGGTTCCAATGTCTTCTGGTGCTCATTTATTAATACCGTGCAT TACCTTTTTTTTTCTTTTACAGTTCTGCATAGGAACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGTAGCAA TCTAA
CDS sequence (LotjaGi2g1v0020200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTTCCACATAGTGCTGGAACGGAACATGCAGCTGCACCCACGTTACTTTGGCCGTAATCTTCGTGATAATCTTGT TGCCAAGCTAATGAAAGATGTGGAAGGAACTTGCAGTGGTCGGCATGGATTTGTGGTGGCGGTTACAGGGATAGAAAATG TTGGAAAAGGGTTAATTCGTGATGGTACAGGGTTCGTGACATTTCCGGTTAAGTACCAATGTGTCGTCTTCAGACCATTT AAGGGAGAGATCTTAGAAGCTGTTGTTACCATGGTGAATAAGATGGGATTTTTTGCTGAAGCTGGACCTGTTCAAATCTT CGTCTCAAACCATTTGATTCCAGATGATATGGAGTTCCAGTCTGGTGACATGCCAAATTACACTACTTCAGATGGATCAG TTAAGATTCAGAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACCGAAATTTTCTGCATAGGA ACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGTAGCAATCTAA
Protein sequence (LotjaGi2g1v0020200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFPVKYQCVVFRPF KGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIG TIKDDFLGVINDPVAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 78 | 78 | 1.07E-22 | ||
| PANTHER | 1 | 169 | 169 | 6.5E-91 | – | |
| Gene3D | 1 | 80 | 80 | 1.3E-33 | ||
| PANTHER | 1 | 169 | 169 | 6.5E-91 | – | |
| CDD | 2 | 81 | 80 | 2.28532E-40 | – | |
| Pfam | 9 | 77 | 69 | 1.2E-17 | ||
| Pfam | 78 | 156 | 79 | 1.7E-16 | ||
| SUPERFAMILY | 79 | 169 | 91 | 3.92E-18 | ||
| CDD | 81 | 168 | 88 | 8.52483E-46 | – | |
| Gene3D | 81 | 170 | 90 | 3.1E-36 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
Expression pattern of LotjaGi2g1v0020200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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