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LotjaGi2g1v0414900.1

Overview

Field Value
Gene ID LotjaGi2g1v0414900
Transcript ID LotjaGi2g1v0414900.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|A0A0G2T569|A0A0G2T569_9ROSI DNA-directed RNA polymerase II non-catalytic subunit; Found in the gene: LotjaGi2g1v0414900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91266058..91270148) extracted from Lotus japonicus Gifu genome v1.2.

ATCAAATCTTAGGTTTGAACCCTCTCCCTAAATTTTTAGAAGCAAAAAAGGAGCATATGTTTATCATTTAAATATGATTA TATTCATGTACCAAAAATATGATTATATTACTCACATCTAGAACTCCCGCGGTTGGTTCGAAACGCAGCAAAGGTTGGAA AGTGACGGCGTTTTGAACTGAAAACATAGCAAAGTGAGAGAGAGAGGTACATTGATTAGGGTTTTTGGGTCTGCAATATT GTTCTTCGTACACGAGCTCTCTCAACCCAAGTAGTAAGTTTAATTTGAGAAATCTCGTCACTCTTTGAATCTTCGTGCTT CTGTTCAGTGTTTAATTCCATTCCAATTGATTCTAAACACATAGATACAACCAATCATTTTTTTTCATTCTAATCCTTAC TGGCTTCTGGAATGCACTATTTGTTAACCCTTATTTGCTTCTGCAATTTTTATGTAATTAACTGGATTTTTGTTATTGAT GATTTGGGTGATCTTGGTTTGTGGGAAACATTCATTCTAATCACCCATTATCTATGACTCCTCATCTTTGTTATGGCATT AGGGTTTAGTGCCTTTTTAGTTTACTGCTATATAGTTCTAGAGTGTTCATTTACTGATTGTTAGAGTACAGTACAATTTG TTATGCTGCATTGTATTTGTATTGTATATTGTTTCTACTGCATTGCTATTTCTCTGTTAGTCTTCTTAGCCTTTCGGTTC GGTTATGCCGTTCTGGCAGTTAGAATTCTGTTGTAGTGGTTGTTAGTTGTTACTAACTGAGTCAGTTAGTAACTGCCCAC CGAAGCTTAGCTCCTAGCCAAGCAGCTTGCCCTATCTCAAACTAGTTACTCAATTAATTCAGTTTTCATTCGGATGAATC TATTAGTTCTATCTATACTTACTTTTTCACAGTAATAAATAAATATCAAACTCCATTTTTGTGATGCAAAGTGTTTTCCA TTTCTACTTCTTGTTTATGTTTTTTTCTTTTTTTGGTTTTTCATTCATGGTTTCATATTCCTATCTCTGATAATTCTGTT TTAGTATATTAAAAACTTGCATGATTGCACCATTTATCTTTTCTAGTAATGTATGTGTTTGTGTTTTTATTTGAAACTAC TCTTATTTTTTGTTTTCGGGCCAGGAATAATTGTTCAGGTTTGGGCATAAAGGAGGCTCAAAAAATGTTTTTCCACATAG TGCTGGAACGAAATATGCAGCTGCACCCACGTTACTTTGGTCGTAATCTTCGTGATAATCTTGTTGCCAAGTTAATGAAA GATGTTGAAGGCACATGCAGGTGATTGATTATCTCAGTATTTTTCTTCTTACTAGAAAATGGGTGGTGAAAAATGGAAAA GAACAGGTTTTATATGTATTCCATAATCAGGGAACATTAGATTGAAGGTTTTCATTCATTAAGATAGAAACATTTGCAAT TAAAATAAGGGGCCACCAAAATAATAATGAAACCCCAAGGCCCCAAGCTAACAGGGACTTTAATCCCTCTATGAGTCGAG AACAGAGAGAGCCTCCTATCTTGGCCCACCGACAGGGATTTTATTTTATGCAGTTTTGCTTTTGATTTGTGTTCCTTTGA ACTACTTTTAACAGGTATCTCTAGTTTCCACATATATAAAGGGGTTTTTTTGGGGGTTGGGGGATAATGAAACAATTATC AACATGCCCTCCCCAGTTAAATATGTTTATAATGGTAACTCCATCCATGCATTTAATTGGAATGATATATAATTTTATTC AGCGTATAGTATTTATTTCTTGGACATTGGACATATGTAACATATGGATTTTCAACCATCATGTAGCGGTCGACATGGAT TTGTGGTGGCAGTTACAGGGATAGAAGACATTGGAAAAGGGTTAATTCTTGATGGTACTGGGTCTGTGACATTTCCGGTT AAATACCGATGTGTTGTCTTCAGACCATTTAAGGGAGAAGTTTTAGAAGCTGTTGTTACCATGGTGAACAAGGTTTGTAC AAGTCCTCTTTCTTTGGTGTAATTTAGCTATCTAACAATAATGTGTGGATATAGTGGTTTATAATTGTTTGAGTTCTGTC TGTACAGATGGGATTTTTTGCTGAAGCTGGACCTGTTCAAATCTTCGTTTCAAACCATGTAAGGTTTTTTTCTTTTATAA CCTTTGAGAAATGGTCTCTATAATCAATGTTATAAATTATTTCTAGAAGGTTGTTATCACTGTTCTTTGTTTTACCCACT AAAATTATGTTTCTTTATTATTATTGTCAAATGTGATAGAAACTGGGCCAGAACTCAGAATATACAGGAAGAAAATGTCT TTATTCACAAGTGAATCGTTGATATAGCCAAGTATTTTAGAGACCTGGCACTCTCCCACTCTAGACCCCTTTAATTTCCA AAACAAAAGATAAAACTCTCTTAACTTTCTCCCCCTTATTTATACTGTCTCATCTTTAACAAGTGAATCGTTGATATAGC CAAGTATTTGAGAGACCGCACTCTCCCACTCCAGACCCCTTTCCAAAACAAAAGATAAAACTCTCTAAACTTTCTCCCCC