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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006935
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.541s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0041629.1
n.a. PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| chr0 13681900 13712650 +
2 domain predictions
3 GO terms
Lj0g3v0041629.2
n.a. PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| chr0 13681900 13712650 +
2 domain predictions
3 GO terms
Lj1g3v1788430.1
n.a. PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| chr1 21495977 21527096 +
2 domain predictions
3 GO terms
Lj1g3v5061000.1
n.a. PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max] gi|356571277|ref|XP_003553805.1| chr1 61957804 61970716 -
2 domain predictions
3 GO terms
Lj2g3v1987530.1
n.a. PREDICTED: regulator of nonsense transcripts 1 homolog isoform X2 [Cicer arietinum] gi|502160480|ref|XP_004511759.1| chr2 29436178 29443114 +
2 domain predictions
3 GO terms
Lj4g3v2973670.1
n.a. PREDICTED: DNA repair helicase XPB1-like [Cicer arietinum] gi|502139224|ref|XP_004503689.1| chr4 39342912 39348316 +
2 domain predictions
3 GO terms
Lj4g3v2978970.1
n.a. PREDICTED: DNA repair helicase XPB1-like [Glycine max] gi|356513365|ref|XP_003525384.1| chr4 39439476 39446042 +
2 domain predictions
3 GO terms
LotjaGi1g1v0372300.1
n.a. Dicer-like protein 3; TAIR: AT3G43920.2 dicer-like 3; Swiss-Prot: sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a; TrEMBL-Plants: tr|K7KIB7|K7KIB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372300 LjG1.1_chr1 85036555 85063016 +
2 domain predictions
3 GO terms
LotjaGi1g1v0798000.1
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136814701 136827226 -
2 domain predictions
3 GO terms
LotjaGi1g1v0798000.4
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136815175 136826448 -
2 domain predictions
3 GO terms
LotjaGi1g1v0798000.5
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136815175 136826484 -
2 domain predictions
3 GO terms
LotjaGi2g1v0417100.1
n.a. Regulator of nonsense transcripts 1-like protein; TAIR: AT5G47010.1 RNA helicase; Swiss-Prot: sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog; TrEMBL-Plants: tr|I1J9N5|I1J9N5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0417100 LjG1.1_chr2 91490178 91501926 +
2 domain predictions
3 GO terms
LotjaGi4g1v0283700.1
n.a. Dicer-like 3; TAIR: AT5G20320.1 dicer-like 4; Swiss-Prot: sp|P84634|DCL4_ARATH Dicer-like protein 4; TrEMBL-Plants: tr|K7MKZ2|K7MKZ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0283700 LjG1.1_chr4 65582409 65609480 +
2 domain predictions
3 GO terms
LotjaGi4g1v0428600.1
n.a. DNA repair helicase; TAIR: AT5G41370.1 DNA repair helicase XPB1-like protein; Swiss-Prot: sp|Q38861|XPB1_ARATH DNA repair helicase XPB1; TrEMBL-Plants: tr|V7CS33|V7CS33_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0428600 LjG1.1_chr4 80293960 80302166 +
2 domain predictions
3 GO terms
LotjaGi4g1v0428600.2
n.a. DNA repair helicase; TAIR: AT5G41370.1 DNA repair helicase XPB1-like protein; Swiss-Prot: sp|Q38861|XPB1_ARATH DNA repair helicase XPB1; TrEMBL-Plants: tr|V7CS33|V7CS33_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0428600 LjG1.1_chr4 80294226 80300188 +
2 domain predictions
3 GO terms
LotjaGi5g1v0177600_LC.1
n.a. DNA repair protein-like protein; TAIR: AT2G16390.2 SNF2 domain-containing protein / helicase domain-containing protein; Swiss-Prot: sp|Q9SIW2|CHR35_ARATH Protein CHROMATIN REMODELING 35; TrEMBL-Plants: tr|I1LVC4|I1LVC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0177600_LC LjG1.1_chr5 45195535 45204487 -
2 domain predictions
3 GO terms