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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1788430 |
| Transcript ID | Lj1g3v1788430.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | – | – | |
| PANTHER | 4 | 1496 | 1493 | 0 | – | |
| PANTHER | 4 | 1496 | 1493 | 0 | – | |
| SMART | 32 | 230 | 199 | 3.90E-23 | ||
| Gene3D | 34 | 198 | 165 | 3.70E-39 | ||
| ProSiteProfiles | 43 | 217 | 175 | 20.343 | ||
| Pfam | 47 | 199 | 153 | 3.80E-17 | ||
| CDD | 50 | 199 | 150 | 6.46E-19 | – | |
| SUPERFAMILY | 83 | 233 | 151 | 1.13E-38 | ||
| Gene3D | 381 | 520 | 140 | 1.90E-24 | ||
| SUPERFAMILY | 383 | 517 | 135 | 1.13E-38 | ||
| CDD | 386 | 499 | 114 | 9.19E-16 | – | |
| ProSiteProfiles | 393 | 541 | 149 | 14.034 | ||
| Pfam | 396 | 500 | 105 | 1.50E-17 | ||
| SMART | 408 | 503 | 96 | 1.40E-15 | ||
| Pfam | 570 | 656 | 87 | 4.00E-24 | ||
| ProSiteProfiles | 570 | 660 | 91 | 26.535 | ||
| SMART | 865 | 1024 | 160 | 1.00E-06 | ||
| SUPERFAMILY | 886 | 958 | 73 | 4.24E-13 | ||
| Pfam | 886 | 1021 | 136 | 2.30E-13 | ||
| Gene3D | 887 | 1000 | 114 | 8.00E-11 | – | |
| ProSiteProfiles | 888 | 1000 | 113 | 19.426 | ||
| SUPERFAMILY | 988 | 1000 | 13 | 4.24E-13 | ||
| SUPERFAMILY | 1018 | 1131 | 114 | 6.10E-31 | ||
| ProSiteProfiles | 1025 | 1197 | 173 | 25.711 | ||
| Gene3D | 1043 | 1119 | 77 | 1.50E-33 | ||
| CDD | 1044 | 1208 | 165 | 1.11E-33 | ||
| SMART | 1044 | 1217 | 174 | 3.10E-28 | ||
| Pfam | 1062 | 1194 | 133 | 1.20E-23 | ||
| Gene3D | 1165 | 1211 | 47 | 1.50E-33 | ||
| SUPERFAMILY | 1177 | 1214 | 38 | 6.10E-31 | ||
| Gene3D | 1237 | 1402 | 166 | 3.40E-44 | ||
| SUPERFAMILY | 1237 | 1403 | 167 | 2.62E-36 | ||
| ProSiteProfiles | 1238 | 1383 | 146 | 34.636 | ||
| SMART | 1253 | 1406 | 154 | 8.40E-34 | ||
| CDD | 1254 | 1406 | 153 | 6.70E-35 | ||
| ProSitePatterns | 1274 | 1282 | 9 | – | ||
| Pfam | 1274 | 1382 | 109 | 1.90E-20 | ||
| ProSiteProfiles | 1454 | 1477 | 24 | 8.834 | ||
| CDD | 1567 | 1650 | 84 | 1.16E-04 | – | |
| Coils | 1668 | 1668 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Molecular function | Endoribonuclease activity, producing 5'-phosphomonoesters | Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters. |
Expression pattern of Lj1g3v1788430.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1788430.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.