TTATTTATACTGTCTCATCTTTAACTAAAACCCTAGCCCCACCCCCCCTGCAATATGTGCTGTCTTCATTTGTTAGTATT TGCTAGTACAAACTAGATTAATTTATATAGTGTTGACTGATGCATGCATACCGTTTAATTTTAAATCACAATGTGTTCTT TATTTTTGCATAAATCGTTGACCTTTTAAAGTTTTAGATATGATGTATCCAATGAATTTCAGAATCGCTAAGTTTTATTT TCCATTTTCTTTTGTAGTTTATGTCATTACTATGCAACATGATATGTTTCAAGTTCAGCTTGTACCTTTAAATATTCTTT TGTCGGTTAAGACCTTTTTTTCCCTCTCAGTTGATTCCAGATGATATGGAGTTCCAGTCTGGAGATATGCCAAATTACAC TACTTCAGATGCATCAGTACGAATCATTTATAACTTTTTGTTTGAAAGAAGAGAGCAAGATTTTTTGTTTCGTTTTGTGG ATTCATTATCATGTTTTTTTCCTTTGTATTGTTGGTATTAAATATTAATCAATTGGTCTTTTGCAGGTTAAGATTCAGAA AGATAGTGAAGTGAGACTTAAGATAATTGGGACTCGAGTAGACGCTACTGAAATTGTATGCCCATATACTTTACACCTTT TACTTAGTTTTTATGAATATATATTACATCTTTTACTTTGTCTTCATGAATGCTGTTAAAGCCCCATCAGCTTTATGCTA AATACTGCTTTGAAACGTTCAAATTAATAGGATATGAAAGCTGTTAATAGCAACAGTATAGCTTGTTTCTCTGCAGATCT CTTTGCATAAGTTCCTCATCAAAGATCCTTTTAGTTTATGCTAGTTCCTCCAAATTTCTCAAGTTACTGTTTGCACCGAG AAAATTTTGATAAAATAAGAAACACCTTTTTCGTTCCTGCCATGATTATCTTCTATGCTGTGTGAAGATGTCTTCAATAA CTCGTGATACCAATGGCCTTGTAGTCTAGTGGAAATTTTAGCAAGCATATGACACTGGTTTTTGTACCAATTCGTGATGA GTTTTGATGCTAATGCACATGCTTTATTTATAGACTTATAGTACTAATGCACAAGTACTGGACTATTAAATTGCTTTGCC TTTGTTCTTTGGATGTGGTATATTTATTGATTTTAGGCTCCAGTGTCTTCTAGAGCTCATTTTTCTAATATTGTTCATTA CCCCTGTTTTTCTTTTGCAGTTCTGCATCGGTACCATTAAAGATGATTTCTTGGGTGTGATCAACGACCCTGTAACAATT TAAATGCAACTCAATGTACCCTACAGGACATGAATTGTTGCACCTGAAATCTTTTAGATATTATGTTGGTCTAACTCTAG CTGAAATTATCAATTCGTCAAGATTTACTTGGTTGATGTATCATTTGTGTTTAGTGTCCTCTTTCCCGAAAATATATGAA TACTACTAGTTATAACTTTATACGATTGTTTGTGGGACAGGAAATAATGAGACATAAATTTGGGGCAAAACCATCATAAT CCATTTCACAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0414900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTTTCCACATAGTGCTGGAACGAAATATGCAGCTGCACCCACGTTACTTTGGTCGTAATCTTCGTGATAATCTTGT TGCCAAGTTAATGAAAGATGTTGAAGGCACATGCAGCGGTCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAGACA TTGGAAAAGGGTTAATTCTTGATGGTACTGGGTCTGTGACATTTCCGGTTAAATACCGATGTGTTGTCTTCAGACCATTT AAGGGAGAAGTTTTAGAAGCTGTTGTTACCATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTTCAAATCTT CGTTTCAAACCATTTGATTCCAGATGATATGGAGTTCCAGTCTGGAGATATGCCAAATTACACTACTTCAGATGCATCAG TTAAGATTCAGAAAGATAGTGAAGTGAGACTTAAGATAATTGGGACTCGAGTAGACGCTACTGAAATTTTCTGCATCGGT ACCATTAAAGATGATTTCTTGGGTGTGATCAACGACCCTGTAACAATTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0414900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLILDGTGSVTFPVKYRCVVFRPF KGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDASVKIQKDSEVRLKIIGTRVDATEIFCIG TIKDDFLGVINDPVTI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12709
1 169 169 4.1E-90 –
SUPERFAMILY
SSF88798
1 78 78 3.01E-23
IPR036898
Gene3D
G3DSA:3.30.1490.120
1 80 80 2.0E-33
IPR036898
PANTHER
PTHR12709:SF4
1 169 169 4.1E-90 –
CDD
cd04329
2 81 80 6.10041E-41 –
Pfam
PF03876
9 77 69 8.4E-19
IPR005576
Pfam
PF00575
78 156 79 1.3E-16
IPR003029
SUPERFAMILY
SSF50249
79 169 91 2.94E-18
IPR012340
CDD
cd04462
81 168 88 3.01884E-46 –
Gene3D
G3DSA:2.40.50.140
81 170 90 1.0E-36 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0414900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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