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Lj1g3v2251580.1

Overview

Field Value
Gene ID Lj1g3v2251580
Transcript ID Lj1g3v2251580.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer arietinum] gi|502131232|ref|XP_004500918.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11079
1 194 194 8.10E-82 –
PANTHER
PTHR11079:SF73
1 194 194 8.10E-82 –
ProSiteProfiles
PS50889
82 155 74 12.97
IPR002942
SMART
SM00363
82 147 66 1.50E-09
IPR002942
SUPERFAMILY
SSF55174
82 169 88 6.39E-13 –
Gene3D
G3DSA:3.10.290.10
83 131 49 2.90E-14
IPR002942
CDD
cd00165
83 161 79 1.80E-14 –
Pfam
PF01479
83 129 47 4.10E-10
IPR002942
SUPERFAMILY
SSF55120
142 186 45 3.60E-32
IPR020103
Pfam
PF00849
156 286 131 5.20E-18
IPR006145
CDD
cd02869
157 293 137 2.40E-33 –
SUPERFAMILY
SSF55120
219 293 75 3.60E-32
IPR020103
PANTHER
PTHR11079
227 294 68 8.10E-82 –
PANTHER
PTHR11079:SF73
227 294 68 8.10E-82 –
ProSitePatterns
PS01129
231 245 15 –
IPR006224

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj1g3v2251580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2251580.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.